© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1678 |
| Gene name | |
| Location | Contig_138:23276..24789 |
| Strand | - |
| Gene length (bp) | 1513 |
| Transcript length (bp) | 1374 |
| Coding sequence length (bp) | 1374 |
| Protein length (aa) | 458 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16491 | Peptidase_M48_N | CAAX prenyl protease N-terminal, five membrane helices | 2.5E-64 | 40 | 224 |
| PF01435 | Peptidase_M48 | Peptidase family M48 | 2.2E-44 | 227 | 431 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P47154|STE24_YEAST | CAAX prenyl protease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE24 PE=1 SV=1 | 7 | 432 | 4.0E-128 |
| sp|Q10071|STE24_SCHPO | Probable CAAX prenyl protease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H1.05 PE=3 SV=1 | 1 | 432 | 5.0E-117 |
| sp|Q8RX88|FACE1_ARATH | CAAX prenyl protease 1 homolog OS=Arabidopsis thaliana GN=FACE1 PE=1 SV=1 | 17 | 435 | 3.0E-114 |
| sp|Q6EPN8|FACE1_ORYSJ | CAAX prenyl protease 1 homolog OS=Oryza sativa subsp. japonica GN=FACE1 PE=2 SV=1 | 17 | 431 | 4.0E-106 |
| sp|Q80W54|FACE1_MOUSE | CAAX prenyl protease 1 homolog OS=Mus musculus GN=Zmpste24 PE=1 SV=2 | 16 | 430 | 6.0E-99 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P47154|STE24_YEAST | CAAX prenyl protease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE24 PE=1 SV=1 | 7 | 432 | 4.0E-128 |
| sp|Q10071|STE24_SCHPO | Probable CAAX prenyl protease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H1.05 PE=3 SV=1 | 1 | 432 | 5.0E-117 |
| sp|Q8RX88|FACE1_ARATH | CAAX prenyl protease 1 homolog OS=Arabidopsis thaliana GN=FACE1 PE=1 SV=1 | 17 | 435 | 3.0E-114 |
| sp|Q6EPN8|FACE1_ORYSJ | CAAX prenyl protease 1 homolog OS=Oryza sativa subsp. japonica GN=FACE1 PE=2 SV=1 | 17 | 431 | 4.0E-106 |
| sp|Q80W54|FACE1_MOUSE | CAAX prenyl protease 1 homolog OS=Mus musculus GN=Zmpste24 PE=1 SV=2 | 16 | 430 | 6.0E-99 |
| sp|O75844|FACE1_HUMAN | CAAX prenyl protease 1 homolog OS=Homo sapiens GN=ZMPSTE24 PE=1 SV=2 | 17 | 430 | 1.0E-96 |
| sp|Q54FH7|FACE1_DICDI | CAAX prenyl protease 1 homolog OS=Dictyostelium discoideum GN=zmpste24 PE=3 SV=1 | 23 | 433 | 2.0E-83 |
| sp|Q9XVE5|FACE1_CAEEL | CAAX prenyl protease 1 homolog OS=Caenorhabditis elegans GN=fce-1 PE=1 SV=1 | 20 | 430 | 3.0E-72 |
| sp|P40769|YHFN_BACSU | Uncharacterized metalloprotease YhfN OS=Bacillus subtilis (strain 168) GN=yhfN PE=3 SV=2 | 109 | 428 | 2.0E-20 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004222 | metalloendopeptidase activity | Yes |
| GO:0006508 | proteolysis | Yes |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008237 | metallopeptidase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008233 | peptidase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0008152 | metabolic process | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0019538 | protein metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 119 | 136 | 17 |
| 2 | 171 | 188 | 17 |
| 3 | 195 | 217 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1678 MDFLQRLARFLDRPLFPWKKLILGFSVGQYLFETFLTLRQYGVLQRTKPPAVLAKEISQETFDKSQAYGRAKARF EIASGLWSQIQNVAFIQLDVLPALWSWTGGLLLRWAPARFTGEISHSIVFVMTFIVIQQVLNLPTRLYSTFVLEE SFGFNKQTPQLFVTDMIKTNLLTAAIMPPILAAFLKIIQKTGNQFVFYLWVFAAGLQLFTTTAYPIFIQPLFNKL SPLDEGELKTKVEQLAAGHSFPLRELFVIDGSKRSAHSNAYFYGLPWKKHIVIYDTLIEKTETSEIIAILAHELG HWKLGHTTRLFGIAQAHLLYVFSLFSVFIHNRSLYSAFGFHAQHPIVIGFILFSDALSPMDTVIKLLLNILSRRF EFEADDFARRLGYPAELAASLIKLHAQNLSTMDADWMYASYHFSHPHLSERLKALDWKPRAAALTTELDKEGVAK ASGRDEL* |
| Coding | >Hirsu2|1678 ATGGATTTCCTCCAACGCCTCGCCCGCTTCCTCGACCGTCCGCTGTTCCCCTGGAAGAAGCTCATCCTCGGCTTC TCGGTCGGCCAGTATCTTTTCGAGACGTTCCTCACACTTCGCCAGTACGGCGTGCTGCAGCGGACGAAGCCGCCG GCCGTGCTGGCCAAGGAGATCTCGCAGGAGACGTTCGACAAGTCGCAGGCGTACGGGCGGGCCAAGGCGCGCTTC GAGATCGCCAGCGGCCTGTGGTCGCAGATCCAGAATGTCGCCTTCATCCAGCTCGACGTGCTGCCCGCGCTGTGG TCGTGGACGGGCGGCCTGCTGCTGCGGTGGGCGCCGGCGCGCTTCACGGGCGAGATCAGCCACTCCATCGTCTTC GTCATGACCTTCATCGTCATCCAGCAGGTGCTGAACCTGCCGACGCGCCTCTACAGCACCTTTGTGCTTGAGGAG AGCTTCGGCTTCAACAAGCAGACGCCCCAGCTCTTCGTGACCGACATGATCAAGACGAACCTGCTGACGGCCGCC ATCATGCCGCCCATCCTGGCCGCCTTCCTCAAGATCATCCAGAAGACGGGCAACCAGTTCGTCTTCTACCTCTGG GTCTTCGCCGCCGGCCTGCAGCTCTTCACCACGACCGCCTACCCCATCTTCATCCAGCCGCTCTTCAACAAGCTG TCGCCGCTGGACGAGGGCGAGCTCAAGACCAAGGTCGAGCAGCTGGCCGCCGGCCACAGCTTCCCGCTGCGGGAG CTGTTCGTCATCGACGGCAGCAAGCGCAGCGCCCACTCCAACGCATACTTCTACGGCCTGCCGTGGAAGAAGCAC ATCGTCATCTACGACACGCTGATCGAGAAGACGGAGACGTCGGAGATCATCGCCATCCTGGCCCACGAGCTCGGC CACTGGAAGCTCGGCCACACCACCCGCCTCTTCGGCATCGCGCAGGCCCACCTGCTCTACGTCTTCAGCCTCTTC TCCGTCTTCATCCACAACCGCTCGCTCTACTCGGCCTTTGGCTTCCACGCCCAGCACCCCATCGTCATCGGCTTC ATCCTCTTCTCCGACGCGCTCTCGCCCATGGACACCGTCATCAAGCTGCTCCTCAACATCCTGTCGCGCCGCTTC GAGTTCGAGGCCGACGACTTCGCCCGCCGCCTCGGTTACCCCGCCGAGCTGGCCGCCTCGCTCATCAAGCTGCAC GCGCAGAACCTCAGCACCATGGACGCCGACTGGATGTACGCCAGCTACCACTTCTCCCACCCGCACCTGTCGGAG CGCCTCAAGGCCCTCGACTGGAAGCCCCGCGCCGCCGCCCTCACCACCGAGCTCGACAAGGAGGGCGTCGCCAAG GCCAGCGGCCGCGACGAGCTGTAG |
| Transcript | >Hirsu2|1678 ATGGATTTCCTCCAACGCCTCGCCCGCTTCCTCGACCGTCCGCTGTTCCCCTGGAAGAAGCTCATCCTCGGCTTC TCGGTCGGCCAGTATCTTTTCGAGACGTTCCTCACACTTCGCCAGTACGGCGTGCTGCAGCGGACGAAGCCGCCG GCCGTGCTGGCCAAGGAGATCTCGCAGGAGACGTTCGACAAGTCGCAGGCGTACGGGCGGGCCAAGGCGCGCTTC GAGATCGCCAGCGGCCTGTGGTCGCAGATCCAGAATGTCGCCTTCATCCAGCTCGACGTGCTGCCCGCGCTGTGG TCGTGGACGGGCGGCCTGCTGCTGCGGTGGGCGCCGGCGCGCTTCACGGGCGAGATCAGCCACTCCATCGTCTTC GTCATGACCTTCATCGTCATCCAGCAGGTGCTGAACCTGCCGACGCGCCTCTACAGCACCTTTGTGCTTGAGGAG AGCTTCGGCTTCAACAAGCAGACGCCCCAGCTCTTCGTGACCGACATGATCAAGACGAACCTGCTGACGGCCGCC ATCATGCCGCCCATCCTGGCCGCCTTCCTCAAGATCATCCAGAAGACGGGCAACCAGTTCGTCTTCTACCTCTGG GTCTTCGCCGCCGGCCTGCAGCTCTTCACCACGACCGCCTACCCCATCTTCATCCAGCCGCTCTTCAACAAGCTG TCGCCGCTGGACGAGGGCGAGCTCAAGACCAAGGTCGAGCAGCTGGCCGCCGGCCACAGCTTCCCGCTGCGGGAG CTGTTCGTCATCGACGGCAGCAAGCGCAGCGCCCACTCCAACGCATACTTCTACGGCCTGCCGTGGAAGAAGCAC ATCGTCATCTACGACACGCTGATCGAGAAGACGGAGACGTCGGAGATCATCGCCATCCTGGCCCACGAGCTCGGC CACTGGAAGCTCGGCCACACCACCCGCCTCTTCGGCATCGCGCAGGCCCACCTGCTCTACGTCTTCAGCCTCTTC TCCGTCTTCATCCACAACCGCTCGCTCTACTCGGCCTTTGGCTTCCACGCCCAGCACCCCATCGTCATCGGCTTC ATCCTCTTCTCCGACGCGCTCTCGCCCATGGACACCGTCATCAAGCTGCTCCTCAACATCCTGTCGCGCCGCTTC GAGTTCGAGGCCGACGACTTCGCCCGCCGCCTCGGTTACCCCGCCGAGCTGGCCGCCTCGCTCATCAAGCTGCAC GCGCAGAACCTCAGCACCATGGACGCCGACTGGATGTACGCCAGCTACCACTTCTCCCACCCGCACCTGTCGGAG CGCCTCAAGGCCCTCGACTGGAAGCCCCGCGCCGCCGCCCTCACCACCGAGCTCGACAAGGAGGGCGTCGCCAAG GCCAGCGGCCGCGACGAGCTGTAG |
| Gene | >Hirsu2|1678 ATGGATTTCCTCCAAGTACGTCTGGCAATCGCGTTGCCTTGGTCTCGATTGGCGGCCGCCCTCCCCCGTGTCCGG ACGACGGGGCCCAACGGGGGATGCGCCTGGACGACGACGGCTCGCCTCGTCTCCTTGTCCGTGTGCTGACGGTTC GCAGCGCCTCGCCCGCTTCCTCGACCGTCCGCTGTTCCCCTGGAAGAAGCTCATCCTCGGCTTCTCGGTCGGCCA GTATCTTTTCGAGACGTTCCTCACACTTCGCCAGTACGGCGTGCTGCAGCGGACGAAGCCGCCGGCCGTGCTGGC CAAGGAGATCTCGCAGGAGACGTTCGACAAGTCGCAGGCGTACGGGCGGGCCAAGGCGCGCTTCGAGATCGCCAG CGGCCTGTGGTCGCAGATCCAGAATGTCGCCTTCATCCAGCTCGACGTGCTGCCCGCGCTGTGGTCGTGGACGGG CGGCCTGCTGCTGCGGTGGGCGCCGGCGCGCTTCACGGGCGAGATCAGCCACTCCATCGTCTTCGTCATGACCTT CATCGTCATCCAGCAGGTGCTGAACCTGCCGACGCGCCTCTACAGCACCTTTGTGCTTGAGGAGAGCTTCGGCTT CAACAAGCAGACGCCCCAGCTCTTCGTGACCGACATGATCAAGACGAACCTGCTGACGGCCGCCATCATGCCGCC CATCCTGGCCGCCTTCCTCAAGATCATCCAGAAGACGGGCAACCAGTTCGTCTTCTACCTCTGGGTCTTCGCCGC CGGCCTGCAGCTCTTCACCACGACCGCCTACCCCATCTTCATCCAGCCGCTCTTCAACAAGCTGTCGCCGCTGGA CGAGGGCGAGCTCAAGACCAAGGTCGAGCAGCTGGCCGCCGGCCACAGCTTCCCGCTGCGGGAGCTGTTCGTCAT CGACGGCAGCAAGCGCAGCGCCCACTCCAACGCATACTTCTACGGCCTGCCGTGGAAGAAGCACATCGTCATCTA CGACACGCTGATCGAGAAGACGGAGACGTCGGAGATCATCGCCATCCTGGCCCACGAGCTCGGCCACTGGAAGCT CGGCCACACCACCCGCCTCTTCGGCATCGCGCAGGCCCACCTGCTCTACGTCTTCAGCCTCTTCTCCGTCTTCAT CCACAACCGCTCGCTCTACTCGGCCTTTGGCTTCCACGCCCAGCACCCCATCGTCATCGGCTTCATCCTCTTCTC CGACGCGCTCTCGCCCATGGACACCGTCATCAAGCTGCTCCTCAACATCCTGTCGCGCCGCTTCGAGTTCGAGGC CGACGACTTCGCCCGCCGCCTCGGTTACCCCGCCGAGCTGGCCGCCTCGCTCATCAAGCTGCACGCGCAGAACCT CAGCACCATGGACGCCGACTGGATGTACGCCAGCTACCACTTCTCCCACCCGCACCTGTCGGAGCGCCTCAAGGC CCTCGACTGGAAGCCCCGCGCCGCCGCCCTCACCACCGAGCTCGACAAGGAGGGCGTCGCCAAGGCCAGCGGCCG CGACGAGCTGTAG |