Protein ID | Hirsu2|1667 |
Gene name | |
Location | Contig_1377:4184..6418 |
Strand | + |
Gene length (bp) | 2234 |
Transcript length (bp) | 2091 |
Coding sequence length (bp) | 2091 |
Protein length (aa) | 697 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q61282|PGCA_MOUSE | Aggrecan core protein OS=Mus musculus GN=Acan PE=1 SV=2 | 235 | 677 | 9.0E-09 |
sp|P23253|TCNA_TRYCR | Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1 | 318 | 689 | 3.0E-07 |
sp|P07897|PGCA_RAT | Aggrecan core protein OS=Rattus norvegicus GN=Acan PE=1 SV=2 | 280 | 542 | 2.0E-06 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1914 | 0.2051 | 0.9254 | 0.2099 | 0.0841 | 0.0213 | 0.0976 | 0.0845 | 0.0745 | 0.0008 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 29 | 0.998318 |
Orthofinder run ID | 4 |
Orthogroup | 1760 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1667 MASHGARGRGAKAKVTALAALMASMAARANEDDPVTVAVTVTTYLDFNAGCLNACPQALPTLEANPHQRPEVPFV TLTSTGDFAAPTVSTVHPTCDGCQGTVIICKPTDAAAAMAAAPPGAAAIPTLTLPHARPADPTVTLTPAGGGKPP IAVIGNPAGLANPTVTLPFAGPDDALVTLAPRARGSRPLVIKGDLDGVKKLPKGPLVGADTNGDGIPDVVPGPGG VVDANGDGKPDFTVLPGGGIDRNGDGKPDGPLPPNAAVDRNGDGKSDYPLVLGPGAVDTNGDGIPDVNAGGFLDL GGANGGGPKGPGPGGMGPGSPADNNGDGKPNAGAKKPGYPADTNGDGKPDTTVMPDGGIGPGSPVDTNGDGKPDT TVMPDGGIDKNGDGKPDARLLPGGGVDTTGDGKPDTPVLPGGYVDTDGSGKPDIQIFPKPKEDNGAGKPGPDAPF VIPVDTNGDGKPDTTVMPGGGIDTDGDGKPDVTLLPGGGVDTNGDGKPDTPVLPGGYIDTDGDGKPDVQLYPTPK DDKGAGKPGPDMPAVVPVIPVDTNGDGKPDTTVMPGGGIDKNGDGKPDVTLLPGGVVDTNGDGKPDTTVMPGGYI DTDGDGKPDLQLYPTPRPENSGGGGEPAPNMPSAVPDVPVIPVDNNGDGRPDTTVMPGGGIDKDGDGKPDVTLLP GGGVDTNGDGKPDTTLPGSQL* |
Coding | >Hirsu2|1667 ATGGCCTCCCACGGCGCCCGCGGCCGAGGCGCCAAAGCCAAGGTCACGGCCCTGGCCGCACTCATGGCTTCCATG GCGGCCCGGGCCAACGAGGACGACCCCGTCACCGTCGCCGTCACCGTCACGACCTACCTGGACTTCAACGCCGGC TGCCTCAACGCCTGCCCGCAGGCGCTCCCGACGCTCGAGGCCAACCCGCACCAGCGACCCGAGGTCCCCTTCGTC ACGCTGACCTCGACCGGCGACTTCGCCGCGCCGACCGTCTCGACCGTCCACCCCACCTGTGACGGCTGTCAAGGG ACCGTCATCATCTGCAAGCCGACCGACGCCGCCGCCGCCATGGCCGCCGCTCCCCCGGGCGCCGCCGCGATCCCC ACCCTGACGCTGCCCCACGCCCGCCCCGCCGACCCGACCGTCACCTTGACGCCGGCCGGCGGGGGCAAGCCGCCC ATCGCCGTCATCGGCAACCCGGCCGGCCTGGCCAACCCGACCGTCACCCTGCCGTTCGCGGGGCCCGACGACGCG CTCGTCACGCTGGCCCCCCGCGCCCGGGGCTCGCGGCCGCTCGTCATCAAGGGCGACCTGGACGGCGTGAAGAAG CTGCCCAAGGGACCCCTCGTCGGCGCCGACACCAACGGTGACGGCATCCCCGACGTCGTCCCCGGCCCGGGCGGC GTCGTCGACGCCAACGGAGACGGCAAGCCCGACTTCACCGTCCTCCCGGGCGGCGGAATCGACCGCAACGGCGAC GGCAAGCCTGATGGGCCCTTGCCCCCCAACGCCGCCGTCGACCGCAACGGCGATGGAAAGTCCGACTACCCGCTC GTCCTCGGCCCCGGCGCCGTCGACACCAACGGCGACGGCATTCCCGACGTGAATGCGGGCGGCTTCCTGGACTTG GGCGGCGCCAACGGGGGCGGGCCGAAGGGACCAGGCCCCGGCGGCATGGGCCCCGGCTCTCCCGCCGACAACAAC GGGGATGGAAAGCCCAACGCCGGCGCCAAGAAACCCGGCTATCCCGCCGACACCAACGGCGACGGCAAGCCGGAT ACGACGGTCATGCCTGACGGTGGCATCGGGCCCGGCTCTCCCGTTGACACCAACGGTGACGGCAAGCCGGATACA ACGGTCATGCCCGACGGCGGCATCGACAAGAACGGCGACGGCAAGCCCGACGCGCGGCTGCTCCCGGGCGGCGGC GTCGACACCACCGGCGACGGCAAGCCCGATACCCCGGTCCTCCCGGGCGGCTATGTCGATACCGATGGCAGCGGC AAGCCGGACATTCAGATCTTCCCCAAGCCTAAGGAAGACAACGGCGCAGGAAAGCCCGGTCCCGACGCGCCGTTC GTAATTCCGGTGGACACCAACGGTGACGGTAAGCCAGACACGACGGTCATGCCCGGCGGCGGCATCGACACGGAC GGAGACGGGAAGCCCGATGTTACCCTCCTGCCCGGCGGCGGCGTCGACACCAACGGCGACGGTAAGCCCGATACC CCGGTCCTGCCCGGTGGCTATATCGATACCGACGGCGATGGGAAGCCGGACGTGCAGCTCTACCCCACGCCTAAG GACGACAAGGGCGCAGGGAAGCCAGGTCCCGATATGCCGGCTGTGGTTCCCGTGATTCCCGTGGACACCAACGGC GACGGCAAGCCGGACACGACGGTCATGCCCGGCGGCGGCATCGACAAGAACGGAGACGGCAAGCCCGATGTTACC CTCCTGCCCGGCGGCGTCGTCGACACCAACGGCGACGGTAAGCCGGACACGACGGTCATGCCCGGCGGCTACATC GACACCGACGGCGACGGGAAGCCGGATCTTCAGCTCTACCCTACGCCCCGCCCCGAAAACAGCGGCGGAGGAGGG GAGCCCGCTCCGAATATGCCGTCCGCCGTTCCCGATGTGCCTGTGATTCCCGTGGATAACAACGGCGACGGTAGG CCAGATACCACGGTCATGCCCGGCGGCGGCATCGACAAGGACGGAGACGGCAAGCCCGATGTCACCCTCCTGCCC GGCGGCGGCGTCGATACCAACGGCGACGGCAAGCCGGACACGACCTTACCCGGCTCCCAGCTCTAG |
Transcript | >Hirsu2|1667 ATGGCCTCCCACGGCGCCCGCGGCCGAGGCGCCAAAGCCAAGGTCACGGCCCTGGCCGCACTCATGGCTTCCATG GCGGCCCGGGCCAACGAGGACGACCCCGTCACCGTCGCCGTCACCGTCACGACCTACCTGGACTTCAACGCCGGC TGCCTCAACGCCTGCCCGCAGGCGCTCCCGACGCTCGAGGCCAACCCGCACCAGCGACCCGAGGTCCCCTTCGTC ACGCTGACCTCGACCGGCGACTTCGCCGCGCCGACCGTCTCGACCGTCCACCCCACCTGTGACGGCTGTCAAGGG ACCGTCATCATCTGCAAGCCGACCGACGCCGCCGCCGCCATGGCCGCCGCTCCCCCGGGCGCCGCCGCGATCCCC ACCCTGACGCTGCCCCACGCCCGCCCCGCCGACCCGACCGTCACCTTGACGCCGGCCGGCGGGGGCAAGCCGCCC ATCGCCGTCATCGGCAACCCGGCCGGCCTGGCCAACCCGACCGTCACCCTGCCGTTCGCGGGGCCCGACGACGCG CTCGTCACGCTGGCCCCCCGCGCCCGGGGCTCGCGGCCGCTCGTCATCAAGGGCGACCTGGACGGCGTGAAGAAG CTGCCCAAGGGACCCCTCGTCGGCGCCGACACCAACGGTGACGGCATCCCCGACGTCGTCCCCGGCCCGGGCGGC GTCGTCGACGCCAACGGAGACGGCAAGCCCGACTTCACCGTCCTCCCGGGCGGCGGAATCGACCGCAACGGCGAC GGCAAGCCTGATGGGCCCTTGCCCCCCAACGCCGCCGTCGACCGCAACGGCGATGGAAAGTCCGACTACCCGCTC GTCCTCGGCCCCGGCGCCGTCGACACCAACGGCGACGGCATTCCCGACGTGAATGCGGGCGGCTTCCTGGACTTG GGCGGCGCCAACGGGGGCGGGCCGAAGGGACCAGGCCCCGGCGGCATGGGCCCCGGCTCTCCCGCCGACAACAAC GGGGATGGAAAGCCCAACGCCGGCGCCAAGAAACCCGGCTATCCCGCCGACACCAACGGCGACGGCAAGCCGGAT ACGACGGTCATGCCTGACGGTGGCATCGGGCCCGGCTCTCCCGTTGACACCAACGGTGACGGCAAGCCGGATACA ACGGTCATGCCCGACGGCGGCATCGACAAGAACGGCGACGGCAAGCCCGACGCGCGGCTGCTCCCGGGCGGCGGC GTCGACACCACCGGCGACGGCAAGCCCGATACCCCGGTCCTCCCGGGCGGCTATGTCGATACCGATGGCAGCGGC AAGCCGGACATTCAGATCTTCCCCAAGCCTAAGGAAGACAACGGCGCAGGAAAGCCCGGTCCCGACGCGCCGTTC GTAATTCCGGTGGACACCAACGGTGACGGTAAGCCAGACACGACGGTCATGCCCGGCGGCGGCATCGACACGGAC GGAGACGGGAAGCCCGATGTTACCCTCCTGCCCGGCGGCGGCGTCGACACCAACGGCGACGGTAAGCCCGATACC CCGGTCCTGCCCGGTGGCTATATCGATACCGACGGCGATGGGAAGCCGGACGTGCAGCTCTACCCCACGCCTAAG GACGACAAGGGCGCAGGGAAGCCAGGTCCCGATATGCCGGCTGTGGTTCCCGTGATTCCCGTGGACACCAACGGC GACGGCAAGCCGGACACGACGGTCATGCCCGGCGGCGGCATCGACAAGAACGGAGACGGCAAGCCCGATGTTACC CTCCTGCCCGGCGGCGTCGTCGACACCAACGGCGACGGTAAGCCGGACACGACGGTCATGCCCGGCGGCTACATC GACACCGACGGCGACGGGAAGCCGGATCTTCAGCTCTACCCTACGCCCCGCCCCGAAAACAGCGGCGGAGGAGGG GAGCCCGCTCCGAATATGCCGTCCGCCGTTCCCGATGTGCCTGTGATTCCCGTGGATAACAACGGCGACGGTAGG CCAGATACCACGGTCATGCCCGGCGGCGGCATCGACAAGGACGGAGACGGCAAGCCCGATGTCACCCTCCTGCCC GGCGGCGGCGTCGATACCAACGGCGACGGCAAGCCGGACACGACCTTACCCGGCTCCCAGCTCTAG |
Gene | >Hirsu2|1667 ATGGCCTCCCACGGCGCCCGCGGCCGAGGCGCCAAAGCCAAGGTCACGGCCCTGGCCGCACTCATGGCTTCCATG GCGGCCCGGGCCAACGAGGACGACCCCGTCACCGTCGCCGTCACCGTCACGACCTACCTGGACTTCAACGCCGGC TGCCTCAACGCCTGCCCGCAGGCGCTCCCGACGCTCGAGGCCAACCCGCACCAGCGACCCGAGGTCCCCTTCGTC ACGCTGACCTCGACCGGCGACTTCGCCGCGCCGACCGTCTCGACCGTCCACCCCACCTGTGACGGCTGTCAAGGG ACCGTCATCATCTGCAAGCCGACCGACGCCGCCGCCGCCATGGCCGCCGCTCCCCCGGGCGCCGCCGCGATCCCC ACCCTGACGCTGCCCCACGCCCGCCCCGCCGACCCGACCGTCACCTTGACGCCGGCCGGCGGGGGCAAGCCGCCC ATCGCCGTCATCGGCAACCCGGCCGGCCTGGCCAACCCGACCGTCACCCTGCCGTTCGCGGGGCCCGACGACGCG CTCGTCACGCTGGCCCCCCGCGCCCGGGGCTCGCGGCCGCTCGTCATCAAGGGCGACCTGGACGGCGTGAAGAAG CTGCCCAAGGGACCCCTCGTCGGCGCCGACACCAACGGTGACGGCATCCCCGACGTCGTCCCCGGCCCGGGCGGC GTCGTCGACGCCAACGGAGACGGCAAGCCCGACTTCACCGTCCTCCCGGGCGGCGGAATCGACCGCAACGGCGAC GGCAAGCCTGATGGGCCCTTGCCCCCCAACGCCGCCGTCGACCGCAACGGCGATGGAAAGTCCGACTACCCGCTC GTCCTCGGCCCCGGCGCCGTCGACACCAACGGCGACGGCATTCCCGACGTGAATGCGGGCGGCTTCCTGGACTTG GGCGGCGCCAACGGGGGCGGGCCGAAGGGACCAGGCCCCGGCGGCATGGGCCCCGGCTCTCCCGCCGACAACAAC GGGGATGGAAAGCCCAACGCCGGCGCCAAGAAACCCGGCTATCCCGCCGACACCAACGGCGACGGCAAGCCGGAT ACGACGGTCATGCCTGACGGTGGCATCGGGCCCGGCTCTCCCGTTGACACCAACGGTGACGGCAAGCCGGATACA ACGGTCATGCCCGACGGCGGCATCGACAAGAACGGCGACGGCAAGCCCGACGCGCGGCTGCTCCCGGGCGGCGGC GTCGACACCACCGGCGACGGCAAGCCCGATACCCCGGTCCTCCCGGGCGGCTATGTCGATACCGATGGCAGCGGC AAGCCGGACATTCAGATCTTCCCCAAGCCTAAGGAAGACAACGGCGCAGGAAAGCCCGGTCCCGACGCGCCGTTC GTAATTCCGGTGGACACCAACGGTGACGGTAAGCCAGACACGACGGTCATGCCCGGCGGCGGCATCGACACGGAC GGAGACGGGAAGCCCGATGTTACCCTCCTGCCCGGCGGCGGCGTCGACACCAACGGCGACGGTAAGCCCGATACC CCGGTCCTGCCCGGTGGCTATATCGATACCGACGGCGATGGGAAGCCGGACGTGCAGCTCTACCCCACGCCTAAG GACGACAAGGGCGCAGGGAAGCCAGGTCCCGATATGCCGGCTGTGGTTCCCGTGATTCCCGTGGACACCAACGGC GACGGCAAGCCGGACACGACGGTCATGCCCGGCGGCGGCATCGACAAGAACGGAGACGGCAAGCCCGATGTTACC CTCCTGCCCGGCGGCGTCGTCGACACCAACGGCGACGGTAAGCCGGACACGACGGTCATGCCCGGCGGCTACATC GACACCGACGGCGACGGGAAGCCGGATCTTCAGCTCTACCCTACGCCCCGCCCCGAAAACAGCGGCGGAGGAGGG GAGCCCGCTCCGAATATGCCGTCCGCCGTTCCCGATGTGCCTGTGATTCCCGTGGATAACAACGGCGACGGTAGG CCAGATACCACGGTCATGCCCGGCGGCGGCATCGACAAGGACGGAGACGGCAAGCCCGATGTCACCCTCCTGCCC GGCGGCGGCGTCGATACCAACGGCGACGGCAAGCCGGACACGACCGTCGGGCCCGGCGGCTACATCGACACCGAC GGCGACGGCAAGCCGGATCTTCAGCTCTATCCCACGCCCCGCCCCGGGAAGACTTCCACTCCGAATGCTGGCAAC CCGCCTCCCAGCTCGAGTTACTCGCCTCCCCGCTCCAGTTACCCGGCTCCCAGCTCTAG |