Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1656
Gene name
LocationContig_1373:6352..6712
Strand-
Gene length (bp)360
Transcript length (bp)360
Coding sequence length (bp)360
Protein length (aa) 120

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q03277|PO11_BRACO Retrovirus-related Pol polyprotein from type-1 retrotransposable element R1 (Fragment) OS=Bradysia coprophila PE=3 SV=1 1 73 6.0E-09
sp|P21329|RTJK_DROFU RNA-directed DNA polymerase from mobile element jockey OS=Drosophila funebris GN=jockeypol PE=1 SV=1 16 73 3.0E-07

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.3054 0.2503 0.6059 0.1435 0.3553 0.0135 0.1175 0.0969 0.486 0.1062

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup369
Change Orthofinder run
Species Protein ID
Ophiocordyceps kimflemingae Ophio5|941
Ophiocordyceps subramaniannii Hirsu2|10220
Ophiocordyceps subramaniannii Hirsu2|1656 (this protein)
Ophiocordyceps subramaniannii Hirsu2|552
Ophiocordyceps subramaniannii Hirsu2|7707
Ophiocordyceps subramaniannii Hirsu2|7736
Ophiocordyceps subramaniannii Hirsu2|8187
Ophiocordyceps subramaniannii Hirsu2|84
Ophiocordyceps subramaniannii Hirsu2|8425
Ophiocordyceps subramaniannii Hirsu2|8428

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1656
MLRRVWNHIGEAVRELYESCLHQGYHPTCFRVAEVVMIPKPGKRDLSTPRGWRPISLLACLGKGLERLIVRRLAW
AAISQIVIHSQHAGALPKRSALDLALALIHDAETALALGGDQAG*
Coding >Hirsu2|1656
ATGCTGCGGCGAGTCTGGAACCACATCGGCGAGGCGGTGAGGGAGTTGTATGAGAGTTGCCTACACCAGGGCTAC
CACCCGACCTGCTTCCGCGTGGCGGAGGTGGTGATGATCCCCAAGCCGGGCAAGAGAGACTTGTCTACCCCGAGA
GGCTGGAGGCCCATCTCGCTCCTAGCCTGCCTCGGAAAGGGACTCGAGCGTCTGATAGTGCGCCGGCTGGCCTGG
GCCGCCATCAGCCAAATAGTCATCCACAGCCAGCACGCAGGTGCGCTGCCCAAACGCTCGGCGCTCGACCTGGCG
CTGGCATTGATCCACGACGCCGAGACGGCCCTTGCGCTCGGGGGTGACCAAGCTGGCTAG
Transcript >Hirsu2|1656
ATGCTGCGGCGAGTCTGGAACCACATCGGCGAGGCGGTGAGGGAGTTGTATGAGAGTTGCCTACACCAGGGCTAC
CACCCGACCTGCTTCCGCGTGGCGGAGGTGGTGATGATCCCCAAGCCGGGCAAGAGAGACTTGTCTACCCCGAGA
GGCTGGAGGCCCATCTCGCTCCTAGCCTGCCTCGGAAAGGGACTCGAGCGTCTGATAGTGCGCCGGCTGGCCTGG
GCCGCCATCAGCCAAATAGTCATCCACAGCCAGCACGCAGGTGCGCTGCCCAAACGCTCGGCGCTCGACCTGGCG
CTGGCATTGATCCACGACGCCGAGACGGCCCTTGCGCTCGGGGGTGACCAAGCTGGCTAG
Gene >Hirsu2|1656
ATGCTGCGGCGAGTCTGGAACCACATCGGCGAGGCGGTGAGGGAGTTGTATGAGAGTTGCCTACACCAGGGCTAC
CACCCGACCTGCTTCCGCGTGGCGGAGGTGGTGATGATCCCCAAGCCGGGCAAGAGAGACTTGTCTACCCCGAGA
GGCTGGAGGCCCATCTCGCTCCTAGCCTGCCTCGGAAAGGGACTCGAGCGTCTGATAGTGCGCCGGCTGGCCTGG
GCCGCCATCAGCCAAATAGTCATCCACAGCCAGCACGCAGGTGCGCTGCCCAAACGCTCGGCGCTCGACCTGGCG
CTGGCATTGATCCACGACGCCGAGACGGCCCTTGCGCTCGGGGGTGACCAAGCTGGCTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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