© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1640 |
| Gene name | |
| Location | Contig_137:26560..28212 |
| Strand | - |
| Gene length (bp) | 1652 |
| Transcript length (bp) | 1491 |
| Coding sequence length (bp) | 1491 |
| Protein length (aa) | 497 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.8E-28 | 103 | 442 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 95 | 256 | 3.0E-06 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 97 | 314 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 41 | 63 | 22 |
| 2 | 104 | 126 | 22 |
| 3 | 135 | 154 | 19 |
| 4 | 169 | 191 | 22 |
| 5 | 204 | 226 | 22 |
| 6 | 230 | 252 | 22 |
| 7 | 291 | 313 | 22 |
| 8 | 328 | 350 | 22 |
| 9 | 362 | 384 | 22 |
| 10 | 394 | 416 | 22 |
| 11 | 428 | 450 | 22 |
| 12 | 460 | 482 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1640 MMTVGRDVPEDAPLLGRDELQDEPLPSSAARPKPWLAKTPGTMILLMTIVKFGVTTSGMLILIPMYRLIEDVLCH AHYHDSSPGLIDEMRCKGDEVQSRLAFMVGWFGLFNSILTLLVSFPYGLLADRIGRKPMALMAYGGTTAACYFAA LMLGRMQAQLRSNPYLLMTVSLFLLFGGGIPVLIATLYAMAADVSSEEEKATSFLYLSFGVTAGVLVGPLLGGLL MERYGPWAPIYVVLAISPAILGLIGLIPETLVVEAARQGPELGLGEHVAEGLRDLVRSVALVRDPNVLLVLVTFL FQNAKFVAYTSTLTQYLSKRFGWRLAETSLLLSPLGIVNLAVLLALSGVSRVLTSSPRLRLGTFGKDLLLAQAST VLILAGALLQGLSSDVGLFLLGLFVGALGFADAPLARAAVSHHVEPRLTSRLYALVSMTEALGSFLAGPALAWLF RQGLRWGGLWMGLPWLYIAFLSVVTLAVLLFVRPPRGSGRVCADMD* |
| Coding | >Hirsu2|1640 ATGATGACAGTTGGACGGGACGTGCCTGAAGATGCTCCGCTACTGGGACGGGATGAGCTACAGGACGAGCCGCTG CCCTCGTCGGCGGCGAGGCCGAAACCCTGGCTGGCCAAGACGCCTGGCACCATGATCCTCCTCATGACGATTGTC AAGTTCGGCGTCACGACGAGCGGTATGCTCATCCTCATCCCCATGTACCGGCTCATCGAAGACGTCCTCTGCCAC GCCCACTACCACGACAGCTCTCCCGGCCTCATCGATGAGATGAGGTGCAAGGGCGACGAGGTCCAGTCGCGGCTG GCCTTTATGGTCGGCTGGTTTGGCCTCTTCAACTCCATCCTGACTCTGCTCGTGTCTTTTCCATACGGGCTGCTC GCCGATCGCATCGGTCGCAAGCCAATGGCCCTGATGGCCTACGGCGGCACCACGGCCGCCTGCTACTTCGCCGCG CTCATGCTCGGCAGGATGCAGGCCCAGCTGCGCAGCAACCCGTACCTGCTGATGACCGTCTCCCTGTTCCTGCTC TTCGGCGGCGGCATCCCCGTCTTGATCGCCACGCTGTACGCCATGGCGGCCGACGTCAGCTCGGAAGAAGAAAAG GCCACGAGCTTTCTGTACCTGAGCTTTGGCGTCACCGCCGGCGTGCTCGTCGGCCCGCTGCTGGGCGGCCTTCTG ATGGAGAGGTACGGGCCGTGGGCGCCCATCTACGTCGTCCTGGCCATCTCGCCGGCCATCCTCGGCCTCATCGGG CTGATCCCGGAGACGCTGGTGGTCGAGGCCGCTCGACAAGGCCCCGAGCTCGGCCTCGGAGAGCACGTCGCCGAG GGGCTTCGCGACCTGGTCCGGTCCGTCGCCCTGGTCAGGGACCCCAACGTCCTGCTCGTCCTGGTCACGTTCCTC TTCCAGAACGCCAAGTTCGTGGCCTACACCTCGACCCTGACGCAGTACCTCAGCAAGCGGTTCGGCTGGCGGCTG GCGGAGACGAGCCTGCTGCTCTCGCCGCTCGGCATCGTCAACCTCGCCGTGCTGCTGGCCCTGTCCGGCGTGTCG CGGGTGCTGACGTCGTCGCCGCGCCTCCGCCTCGGCACCTTCGGCAAGGACCTGCTGCTGGCCCAGGCCTCGACC GTGCTCATCCTCGCCGGCGCCCTGCTGCAGGGCCTGAGCTCGGACGTCGGCCTGTTCCTGCTGGGCCTGTTCGTC GGCGCCCTGGGCTTCGCCGACGCGCCGCTCGCCCGCGCCGCCGTCTCGCACCACGTCGAGCCGCGACTCACCAGC CGGCTCTACGCCCTCGTCAGCATGACCGAGGCGCTCGGCTCTTTCCTCGCCGGGCCGGCTCTGGCCTGGCTCTTC CGCCAGGGCCTGCGCTGGGGGGGCCTCTGGATGGGCCTGCCTTGGCTGTACATTGCCTTTCTCTCCGTCGTCACG CTGGCCGTCTTGCTGTTCGTCCGGCCGCCGAGGGGGAGCGGGCGTGTGTGTGCGGACATGGATTAG |
| Transcript | >Hirsu2|1640 ATGATGACAGTTGGACGGGACGTGCCTGAAGATGCTCCGCTACTGGGACGGGATGAGCTACAGGACGAGCCGCTG CCCTCGTCGGCGGCGAGGCCGAAACCCTGGCTGGCCAAGACGCCTGGCACCATGATCCTCCTCATGACGATTGTC AAGTTCGGCGTCACGACGAGCGGTATGCTCATCCTCATCCCCATGTACCGGCTCATCGAAGACGTCCTCTGCCAC GCCCACTACCACGACAGCTCTCCCGGCCTCATCGATGAGATGAGGTGCAAGGGCGACGAGGTCCAGTCGCGGCTG GCCTTTATGGTCGGCTGGTTTGGCCTCTTCAACTCCATCCTGACTCTGCTCGTGTCTTTTCCATACGGGCTGCTC GCCGATCGCATCGGTCGCAAGCCAATGGCCCTGATGGCCTACGGCGGCACCACGGCCGCCTGCTACTTCGCCGCG CTCATGCTCGGCAGGATGCAGGCCCAGCTGCGCAGCAACCCGTACCTGCTGATGACCGTCTCCCTGTTCCTGCTC TTCGGCGGCGGCATCCCCGTCTTGATCGCCACGCTGTACGCCATGGCGGCCGACGTCAGCTCGGAAGAAGAAAAG GCCACGAGCTTTCTGTACCTGAGCTTTGGCGTCACCGCCGGCGTGCTCGTCGGCCCGCTGCTGGGCGGCCTTCTG ATGGAGAGGTACGGGCCGTGGGCGCCCATCTACGTCGTCCTGGCCATCTCGCCGGCCATCCTCGGCCTCATCGGG CTGATCCCGGAGACGCTGGTGGTCGAGGCCGCTCGACAAGGCCCCGAGCTCGGCCTCGGAGAGCACGTCGCCGAG GGGCTTCGCGACCTGGTCCGGTCCGTCGCCCTGGTCAGGGACCCCAACGTCCTGCTCGTCCTGGTCACGTTCCTC TTCCAGAACGCCAAGTTCGTGGCCTACACCTCGACCCTGACGCAGTACCTCAGCAAGCGGTTCGGCTGGCGGCTG GCGGAGACGAGCCTGCTGCTCTCGCCGCTCGGCATCGTCAACCTCGCCGTGCTGCTGGCCCTGTCCGGCGTGTCG CGGGTGCTGACGTCGTCGCCGCGCCTCCGCCTCGGCACCTTCGGCAAGGACCTGCTGCTGGCCCAGGCCTCGACC GTGCTCATCCTCGCCGGCGCCCTGCTGCAGGGCCTGAGCTCGGACGTCGGCCTGTTCCTGCTGGGCCTGTTCGTC GGCGCCCTGGGCTTCGCCGACGCGCCGCTCGCCCGCGCCGCCGTCTCGCACCACGTCGAGCCGCGACTCACCAGC CGGCTCTACGCCCTCGTCAGCATGACCGAGGCGCTCGGCTCTTTCCTCGCCGGGCCGGCTCTGGCCTGGCTCTTC CGCCAGGGCCTGCGCTGGGGGGGCCTCTGGATGGGCCTGCCTTGGCTGTACATTGCCTTTCTCTCCGTCGTCACG CTGGCCGTCTTGCTGTTCGTCCGGCCGCCGAGGGGGAGCGGGCGTGTGTGTGCGGACATGGATTAG |
| Gene | >Hirsu2|1640 ATGATGACAGTTGGACGGGACGTGCCTGAAGATGCTCCGCTACTGGGACGGGATGAGCTACAGGACGAGCCGCTG CCCTCGTCGGCGGCGAGGCCGAAACCCTGGCTGGCCAAGACGCCTGGCACCATGATCCTCCTCATGACGATTGTC AAGTTCGGCGTCACGACGAGCGGTATGCTCATCCTCATCCCCATGTACCGGCTCATCGAAGACGTCCTCTGCCAC GCCCACTACCACGACAGCTCTCCCGGCCTCATCGATGAGATGAGGTGCAAGGGCGACGAGGTCCAGTCGCGGCTG GCCTTTATGGTCGGCTGGTTTGGCCTCTTCAACTCCATCCTGAGTGCGCCCGCCCCCTTTTCGAGGAGCCTCGCA CCGCCCTCCCTATGCTGACGAGGTTTTATTTTATTTTTTCCACTCGTCTTGCTCCATTCCCCAGCTCTGCTCGTG TCTTTTCCATACGGGCTGCTCGCCGATCGCATCGGTCGCAAGCCAATGGCCCTGATGGCCTACGGCGGCACCACG GCCGCCTGCTACTTCGCCGCGCTCATGCTCGGCAGGATGCAGGCCCAGCTGCGCAGCAACCCGTACCTGCTGATG ACCGTCTCCCTGTTCCTGCTCTTCGGCGGCGGCATCCCCGTCTTGATCGCCACGCTGTACGCCATGGCGGCCGAC GTCAGCTCGGAAGAAGAAAAGTGAGGACGGCCCGAGGCGCGTTCCCCGATCGGTACGCACCACTCACACTGACTC TGCCGCGCAGGGCCACGAGCTTTCTGTACCTGAGCTTTGGCGTCACCGCCGGCGTGCTCGTCGGCCCGCTGCTGG GCGGCCTTCTGATGGAGAGGTACGGGCCGTGGGCGCCCATCTACGTCGTCCTGGCCATCTCGCCGGCCATCCTCG GCCTCATCGGGCTGATCCCGGAGACGCTGGTGGTCGAGGCCGCTCGACAAGGCCCCGAGCTCGGCCTCGGAGAGC ACGTCGCCGAGGGGCTTCGCGACCTGGTCCGGTCCGTCGCCCTGGTCAGGGACCCCAACGTCCTGCTCGTCCTGG TCACGTTCCTCTTCCAGAACGCCAAGTTCGTGGCCTACACCTCGACCCTGACGCAGTACCTCAGCAAGCGGTTCG GCTGGCGGCTGGCGGAGACGAGCCTGCTGCTCTCGCCGCTCGGCATCGTCAACCTCGCCGTGCTGCTGGCCCTGT CCGGCGTGTCGCGGGTGCTGACGTCGTCGCCGCGCCTCCGCCTCGGCACCTTCGGCAAGGACCTGCTGCTGGCCC AGGCCTCGACCGTGCTCATCCTCGCCGGCGCCCTGCTGCAGGGCCTGAGCTCGGACGTCGGCCTGTTCCTGCTGG GCCTGTTCGTCGGCGCCCTGGGCTTCGCCGACGCGCCGCTCGCCCGCGCCGCCGTCTCGCACCACGTCGAGCCGC GACTCACCAGCCGGCTCTACGCCCTCGTCAGCATGACCGAGGCGCTCGGCTCTTTCCTCGCCGGGCCGGCTCTGG CCTGGCTCTTCCGCCAGGGCCTGCGCTGGGGGGGCCTCTGGATGGGCCTGCCTTGGCTGTACATTGCCTTTCTCT CCGTCGTCACGCTGGCCGTCTTGCTGTTCGTCCGGCCGCCGAGGGGGAGCGGGCGTGTGTGTGCGGACATGGATT AG |