Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1613
Gene name
LocationContig_1361:82..481
Strand+
Gene length (bp)399
Transcript length (bp)399
Coding sequence length (bp)399
Protein length (aa) 133

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05686 Glyco_transf_90 Glycosyl transferase family 90 3.4E-11 4 116

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q5K8R6|CXT1_CRYNJ Beta-1,2-xylosyltransferase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CXT1 PE=1 SV=1 8 120 5.0E-20
sp|Q6UW63|KDEL1_HUMAN KDEL motif-containing protein 1 OS=Homo sapiens GN=KDELC1 PE=1 SV=1 5 115 1.0E-08
sp|Q9JHP7|KDEL1_MOUSE KDEL motif-containing protein 1 OS=Mus musculus GN=Kdelc1 PE=1 SV=1 5 115 1.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 49 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1613
MDAQYAHKFLPDADGNSFSARFRGFMRSSSLPLKATIYAEWHDDRLAPWLHFVPLDNTFRDLYAVLDYFADGAGG
PGDADARFIAEQGQAWANRVLRRDDMRLYVWRLLLEWARLCDDNRHSLAFVDDLAAR*
Coding >Hirsu2|1613
ATGGACGCCCAGTACGCGCACAAGTTCCTGCCGGACGCCGACGGCAACTCCTTCAGCGCCCGCTTCCGCGGCTTC
ATGCGCTCCTCCAGCCTGCCGCTCAAGGCCACCATCTACGCCGAGTGGCACGACGACCGCCTCGCGCCCTGGCTG
CACTTCGTCCCGCTCGACAACACCTTCCGCGACCTCTACGCCGTCCTCGACTACTTCGCCGACGGCGCCGGCGGG
CCCGGCGACGCCGACGCCCGCTTCATCGCCGAGCAGGGCCAGGCCTGGGCCAACCGCGTCCTGCGCCGCGACGAC
ATGCGCCTCTACGTCTGGCGCCTGCTGCTCGAGTGGGCTCGCCTCTGCGACGATAACCGCCACTCCCTTGCCTTT
GTCGACGACCTCGCCGCCCGCTGA
Transcript >Hirsu2|1613
ATGGACGCCCAGTACGCGCACAAGTTCCTGCCGGACGCCGACGGCAACTCCTTCAGCGCCCGCTTCCGCGGCTTC
ATGCGCTCCTCCAGCCTGCCGCTCAAGGCCACCATCTACGCCGAGTGGCACGACGACCGCCTCGCGCCCTGGCTG
CACTTCGTCCCGCTCGACAACACCTTCCGCGACCTCTACGCCGTCCTCGACTACTTCGCCGACGGCGCCGGCGGG
CCCGGCGACGCCGACGCCCGCTTCATCGCCGAGCAGGGCCAGGCCTGGGCCAACCGCGTCCTGCGCCGCGACGAC
ATGCGCCTCTACGTCTGGCGCCTGCTGCTCGAGTGGGCTCGCCTCTGCGACGATAACCGCCACTCCCTTGCCTTT
GTCGACGACCTCGCCGCCCGCTGA
Gene >Hirsu2|1613
ATGGACGCCCAGTACGCGCACAAGTTCCTGCCGGACGCCGACGGCAACTCCTTCAGCGCCCGCTTCCGCGGCTTC
ATGCGCTCCTCCAGCCTGCCGCTCAAGGCCACCATCTACGCCGAGTGGCACGACGACCGCCTCGCGCCCTGGCTG
CACTTCGTCCCGCTCGACAACACCTTCCGCGACCTCTACGCCGTCCTCGACTACTTCGCCGACGGCGCCGGCGGG
CCCGGCGACGCCGACGCCCGCTTCATCGCCGAGCAGGGCCAGGCCTGGGCCAACCGCGTCCTGCGCCGCGACGAC
ATGCGCCTCTACGTCTGGCGCCTGCTGCTCGAGTGGGCTCGCCTCTGCGACGATAACCGCCACTCCCTTGCCTTT
GTCGACGACCTCGCCGCCCGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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