© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|16 |
| Gene name | |
| Location | Contig_10:32774..33684 |
| Strand | - |
| Gene length (bp) | 910 |
| Transcript length (bp) | 852 |
| Coding sequence length (bp) | 852 |
| Protein length (aa) | 284 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01565 | FAD_binding_4 | FAD binding domain | 1.4E-20 | 138 | 245 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P08159|HDNO_ARTOX | 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxydans PE=1 SV=2 | 147 | 243 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.4112 | 0.415 | 0.8247 | 0.1253 | 0.4794 | 0.3876 | 0.3933 | 0.2444 | 0.3408 | 0.0176 |
| Orthofinder run ID | 4 |
| Orthogroup | 23 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|16 MEEGRNGQVNGRANERANVQANVQANEPANGRANVQANGQANGQVNGRANGQANGRANDQANGRADSQASGQEND PGPAPANNPAGGRQVTSLVPYIGDRHEALRRLIRSGAVLTIGDDDFIISLRRWSLTAVRIAGVVVQPGDAIEVSM ALQYARHRRMQVAVVSGGHSTGGASSTMGGLVIDLRRLNRVVVFENRVTFGAGCRWHDVDEACAGRGVATVGPTV NSVGVGGSALGGGFGWLTGRSSSPPKPRTGTSSGPSAAPAYTLAYVTPPPPFPPLPAT* |
| Coding | >Hirsu2|16 ATGGAAGAGGGCAGAAATGGCCAGGTGAATGGCCGGGCGAACGAGCGCGCGAATGTTCAGGCAAACGTTCAGGCG AATGAGCCGGCGAATGGCCGGGCGAATGTTCAGGCGAACGGCCAGGCGAATGGCCAGGTGAATGGCCGAGCGAAC GGCCAGGCAAACGGTCGAGCGAACGATCAGGCAAATGGTCGAGCGGACAGCCAGGCCAGCGGCCAGGAGAACGAC CCGGGACCTGCTCCGGCGAACAACCCGGCGGGTGGCCGGCAGGTGACGAGCCTTGTGCCCTACATCGGCGACCGG CACGAGGCGCTGCGCCGGCTTATCCGGAGCGGCGCCGTGCTGACCATCGGAGACGACGACTTCATAATAAGCCTC CGGCGCTGGAGCCTCACGGCCGTCCGCATAGCGGGCGTCGTAGTGCAGCCGGGCGACGCGATCGAGGTGTCGATG GCGCTGCAGTACGCGCGCCACCGGCGGATGCAAGTCGCCGTCGTCAGCGGCGGACACTCGACGGGCGGCGCGTCG TCGACGATGGGCGGCCTCGTCATCGACCTGCGCCGCCTCAACCGAGTCGTCGTCTTCGAAAACAGGGTCACCTTC GGCGCCGGGTGCCGATGGCACGACGTCGACGAGGCCTGCGCCGGGCGCGGCGTGGCCACCGTCGGCCCCACCGTC AACTCCGTCGGTGTCGGCGGCTCGGCCCTCGGCGGCGGCTTCGGCTGGCTGACGGGCCGATCGTCGTCGCCTCCG AAACCGCGAACCGGAACCTCTTCTGGGCCGTCCGCGGCGCCGGCATACACTTTGGCGTACGTGACCCCCCCCCCC CCCTTTCCCCCCCTCCCCGCCACTTGA |
| Transcript | >Hirsu2|16 ATGGAAGAGGGCAGAAATGGCCAGGTGAATGGCCGGGCGAACGAGCGCGCGAATGTTCAGGCAAACGTTCAGGCG AATGAGCCGGCGAATGGCCGGGCGAATGTTCAGGCGAACGGCCAGGCGAATGGCCAGGTGAATGGCCGAGCGAAC GGCCAGGCAAACGGTCGAGCGAACGATCAGGCAAATGGTCGAGCGGACAGCCAGGCCAGCGGCCAGGAGAACGAC CCGGGACCTGCTCCGGCGAACAACCCGGCGGGTGGCCGGCAGGTGACGAGCCTTGTGCCCTACATCGGCGACCGG CACGAGGCGCTGCGCCGGCTTATCCGGAGCGGCGCCGTGCTGACCATCGGAGACGACGACTTCATAATAAGCCTC CGGCGCTGGAGCCTCACGGCCGTCCGCATAGCGGGCGTCGTAGTGCAGCCGGGCGACGCGATCGAGGTGTCGATG GCGCTGCAGTACGCGCGCCACCGGCGGATGCAAGTCGCCGTCGTCAGCGGCGGACACTCGACGGGCGGCGCGTCG TCGACGATGGGCGGCCTCGTCATCGACCTGCGCCGCCTCAACCGAGTCGTCGTCTTCGAAAACAGGGTCACCTTC GGCGCCGGGTGCCGATGGCACGACGTCGACGAGGCCTGCGCCGGGCGCGGCGTGGCCACCGTCGGCCCCACCGTC AACTCCGTCGGTGTCGGCGGCTCGGCCCTCGGCGGCGGCTTCGGCTGGCTGACGGGCCGATCGTCGTCGCCTCCG AAACCGCGAACCGGAACCTCTTCTGGGCCGTCCGCGGCGCCGGCATACACTTTGGCGTACGTGACCCCCCCCCCC CCCTTTCCCCCCCTCCCCGCCACTTGA |
| Gene | >Hirsu2|16 ATGGAAGAGGGCAGAAATGGCCAGGTGAATGGCCGGGCGAACGAGCGCGCGAATGTTCAGGCAAACGTTCAGGCG AATGAGCCGGCGAATGGCCGGGCGAATGTTCAGGCGAACGGCCAGGCGAATGGCCAGGTGAATGGCCGAGCGAAC GGCCAGGCAAACGGTCGAGCGAACGATCAGGCAAATGGTCGAGCGGACAGCCAGGCCAGCGGCCAGGAGAACGAC CCGGGACCTGCTCCGGCGAACAACCCGGCGGGTGGCCGGCAGGTGACGAGCCTTGTGCCCTACATCGGCGACCGG CACGAGGCGCTGCGCCGGCTTATCCGGAGCGGCGCCGTGCTGACCATCGGAGACGACGACTTCATAATAAGCCTC CGGCGCTGGAGCCTCACGGCCGTCCGCATAGCGGGCGTCGTAGTGCAGCCGGGCGACGCGATCGAGGTGTCGATG GCGCTGCAGTACGCGCGCCACCGGCGGATGCAAGTCGCCGTCGTCAGCGGCGGACACTCGACGGGCGGCGCGTCG TCGACGATGGGCGGCCTCGTCATCGACCTGCGCCGCCTCAACCGAGTCGTCGTCTTCGAAAACAGGGTCACCTTC GGCGCCGGGTGCCGATGGCACGACGTCGACGAGGCCTGCGCCGGGCGCGGCGTGGCCACCGTCGGCCCCACCGTC AACTCCGTCGGTGTCGGCGGCTCGGCCCTCGGCGGCGGCTTCGGCTGGCTGACGGGCCGGTACGGGCTCTGCGTC GACAACCTCCTCAGCGTCGAGATGGTGCTGGCCAGCGGCGAGATCGTCGTCGCCTCCGAAACCGCGAACCGGAAC CTCTTCTGGGCCGTCCGCGGCGCCGGCATACACTTTGGCGTACGTGACCCCCCCCCCCCCCTTTCCCCCCCTCCC CGCCACTTGA |