Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1593
Gene name
LocationContig_1355:1001..2695
Strand-
Gene length (bp)1694
Transcript length (bp)1632
Coding sequence length (bp)1632
Protein length (aa) 544

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12230 PRP21_like_P Pre-mRNA splicing factor PRP21 like protein 9.6E-52 204 474
PF01805 Surp Surp module 6.8E-18 31 81
PF01805 Surp Surp module 5.2E-15 129 180

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O13900|SA114_SCHPO Pre-mRNA-splicing factor sap114 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap114 PE=1 SV=1 20 505 1.0E-75
sp|Q15459|SF3A1_HUMAN Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1 9 276 7.0E-52
sp|A2VDN6|SF3A1_BOVIN Splicing factor 3A subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1 9 276 8.0E-51
sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3A subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1 18 276 1.0E-50
sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2 22 276 4.0E-39
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Swissprot ID Swissprot Description Start End E-value
sp|O13900|SA114_SCHPO Pre-mRNA-splicing factor sap114 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap114 PE=1 SV=1 20 505 1.0E-75
sp|Q15459|SF3A1_HUMAN Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1 9 276 7.0E-52
sp|A2VDN6|SF3A1_BOVIN Splicing factor 3A subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1 9 276 8.0E-51
sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3A subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1 18 276 1.0E-50
sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2 22 276 4.0E-39
sp|Q86A14|SF3A1_DICDI Probable splicing factor 3A subunit 1 OS=Dictyostelium discoideum GN=sf3a1 PE=3 SV=1 128 276 4.0E-14
sp|P32524|PRP21_YEAST Pre-mRNA-splicing factor PRP21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP21 PE=1 SV=1 29 277 2.0E-12
sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2 391 500 3.0E-10
sp|A2VDN6|SF3A1_BOVIN Splicing factor 3A subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1 395 532 1.0E-08
sp|Q15459|SF3A1_HUMAN Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1 395 532 2.0E-08
sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3A subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1 395 532 2.0E-08
sp|P12297|SUWA_DROME Protein suppressor of white apricot OS=Drosophila melanogaster GN=su(w[a]) PE=1 SV=3 25 80 2.0E-06
sp|Q86A14|SF3A1_DICDI Probable splicing factor 3A subunit 1 OS=Dictyostelium discoideum GN=sf3a1 PE=3 SV=1 29 84 4.0E-06
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GO

GO Term Description Terminal node
GO:0006396 RNA processing Yes
GO:0003723 RNA binding Yes
GO:0008152 metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0008150 biological_process No
GO:0005488 binding No
GO:0071704 organic substance metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0003676 nucleic acid binding No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0009987 cellular process No
GO:0097159 organic cyclic compound binding No
GO:0090304 nucleic acid metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0044238 primary metabolic process No
GO:0003674 molecular_function No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044237 cellular metabolic process No
GO:0043170 macromolecule metabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.3351 0.8408 0.026 0.096 0.0332 0.0006 0.0835 0.03 0.0412 0.0045

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1736
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4245
Ophiocordyceps australis map64 (Brazil) OphauB2|732
Ophiocordyceps camponoti-floridani Ophcf2|03019
Ophiocordyceps camponoti-rufipedis Ophun1|3923
Ophiocordyceps kimflemingae Ophio5|2681
Ophiocordyceps subramaniannii Hirsu2|1593 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1593
MAASAANGEASSVLDNLKPPPGVVLPPREIRNVLEKTAGYVVRNGIVFEDRVRDKESTNPKFSFVNPSDAYYPFY
QWRLSEIKAGRGTEIASGRPGEGQMSAPEKPKGPTAPPEFQFSAKMPRINQKDLDVLKLTAQFTARFGRQWMAQL
HQRETGNPQFQFLASNHTFHNFFQHMVDQYSNVFKYHENPQLSRELLSESREMIKNPYIVYNRAVHRAEYAKHQE
TEKQKKEQHEEQKKQEFARIDWSDFIVVETVTFSDADETANLPGPTSLSELQYASLEDRNKASIGASMRIEEAMP
GEDMEPPPLAQMPAAGQQTSHALPARPGSAQHPPPPPVGAHPQLGQVSGPEAPPAHPPMTQEEEERQRIQERAEA
QARMHQAQAEARGGTAPMKIKENYVPRAAQRAATKQEPQMALCPNCKQLIAVNELESHMRIELLDPKWKEQKAKA
ESRYAHSNISHADVANNLKRLASQRSDVFDPMTGQAVSEDELARRKKAAMNSFDGNPEGKSQAHMNHLQTFNVEE
QIRAIHQKFADQKSADKK*
Coding >Hirsu2|1593
ATGGCAGCTTCTGCGGCCAACGGCGAGGCCTCCTCCGTCCTCGACAACCTCAAGCCGCCGCCCGGAGTCGTCCTC
CCGCCCCGCGAGATCCGCAACGTGCTGGAGAAGACGGCAGGCTACGTGGTGCGAAACGGCATCGTCTTCGAGGAT
CGCGTCCGCGACAAGGAGAGCACAAACCCAAAGTTCAGCTTCGTCAACCCCTCCGATGCCTACTACCCCTTCTAC
CAATGGCGCCTGAGCGAGATCAAGGCCGGCCGCGGTACCGAAATCGCCAGCGGCCGCCCTGGCGAAGGCCAAATG
TCGGCGCCAGAGAAGCCCAAGGGGCCGACCGCCCCGCCCGAGTTCCAGTTCTCGGCCAAGATGCCGCGCATCAAC
CAGAAGGACCTCGACGTTCTCAAGCTGACGGCGCAGTTTACCGCCAGGTTTGGGCGCCAGTGGATGGCGCAGCTG
CACCAGCGTGAGACGGGCAACCCGCAGTTCCAGTTTTTGGCATCCAACCACACCTTCCACAACTTCTTCCAGCAC
ATGGTCGACCAGTACTCCAATGTCTTCAAGTATCACGAGAACCCGCAGCTCAGTCGGGAGCTCCTCTCCGAATCC
CGAGAGATGATCAAGAACCCGTACATTGTTTACAACCGAGCCGTACACCGAGCCGAGTACGCCAAGCACCAGGAG
ACGGAGAAGCAGAAGAAGGAGCAGCACGAGGAGCAGAAGAAGCAGGAGTTTGCTCGTATCGACTGGAGCGACTTC
ATCGTCGTCGAGACCGTCACCTTCTCCGACGCCGACGAGACGGCCAACCTGCCGGGCCCGACGAGCCTCTCCGAG
CTGCAGTACGCCTCCCTGGAGGACAGAAACAAGGCGTCCATCGGCGCCAGCATGCGGATCGAGGAGGCCATGCCC
GGCGAAGACATGGAACCGCCGCCGCTCGCCCAGATGCCAGCCGCCGGCCAGCAGACAAGCCATGCTCTGCCCGCT
CGACCCGGCTCTGCGCAGCATCCGCCGCCGCCGCCAGTGGGCGCACATCCCCAACTCGGACAGGTGTCCGGGCCG
GAGGCTCCGCCGGCCCATCCGCCCATGACGCAGGAGGAGGAGGAGAGGCAGCGTATCCAGGAGAGAGCCGAGGCG
CAGGCTCGCATGCACCAGGCCCAAGCCGAGGCCCGAGGGGGGACCGCGCCCATGAAGATCAAGGAAAACTACGTG
CCTCGGGCCGCGCAGCGTGCGGCAACGAAGCAGGAACCGCAGATGGCCTTGTGCCCCAACTGCAAGCAGCTGATA
GCGGTGAACGAGCTGGAGTCTCACATGCGAATCGAACTTTTGGATCCGAAATGGAAGGAACAGAAAGCCAAGGCC
GAGTCTCGGTACGCGCACTCCAACATCTCGCACGCGGACGTGGCGAACAACCTTAAGAGGCTTGCGAGCCAGCGG
AGCGACGTTTTCGACCCGATGACGGGCCAGGCGGTCAGCGAGGACGAGCTCGCGCGGCGCAAGAAGGCGGCCATG
AACAGCTTCGATGGCAACCCCGAGGGCAAGAGCCAGGCGCACATGAACCACCTGCAGACGTTCAACGTGGAGGAG
CAGATCCGGGCCATCCACCAGAAGTTTGCCGATCAGAAGTCGGCCGACAAGAAGTGA
Transcript >Hirsu2|1593
ATGGCAGCTTCTGCGGCCAACGGCGAGGCCTCCTCCGTCCTCGACAACCTCAAGCCGCCGCCCGGAGTCGTCCTC
CCGCCCCGCGAGATCCGCAACGTGCTGGAGAAGACGGCAGGCTACGTGGTGCGAAACGGCATCGTCTTCGAGGAT
CGCGTCCGCGACAAGGAGAGCACAAACCCAAAGTTCAGCTTCGTCAACCCCTCCGATGCCTACTACCCCTTCTAC
CAATGGCGCCTGAGCGAGATCAAGGCCGGCCGCGGTACCGAAATCGCCAGCGGCCGCCCTGGCGAAGGCCAAATG
TCGGCGCCAGAGAAGCCCAAGGGGCCGACCGCCCCGCCCGAGTTCCAGTTCTCGGCCAAGATGCCGCGCATCAAC
CAGAAGGACCTCGACGTTCTCAAGCTGACGGCGCAGTTTACCGCCAGGTTTGGGCGCCAGTGGATGGCGCAGCTG
CACCAGCGTGAGACGGGCAACCCGCAGTTCCAGTTTTTGGCATCCAACCACACCTTCCACAACTTCTTCCAGCAC
ATGGTCGACCAGTACTCCAATGTCTTCAAGTATCACGAGAACCCGCAGCTCAGTCGGGAGCTCCTCTCCGAATCC
CGAGAGATGATCAAGAACCCGTACATTGTTTACAACCGAGCCGTACACCGAGCCGAGTACGCCAAGCACCAGGAG
ACGGAGAAGCAGAAGAAGGAGCAGCACGAGGAGCAGAAGAAGCAGGAGTTTGCTCGTATCGACTGGAGCGACTTC
ATCGTCGTCGAGACCGTCACCTTCTCCGACGCCGACGAGACGGCCAACCTGCCGGGCCCGACGAGCCTCTCCGAG
CTGCAGTACGCCTCCCTGGAGGACAGAAACAAGGCGTCCATCGGCGCCAGCATGCGGATCGAGGAGGCCATGCCC
GGCGAAGACATGGAACCGCCGCCGCTCGCCCAGATGCCAGCCGCCGGCCAGCAGACAAGCCATGCTCTGCCCGCT
CGACCCGGCTCTGCGCAGCATCCGCCGCCGCCGCCAGTGGGCGCACATCCCCAACTCGGACAGGTGTCCGGGCCG
GAGGCTCCGCCGGCCCATCCGCCCATGACGCAGGAGGAGGAGGAGAGGCAGCGTATCCAGGAGAGAGCCGAGGCG
CAGGCTCGCATGCACCAGGCCCAAGCCGAGGCCCGAGGGGGGACCGCGCCCATGAAGATCAAGGAAAACTACGTG
CCTCGGGCCGCGCAGCGTGCGGCAACGAAGCAGGAACCGCAGATGGCCTTGTGCCCCAACTGCAAGCAGCTGATA
GCGGTGAACGAGCTGGAGTCTCACATGCGAATCGAACTTTTGGATCCGAAATGGAAGGAACAGAAAGCCAAGGCC
GAGTCTCGGTACGCGCACTCCAACATCTCGCACGCGGACGTGGCGAACAACCTTAAGAGGCTTGCGAGCCAGCGG
AGCGACGTTTTCGACCCGATGACGGGCCAGGCGGTCAGCGAGGACGAGCTCGCGCGGCGCAAGAAGGCGGCCATG
AACAGCTTCGATGGCAACCCCGAGGGCAAGAGCCAGGCGCACATGAACCACCTGCAGACGTTCAACGTGGAGGAG
CAGATCCGGGCCATCCACCAGAAGTTTGCCGATCAGAAGTCGGCCGACAAGAAGTGA
Gene >Hirsu2|1593
ATGGCAGCTTCTGCGGCCAACGGCGAGGCCTCCTCCGTCCTCGACAACCTCAAGCCGCCGCCCGGAGTCGTCCTC
CCGCCCCGCGAGATCCGCAACGTGCTGGAGAAGACGGCAGGCTACGTGGTGCGAAACGGCATCGTCTTCGAGGAT
CGCGTCCGCGACAAGGAGAGCACAAACCCAAAGTTCAGCTTCGTCAACCCCTCCGATGCCTACTACCCCTTCTAC
CAATGGCGCCTGAGCGAGATCAAGGCCGGCCGCGGTACCGAAATCGCCAGCGGCCGCCCTGGCGAAGGCCAAATG
TCGGCGCCAGAGAAGCCCAAGGGGCCGACCGCCCCGCCCGAGTTCCAGTTCTCGGCCAAGATGCCGCGCATCAAC
CAGAAGGACCTCGACGTTCTCAAGCTGACGGCGCAGTTTACCGCCAGGTTTGGGCGCCAGTGGATGGCGCAGCTG
CACCAGCGTGAGACGGGCAACCCGCAGTTCCAGTTTTTGGCATCCAACCACACCTTCCACAACTTCTTCCAGCAC
ATGGTCGACCAGTACTCCAATGTCTTCAAGTATCACGAGAACCCGCAGCTCAGTCGGGAGCTCCTCTCCGAATCC
CGAGAGATGATCAAGAACCCGTACATTGTTTACAACCGAGCCGTACACCGAGCCGAGTACGCCAAGCACCAGGAG
ACGGAGAAGCAGAAGAAGGAGCAGCACGAGGAGCAGAAGAAGCAGGAGTTTGCTCGTATCGACTGGAGCGACTTC
ATCGTCGTCGAGACCGTCACCTTCTCCGACGCCGACGAGACGGCCAACCTGCCGGGCCCGACGAGCCTCTCCGAG
CTGCAGTACGCCTCCCTGGAGGACAGAAACAAGGCGTCCATCGGCGCCAGCATGCGGATCGAGGAGGCCATGCCC
GGCGAAGACATGGAACCGCCGCCGCTCGCCCAGATGCCAGCCGCCGGCCAGCAGACAAGCCATGCTCTGCCCGCT
CGACCCGGCTCTGCGCAGCATCCGCCGCCGCCGCCAGTGGGCGCACATCCCCAACTCGGACAGGTGTCCGGGCCG
GAGGCTCCGCCGGCCCATCCGCCCATGACGCAGGAGGAGGAGGAGAGGCAGCGTATCCAGGAGAGAGCCGAGGCG
CAGGCTCGCATGCACCAGGCCCAAGCCGAGGCCCGAGGGGGGACCGCGCCCATGAAGATCAAGGAAAACTACGTG
CCTCGGGCCGCGCAGCGTGCGGCAACGAAGCAGGAACCGCAGATGGCCTTGTGCCCCAACTGCAAGCAGCTGATA
GCGGTGAACGAGCTGGAGTCTCACATGCGAAGTAAGTCATGGTATGGGCCGGACGTGGCTGGAAGCGTTGTGCTG
ACCGATGTTTGCACCCAGTCGAACTTTTGGATCCGAAATGGAAGGAACAGAAAGCCAAGGCCGAGTCTCGGTACG
CGCACTCCAACATCTCGCACGCGGACGTGGCGAACAACCTTAAGAGGCTTGCGAGCCAGCGGAGCGACGTTTTCG
ACCCGATGACGGGCCAGGCGGTCAGCGAGGACGAGCTCGCGCGGCGCAAGAAGGCGGCCATGAACAGCTTCGATG
GCAACCCCGAGGGCAAGAGCCAGGCGCACATGAACCACCTGCAGACGTTCAACGTGGAGGAGCAGATCCGGGCCA
TCCACCAGAAGTTTGCCGATCAGAAGTCGGCCGACAAGAAGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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