© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1571 |
| Gene name | |
| Location | Contig_135:24394..24823 |
| Strand | + |
| Gene length (bp) | 429 |
| Transcript length (bp) | 357 |
| Coding sequence length (bp) | 357 |
| Protein length (aa) | 119 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07019 | EMC6 | EMC6 | 1.2E-29 | 23 | 113 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59764|YJMB_SCHPO | ER membrane protein complex subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1020.11c PE=3 SV=2 | 4 | 116 | 2.0E-15 |
| sp|Q3ZCG8|EMC6_BOVIN | ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1 | 11 | 116 | 6.0E-09 |
| sp|Q9CQW0|EMC6_MOUSE | ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1 | 11 | 116 | 2.0E-08 |
| sp|Q9BV81|EMC6_HUMAN | ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1 | 11 | 116 | 2.0E-08 |
| sp|Q68EU8|EMC6_XENLA | ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1 | 12 | 116 | 2.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59764|YJMB_SCHPO | ER membrane protein complex subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1020.11c PE=3 SV=2 | 4 | 116 | 2.0E-15 |
| sp|Q3ZCG8|EMC6_BOVIN | ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1 | 11 | 116 | 6.0E-09 |
| sp|Q9CQW0|EMC6_MOUSE | ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1 | 11 | 116 | 2.0E-08 |
| sp|Q9BV81|EMC6_HUMAN | ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1 | 11 | 116 | 2.0E-08 |
| sp|Q68EU8|EMC6_XENLA | ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1 | 12 | 116 | 2.0E-08 |
| sp|Q6GLC5|EMC6_XENTR | ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1 | 12 | 116 | 4.0E-08 |
| sp|Q12431|EMC6_YEAST | ER membrane protein complex subunit 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMC6 PE=1 SV=1 | 16 | 116 | 8.0E-07 |
| sp|Q6P0F0|EMC6_DANRE | ER membrane protein complex subunit 6 OS=Danio rerio GN=emc6 PE=3 SV=1 | 12 | 116 | 2.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 50 | 67 | 17 |
| 2 | 94 | 116 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1571 MLSERDYQLRPVVQDSVIHNSKTLSNLHSIVASLLGVSAGILGLESYHGFLFYLALSTLTTLLFYAIKVAPESRA EKRSVFDTGRYFHSAMDFWTGGIFGGLSGFVLTWTLFYGLVRA* |
| Coding | >Hirsu2|1571 ATGCTCTCCGAACGCGATTACCAGCTCCGTCCCGTGGTCCAGGACTCTGTCATACACAATTCCAAGACCCTGTCC AATCTCCACAGCATCGTCGCCTCCCTTCTCGGCGTCAGCGCTGGCATCCTCGGCCTCGAGTCCTACCACGGCTTC CTCTTCTATCTGGCCCTGTCCACCCTGACCACCCTCCTCTTCTACGCGATCAAGGTGGCGCCCGAGTCGCGGGCC GAGAAACGGTCCGTTTTCGACACGGGTCGCTACTTCCACTCCGCCATGGACTTCTGGACTGGCGGCATATTCGGA GGCCTGTCTGGATTTGTCTTGACCTGGACATTGTTCTACGGCTTGGTGAGGGCCTAG |
| Transcript | >Hirsu2|1571 ATGCTCTCCGAACGCGATTACCAGCTCCGTCCCGTGGTCCAGGACTCTGTCATACACAATTCCAAGACCCTGTCC AATCTCCACAGCATCGTCGCCTCCCTTCTCGGCGTCAGCGCTGGCATCCTCGGCCTCGAGTCCTACCACGGCTTC CTCTTCTATCTGGCCCTGTCCACCCTGACCACCCTCCTCTTCTACGCGATCAAGGTGGCGCCCGAGTCGCGGGCC GAGAAACGGTCCGTTTTCGACACGGGTCGCTACTTCCACTCCGCCATGGACTTCTGGACTGGCGGCATATTCGGA GGCCTGTCTGGATTTGTCTTGACCTGGACATTGTTCTACGGCTTGGTGAGGGCCTAG |
| Gene | >Hirsu2|1571 ATGCTCTCCGAACGCGATTACCAGCTCCGTCCCGTGGTCCAGGACTCTGTCATACACAATTCCAAGGTACGGCCC TCCTCGGCCCGCGTCCACGGGAGATGCTTCGCGATGCTGATGCGCGGCTCCGCCTGCACGCAGACCCTGTCCAAT CTCCACAGCATCGTCGCCTCCCTTCTCGGCGTCAGCGCTGGCATCCTCGGCCTCGAGTCCTACCACGGCTTCCTC TTCTATCTGGCCCTGTCCACCCTGACCACCCTCCTCTTCTACGCGATCAAGGTGGCGCCCGAGTCGCGGGCCGAG AAACGGTCCGTTTTCGACACGGGTCGCTACTTCCACTCCGCCATGGACTTCTGGACTGGCGGCATATTCGGAGGC CTGTCTGGATTTGTCTTGACCTGGACATTGTTCTACGGCTTGGTGAGGGCCTAG |