Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1537
Gene name
LocationContig_1341:10..232
Strand-
Gene length (bp)222
Transcript length (bp)222
Coding sequence length (bp)222
Protein length (aa) 74

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm Signal peptide 0.5 0.3707 0.6444 0.3115 0.3464 0.1047 0.2152 0.1688 0.2462 0.0122

SignalP

SignalP signal predicted Location Score
Yes 1 - 17 0.660228

Transmembrane Domains

Domain # Start End Length
1 5 24 19
2 34 53 19

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup8846
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|1537 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1537
MGFRLGFAFLIFFSGAGCPGLWPAPPLPPTPPPLRGPAAAAAAAAAAAAAAAVEARPSRRRTVPRRPAGAMMN*
Coding >Hirsu2|1537
ATGGGCTTTCGTTTGGGGTTTGCATTCTTGATTTTTTTTTCCGGCGCCGGATGTCCCGGTCTCTGGCCGGCTCCG
CCACTCCCCCCCACGCCTCCTCCCCTCAGGGGACCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCCGCC
GCCGCCGTCGAGGCCCGACCAAGCCGTCGACGGACCGTCCCTCGCAGGCCCGCCGGGGCCATGATGAACTAG
Transcript >Hirsu2|1537
ATGGGCTTTCGTTTGGGGTTTGCATTCTTGATTTTTTTTTCCGGCGCCGGATGTCCCGGTCTCTGGCCGGCTCCG
CCACTCCCCCCCACGCCTCCTCCCCTCAGGGGACCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCCGCC
GCCGCCGTCGAGGCCCGACCAAGCCGTCGACGGACCGTCCCTCGCAGGCCCGCCGGGGCCATGATGAACTAG
Gene >Hirsu2|1537
ATGGGCTTTCGTTTGGGGTTTGCATTCTTGATTTTTTTTTCCGGCGCCGGATGTCCCGGTCTCTGGCCGGCTCCG
CCACTCCCCCCCACGCCTCCTCCCCTCAGGGGACCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCCGCC
GCCGCCGTCGAGGCCCGACCAAGCCGTCGACGGACCGTCCCTCGCAGGCCCGCCGGGGCCATGATGAACTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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