Protein ID | Hirsu2|1537 |
Gene name | |
Location | Contig_1341:10..232 |
Strand | - |
Gene length (bp) | 222 |
Transcript length (bp) | 222 |
Coding sequence length (bp) | 222 |
Protein length (aa) | 74 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | Signal peptide | 0.5 | 0.3707 | 0.6444 | 0.3115 | 0.3464 | 0.1047 | 0.2152 | 0.1688 | 0.2462 | 0.0122 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 17 | 0.660228 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 5 | 24 | 19 |
2 | 34 | 53 | 19 |
Orthofinder run ID | 4 |
Orthogroup | 8846 |
Change Orthofinder run |
Species | Protein ID |
---|---|
Ophiocordyceps subramaniannii | Hirsu2|1537 (this protein) |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1537 MGFRLGFAFLIFFSGAGCPGLWPAPPLPPTPPPLRGPAAAAAAAAAAAAAAAVEARPSRRRTVPRRPAGAMMN* |
Coding | >Hirsu2|1537 ATGGGCTTTCGTTTGGGGTTTGCATTCTTGATTTTTTTTTCCGGCGCCGGATGTCCCGGTCTCTGGCCGGCTCCG CCACTCCCCCCCACGCCTCCTCCCCTCAGGGGACCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCCGCC GCCGCCGTCGAGGCCCGACCAAGCCGTCGACGGACCGTCCCTCGCAGGCCCGCCGGGGCCATGATGAACTAG |
Transcript | >Hirsu2|1537 ATGGGCTTTCGTTTGGGGTTTGCATTCTTGATTTTTTTTTCCGGCGCCGGATGTCCCGGTCTCTGGCCGGCTCCG CCACTCCCCCCCACGCCTCCTCCCCTCAGGGGACCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCCGCC GCCGCCGTCGAGGCCCGACCAAGCCGTCGACGGACCGTCCCTCGCAGGCCCGCCGGGGCCATGATGAACTAG |
Gene | >Hirsu2|1537 ATGGGCTTTCGTTTGGGGTTTGCATTCTTGATTTTTTTTTCCGGCGCCGGATGTCCCGGTCTCTGGCCGGCTCCG CCACTCCCCCCCACGCCTCCTCCCCTCAGGGGACCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCCGCC GCCGCCGTCGAGGCCCGACCAAGCCGTCGACGGACCGTCCCTCGCAGGCCCGCCGGGGCCATGATGAACTAG |