© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|1537 |
| Gene name | |
| Location | Contig_1341:10..232 |
| Strand | - |
| Gene length (bp) | 222 |
| Transcript length (bp) | 222 |
| Coding sequence length (bp) | 222 |
| Protein length (aa) | 74 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Signal peptide | 0.5 | 0.3707 | 0.6444 | 0.3115 | 0.3464 | 0.1047 | 0.2152 | 0.1688 | 0.2462 | 0.0122 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 17 | 0.660228 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 24 | 19 |
| 2 | 34 | 53 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 8846 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|1537 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1537 MGFRLGFAFLIFFSGAGCPGLWPAPPLPPTPPPLRGPAAAAAAAAAAAAAAAVEARPSRRRTVPRRPAGAMMN* |
| Coding | >Hirsu2|1537 ATGGGCTTTCGTTTGGGGTTTGCATTCTTGATTTTTTTTTCCGGCGCCGGATGTCCCGGTCTCTGGCCGGCTCCG CCACTCCCCCCCACGCCTCCTCCCCTCAGGGGACCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCCGCC GCCGCCGTCGAGGCCCGACCAAGCCGTCGACGGACCGTCCCTCGCAGGCCCGCCGGGGCCATGATGAACTAG |
| Transcript | >Hirsu2|1537 ATGGGCTTTCGTTTGGGGTTTGCATTCTTGATTTTTTTTTCCGGCGCCGGATGTCCCGGTCTCTGGCCGGCTCCG CCACTCCCCCCCACGCCTCCTCCCCTCAGGGGACCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCCGCC GCCGCCGTCGAGGCCCGACCAAGCCGTCGACGGACCGTCCCTCGCAGGCCCGCCGGGGCCATGATGAACTAG |
| Gene | >Hirsu2|1537 ATGGGCTTTCGTTTGGGGTTTGCATTCTTGATTTTTTTTTCCGGCGCCGGATGTCCCGGTCTCTGGCCGGCTCCG CCACTCCCCCCCACGCCTCCTCCCCTCAGGGGACCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCCGCC GCCGCCGTCGAGGCCCGACCAAGCCGTCGACGGACCGTCCCTCGCAGGCCCGCCGGGGCCATGATGAACTAG |