Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1521
Gene name
LocationContig_1338:5480..7185
Strand-
Gene length (bp)1705
Transcript length (bp)1374
Coding sequence length (bp)1374
Protein length (aa) 458

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04082 Fungal_trans Fungal specific transcription factor domain 5.1E-06 39 119

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O59741|YN25_SCHPO Uncharacterized transcriptional regulatory protein C530.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.05 PE=3 SV=2 40 178 6.0E-08

GO

GO Term Description Terminal node
GO:0006351 transcription, DNA-templated Yes
GO:0003677 DNA binding Yes
GO:0008270 zinc ion binding Yes
GO:0097159 organic cyclic compound binding No
GO:1901360 organic cyclic compound metabolic process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0009987 cellular process No
GO:1901363 heterocyclic compound binding No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0032774 RNA biosynthetic process No
GO:0003676 nucleic acid binding No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0009059 macromolecule biosynthetic process No
GO:0071704 organic substance metabolic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0005488 binding No
GO:0044249 cellular biosynthetic process No
GO:0009058 biosynthetic process No
GO:0008150 biological_process No
GO:0046483 heterocycle metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0043170 macromolecule metabolic process No
GO:0044237 cellular metabolic process No
GO:0046914 transition metal ion binding No
GO:1901576 organic substance biosynthetic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0003674 molecular_function No
GO:0019438 aromatic compound biosynthetic process No
GO:0018130 heterocycle biosynthetic process No
GO:0008152 metabolic process No
GO:0046872 metal ion binding No
GO:0043167 ion binding No
GO:0044238 primary metabolic process No
GO:0043169 cation binding No
GO:0016070 RNA metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0090304 nucleic acid metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 37 0.5

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1521
LADPVAVRVAEASVEAIHAETVVRSYLASGVTPMDASVLILTSAFFFLNDREQLAWRAIGAAMRLLQELGHHSSD
IWPSETGSEARDGAEKLFWAAYTMDRRLGYGLGFPFAIQDADIDHDPLFSVESPSTAYLKHMVSFCRIVSDVRYS
SVEASEATRDYLDFRILGWRRNLPHVLQFGGKDDRFDPTVENRGHYRLRLTLYLRANQIRATIHMKWAVRAGPGT
DLLNANNMAEVARDTIQILAGLADETDIYHSQHKTFNHYLETALSCLLLAVFCAQPADGASYLGDARAALDLVRR
LSTDSTVSRRLFDKLRRVQDIVDRLIARDAAGLGGGHHHGAAAAAAAMDRLTVVRQQADVVTALEQADDRQRRRQ
RQEEEADDEAEEPAVGRDKTARVTTSAVPRATTGDALDPRPAPQPAGGLCPDTSQPADDYMSLMGFPELGKILDL
YGDSFGF*
Coding >Hirsu2|1521
CTGGCCGACCCGGTCGCCGTCAGGGTCGCGGAAGCGAGCGTCGAGGCCATCCATGCCGAGACGGTCGTCCGGAGC
TATCTGGCGAGCGGCGTCACGCCCATGGACGCGTCTGTGTTGATCCTCACGAGCGCATTCTTCTTCCTCAACGAC
CGCGAGCAGCTGGCCTGGAGGGCGATCGGCGCTGCCATGCGCCTGCTCCAGGAGCTGGGCCATCACAGCTCGGAC
ATTTGGCCGTCTGAGACTGGCAGCGAGGCCCGGGACGGAGCCGAGAAGCTGTTCTGGGCCGCCTACACCATGGAT
CGGCGATTGGGCTACGGCCTGGGCTTTCCATTCGCCATCCAGGACGCAGACATCGATCACGACCCCCTCTTTTCA
GTCGAGTCTCCGTCCACGGCGTACCTGAAGCACATGGTTTCGTTCTGCCGAATCGTGTCCGACGTGCGGTACTCG
TCCGTCGAGGCGTCGGAAGCGACGCGCGACTATCTCGACTTCCGGATCCTGGGCTGGCGGCGCAACCTGCCGCAC
GTGCTCCAGTTCGGCGGCAAGGACGATAGGTTCGACCCGACGGTAGAGAATCGCGGACATTACCGGCTCCGGCTC
ACGCTTTATCTCCGAGCGAACCAGATTAGGGCGACGATTCACATGAAGTGGGCGGTGCGCGCCGGGCCGGGCACC
GACCTGCTCAACGCCAACAACATGGCCGAGGTGGCGCGCGACACGATCCAGATCCTGGCCGGGCTGGCCGACGAG
ACGGACATCTACCACTCGCAGCACAAGACCTTCAACCACTACCTCGAGACGGCCCTTTCGTGCCTGCTGCTCGCC
GTCTTCTGCGCCCAGCCGGCCGACGGCGCCTCCTACCTGGGCGACGCCCGCGCCGCCCTAGACCTGGTGCGGCGC
CTGTCGACCGACTCGACCGTCAGCCGGCGGCTGTTCGACAAGCTGCGGCGCGTGCAAGACATTGTCGACCGTTTG
ATCGCTCGAGACGCCGCCGGCCTGGGTGGGGGGCACCACCATGGCGCCGCCGCCGCCGCCGCCGCCATGGACCGG
CTGACGGTGGTGAGACAGCAGGCCGACGTGGTCACCGCCCTCGAGCAGGCAGACGACCGGCAGCGGCGGCGGCAG
CGGCAGGAGGAAGAAGCAGACGACGAGGCGGAGGAGCCGGCCGTCGGTCGAGACAAGACGGCGCGCGTGACGACC
TCGGCCGTGCCACGAGCAACGACTGGCGATGCCCTCGATCCGCGGCCCGCTCCTCAGCCAGCAGGCGGACTGTGC
CCAGACACGTCTCAGCCAGCTGACGACTACATGTCTCTGATGGGCTTTCCAGAACTCGGCAAGATTTTGGACTTG
TACGGCGATAGCTTTGGCTTCTAG
Transcript >Hirsu2|1521
CTGGCCGACCCGGTCGCCGTCAGGGTCGCGGAAGCGAGCGTCGAGGCCATCCATGCCGAGACGGTCGTCCGGAGC
TATCTGGCGAGCGGCGTCACGCCCATGGACGCGTCTGTGTTGATCCTCACGAGCGCATTCTTCTTCCTCAACGAC
CGCGAGCAGCTGGCCTGGAGGGCGATCGGCGCTGCCATGCGCCTGCTCCAGGAGCTGGGCCATCACAGCTCGGAC
ATTTGGCCGTCTGAGACTGGCAGCGAGGCCCGGGACGGAGCCGAGAAGCTGTTCTGGGCCGCCTACACCATGGAT
CGGCGATTGGGCTACGGCCTGGGCTTTCCATTCGCCATCCAGGACGCAGACATCGATCACGACCCCCTCTTTTCA
GTCGAGTCTCCGTCCACGGCGTACCTGAAGCACATGGTTTCGTTCTGCCGAATCGTGTCCGACGTGCGGTACTCG
TCCGTCGAGGCGTCGGAAGCGACGCGCGACTATCTCGACTTCCGGATCCTGGGCTGGCGGCGCAACCTGCCGCAC
GTGCTCCAGTTCGGCGGCAAGGACGATAGGTTCGACCCGACGGTAGAGAATCGCGGACATTACCGGCTCCGGCTC
ACGCTTTATCTCCGAGCGAACCAGATTAGGGCGACGATTCACATGAAGTGGGCGGTGCGCGCCGGGCCGGGCACC
GACCTGCTCAACGCCAACAACATGGCCGAGGTGGCGCGCGACACGATCCAGATCCTGGCCGGGCTGGCCGACGAG
ACGGACATCTACCACTCGCAGCACAAGACCTTCAACCACTACCTCGAGACGGCCCTTTCGTGCCTGCTGCTCGCC
GTCTTCTGCGCCCAGCCGGCCGACGGCGCCTCCTACCTGGGCGACGCCCGCGCCGCCCTAGACCTGGTGCGGCGC
CTGTCGACCGACTCGACCGTCAGCCGGCGGCTGTTCGACAAGCTGCGGCGCGTGCAAGACATTGTCGACCGTTTG
ATCGCTCGAGACGCCGCCGGCCTGGGTGGGGGGCACCACCATGGCGCCGCCGCCGCCGCCGCCGCCATGGACCGG
CTGACGGTGGTGAGACAGCAGGCCGACGTGGTCACCGCCCTCGAGCAGGCAGACGACCGGCAGCGGCGGCGGCAG
CGGCAGGAGGAAGAAGCAGACGACGAGGCGGAGGAGCCGGCCGTCGGTCGAGACAAGACGGCGCGCGTGACGACC
TCGGCCGTGCCACGAGCAACGACTGGCGATGCCCTCGATCCGCGGCCCGCTCCTCAGCCAGCAGGCGGACTGTGC
CCAGACACGTCTCAGCCAGCTGACGACTACATGTCTCTGATGGGCTTTCCAGAACTCGGCAAGATTTTGGACTTG
TACGGCGATAGCTTTGGCTTCTAG
Gene >Hirsu2|1521
CTGGCCGACCCGGTCGCCGTCAGGGTCGCGGAAGCGAGCGTCGAGGCCATCCATGCCGAGACGGTCGTCCGGAGC
TATCTGGCGAGCGGCGTCACGCCCATGGACGCGTCTGTGTTGATCCTCACGGTCAGCCATGCCCCTTCCCCGCCC
GCATCCTTACCGAGAGACATGGTGGAAAGCAGAGAGCGAGGTGTGAAGGATGGAAACGAGGTTGCGGAGACGAGG
AGATCAAGGAGCCGTCGACTGATCGCCGCAGCAAGGTCCGATAGAGCGCATTCTTCTTCCTCAACGACCGCGAGC
AGCTGGCCTGGAGGGCGATCGGCGCTGCCATGCGCCTGCTCCAGGAGCTGGGCCATCACAGCTCGGACATTTGGC
CGTCTGAGACTGGCAGCGAGGCCCGGGACGGAGCCGAGAAGCTGTTCTGGGCCGCCTACACCATGGATCGGCGAT
TGGGCTACGGCCTGGGCTTTCCATTCGCCATCCAGGACGCAGACATCGATCACGACCCCCTCTTTTCAGTATGTA
TGCTCTCTCGTCACTTGTCCCGACTTGTCACCACATACATGCTACATTCTACAGTACAGCATGGTATATACGTAT
ACTATATACATCCTATTCACCTACATACATCCTATTCACCTACATACACGTTGTACATGGCCTCGAACGAGAGAC
TGACCTCGTACCTCCCTCCCCCCCCCCAAAGGTCGAGTCTCCGTCCACGGCGTACCTGAAGCACATGGTTTCGTT
CTGCCGAATCGTGTCCGACGTGCGGTACTCGTCCGTCGAGGCGTCGGAAGCGACGCGCGACTATCTCGACTTCCG
GATCCTGGGCTGGCGGCGCAACCTGCCGCACGTGCTCCAGTTCGGCGGCAAGGACGATAGGTTCGACCCGACGGT
AGAGAATCGCGGACATTACCGGCTCCGGCTCACGCTTTATCTCCGAGCGAACCAGATTAGGGCGACGATTCACAT
GAAGTGGGCGGTGCGCGCCGGGCCGGGCACCGACCTGCTCAACGCCAACAACATGGCCGAGGTGGCGCGCGACAC
GATCCAGATCCTGGCCGGGCTGGCCGACGAGACGGACATCTACCACTCGCAGCACAAGACCTTCAACCACTACCT
CGAGACGGCCCTTTCGTGCCTGCTGCTCGCCGTCTTCTGCGCCCAGCCGGCCGACGGCGCCTCCTACCTGGGCGA
CGCCCGCGCCGCCCTAGACCTGGTGCGGCGCCTGTCGACCGACTCGACCGTCAGCCGGCGGCTGTTCGACAAGCT
GCGGCGCGTGCAAGACATTGTCGACCGTTTGATCGCTCGAGACGCCGCCGGCCTGGGTGGGGGGCACCACCATGG
CGCCGCCGCCGCCGCCGCCGCCATGGACCGGCTGACGGTGGTGAGACAGCAGGCCGACGTGGTCACCGCCCTCGA
GCAGGCAGACGACCGGCAGCGGCGGCGGCAGCGGCAGGAGGAAGAAGCAGACGACGAGGCGGAGGAGCCGGCCGT
CGGTCGAGACAAGACGGCGCGCGTGACGACCTCGGCCGTGCCACGAGCAACGACTGGCGATGCCCTCGATCCGCG
GCCCGCTCCTCAGCCAGCAGGCGGACTGTGCCCAGACACGTCTCAGCCAGCTGACGACTACATGTCTCTGATGGG
CTTTCCAGAACTCGGCAAGATTTTGGACTTGTACGGCGATAGCTTTGGCTTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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