Protein ID | Hirsu2|1515 |
Gene name | |
Location | Contig_1335:789..2187 |
Strand | - |
Gene length (bp) | 1398 |
Transcript length (bp) | 1296 |
Coding sequence length (bp) | 1296 |
Protein length (aa) | 432 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF03388 | Lectin_leg-like | Legume-like lectin family | 1.9E-23 | 60 | 238 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P43555|EMP47_YEAST | Protein EMP47 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMP47 PE=1 SV=1 | 11 | 236 | 9.0E-19 |
sp|Q2HJD1|LMA2L_BOVIN | VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1 | 60 | 238 | 6.0E-09 |
sp|Q5RCF0|LMA2L_PONAB | VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1 | 60 | 238 | 1.0E-08 |
sp|Q9H0V9|LMA2L_HUMAN | VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1 | 60 | 238 | 1.0E-08 |
sp|P59481|LMA2L_MOUSE | VIP36-like protein OS=Mus musculus GN=Lman2l PE=1 SV=1 | 60 | 253 | 2.0E-08 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P43555|EMP47_YEAST | Protein EMP47 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMP47 PE=1 SV=1 | 11 | 236 | 9.0E-19 |
sp|Q2HJD1|LMA2L_BOVIN | VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1 | 60 | 238 | 6.0E-09 |
sp|Q5RCF0|LMA2L_PONAB | VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1 | 60 | 238 | 1.0E-08 |
sp|Q9H0V9|LMA2L_HUMAN | VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1 | 60 | 238 | 1.0E-08 |
sp|P59481|LMA2L_MOUSE | VIP36-like protein OS=Mus musculus GN=Lman2l PE=1 SV=1 | 60 | 253 | 2.0E-08 |
sp|Q9HAT1|LMA1L_HUMAN | Protein ERGIC-53-like OS=Homo sapiens GN=LMAN1L PE=2 SV=2 | 63 | 245 | 2.0E-07 |
sp|O42707|YOC5_SCHPO | L-type lectin-like domain-containing protein C4F6.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4F6.05c PE=2 SV=2 | 77 | 238 | 3.0E-07 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016020 | membrane | Yes |
GO:0005575 | cellular_component | No |
GO:0110165 | cellular anatomical entity | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 22 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 397 | 419 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1515 MRGPALSSALAALLAAHGCRSEALIPELSFGHSGRLIPEDGPAGRIPHFAVSGQPWQPELLSNKVILTPVAPGNM RGAVWAEAPLERSVWTAEVEFRATGAERGGGNLNVWLAAQGARAVGSNSIYTVGKFDGLALVVDSHGGAGGMVRG FLNDGSVDFKQQSSVDRLAFGHCAYAYRNLGRPSVLRLRQSHDSFRLDVDGHACFETDKVSVPSGYHWGVTAATP DNPDSFELFKLVVSSDSTVSSGADKAEHHHAAAAAAAHHEHEAPQKQSQPPPPPPPDEPAAHFKTSQAQFEDLHN RLQGLMHHVSGAWAAVTELQRQAEQRHGETAAALDGLRRARDDAGDVPQRLRELEREVRAMRSDINAKLAAHHDS LQGYLTDHHATLAGTVARAVPGHGRLILVFVGSQLLLVAAYVVYKRRRASSPKKYL* |
Coding | >Hirsu2|1515 ATGCGAGGACCGGCCCTGTCGTCGGCGCTGGCCGCGCTGTTGGCCGCCCATGGCTGCCGTTCCGAGGCGCTCATC CCCGAGCTCAGCTTCGGCCATTCCGGACGATTGATCCCCGAAGACGGCCCCGCCGGACGGATCCCGCACTTCGCC GTGTCCGGGCAGCCGTGGCAGCCGGAGCTGCTGTCGAACAAGGTGATACTGACGCCCGTGGCGCCGGGCAACATG CGCGGGGCGGTGTGGGCGGAGGCGCCGCTGGAGCGCAGCGTGTGGACGGCCGAGGTCGAGTTCCGGGCGACCGGG GCGGAGCGCGGCGGCGGCAACCTCAACGTGTGGCTGGCGGCGCAGGGCGCGCGCGCCGTCGGCAGCAACAGCATC TACACGGTCGGCAAGTTCGACGGGCTGGCGCTCGTCGTCGACTCGCACGGCGGCGCCGGCGGCATGGTGCGCGGC TTCCTCAACGACGGCAGCGTCGACTTCAAGCAGCAGTCGAGCGTCGACCGGCTGGCCTTTGGCCACTGCGCCTAC GCCTACCGCAACCTGGGCCGGCCGTCGGTCCTGCGCCTGCGCCAGAGCCACGACAGCTTCCGCCTCGACGTCGAC GGCCACGCCTGCTTCGAGACGGACAAGGTCAGCGTCCCGTCCGGCTACCACTGGGGCGTCACGGCCGCGACGCCC GACAACCCGGACTCGTTCGAGCTCTTCAAGCTCGTCGTCAGCTCCGACTCGACCGTCTCCAGCGGCGCTGACAAG GCCGAGCACCACCACGCCGCCGCCGCCGCCGCCGCCCACCACGAGCACGAGGCGCCGCAGAAGCAGTCGCAGCCG CCGCCGCCGCCGCCGCCCGACGAGCCGGCCGCGCACTTCAAGACGTCGCAGGCCCAGTTCGAGGACCTGCACAAC CGGCTGCAGGGCCTGATGCACCACGTCTCGGGCGCCTGGGCCGCCGTGACGGAGCTGCAGCGCCAGGCGGAGCAG CGCCACGGCGAGACGGCGGCGGCGCTCGACGGCCTGCGCCGCGCCCGCGACGACGCCGGCGACGTGCCGCAGCGC CTGCGCGAGCTCGAGCGCGAGGTGCGCGCCATGCGCAGCGACATCAACGCCAAGCTGGCCGCCCACCACGACTCG CTGCAGGGCTACCTCACCGACCACCACGCCACCCTGGCCGGCACCGTCGCCCGCGCCGTCCCCGGCCACGGCCGC CTCATCCTCGTCTTCGTCGGCAGCCAGCTGCTCCTCGTCGCCGCCTACGTAGTCTACAAGCGCCGCCGCGCCAGC AGCCCCAAGAAGTATCTCTGA |
Transcript | >Hirsu2|1515 ATGCGAGGACCGGCCCTGTCGTCGGCGCTGGCCGCGCTGTTGGCCGCCCATGGCTGCCGTTCCGAGGCGCTCATC CCCGAGCTCAGCTTCGGCCATTCCGGACGATTGATCCCCGAAGACGGCCCCGCCGGACGGATCCCGCACTTCGCC GTGTCCGGGCAGCCGTGGCAGCCGGAGCTGCTGTCGAACAAGGTGATACTGACGCCCGTGGCGCCGGGCAACATG CGCGGGGCGGTGTGGGCGGAGGCGCCGCTGGAGCGCAGCGTGTGGACGGCCGAGGTCGAGTTCCGGGCGACCGGG GCGGAGCGCGGCGGCGGCAACCTCAACGTGTGGCTGGCGGCGCAGGGCGCGCGCGCCGTCGGCAGCAACAGCATC TACACGGTCGGCAAGTTCGACGGGCTGGCGCTCGTCGTCGACTCGCACGGCGGCGCCGGCGGCATGGTGCGCGGC TTCCTCAACGACGGCAGCGTCGACTTCAAGCAGCAGTCGAGCGTCGACCGGCTGGCCTTTGGCCACTGCGCCTAC GCCTACCGCAACCTGGGCCGGCCGTCGGTCCTGCGCCTGCGCCAGAGCCACGACAGCTTCCGCCTCGACGTCGAC GGCCACGCCTGCTTCGAGACGGACAAGGTCAGCGTCCCGTCCGGCTACCACTGGGGCGTCACGGCCGCGACGCCC GACAACCCGGACTCGTTCGAGCTCTTCAAGCTCGTCGTCAGCTCCGACTCGACCGTCTCCAGCGGCGCTGACAAG GCCGAGCACCACCACGCCGCCGCCGCCGCCGCCGCCCACCACGAGCACGAGGCGCCGCAGAAGCAGTCGCAGCCG CCGCCGCCGCCGCCGCCCGACGAGCCGGCCGCGCACTTCAAGACGTCGCAGGCCCAGTTCGAGGACCTGCACAAC CGGCTGCAGGGCCTGATGCACCACGTCTCGGGCGCCTGGGCCGCCGTGACGGAGCTGCAGCGCCAGGCGGAGCAG CGCCACGGCGAGACGGCGGCGGCGCTCGACGGCCTGCGCCGCGCCCGCGACGACGCCGGCGACGTGCCGCAGCGC CTGCGCGAGCTCGAGCGCGAGGTGCGCGCCATGCGCAGCGACATCAACGCCAAGCTGGCCGCCCACCACGACTCG CTGCAGGGCTACCTCACCGACCACCACGCCACCCTGGCCGGCACCGTCGCCCGCGCCGTCCCCGGCCACGGCCGC CTCATCCTCGTCTTCGTCGGCAGCCAGCTGCTCCTCGTCGCCGCCTACGTAGTCTACAAGCGCCGCCGCGCCAGC AGCCCCAAGAAGTATCTCTGA |
Gene | >Hirsu2|1515 ATGCGAGGACCGGCCCTGTCGTCGGCGCTGGCCGCGCTGTTGGCCGCCCATGGCTGCCGTTCCGAGGCGCTCATC CCCGAGCTCAGCTTCGGCCATTCCGGACGGTGAGTTTTTTTCTTGTCTCTCTGTCTCCCTCTGTCTCGCTCTCTC GGTTGTTGCCCGGAAGCTAACGATGACGTCTTTTTTTTTTTTCTCCTCTCTTCAAGATTGATCCCCGAAGACGGC CCCGCCGGACGGATCCCGCACTTCGCCGTGTCCGGGCAGCCGTGGCAGCCGGAGCTGCTGTCGAACAAGGTGATA CTGACGCCCGTGGCGCCGGGCAACATGCGCGGGGCGGTGTGGGCGGAGGCGCCGCTGGAGCGCAGCGTGTGGACG GCCGAGGTCGAGTTCCGGGCGACCGGGGCGGAGCGCGGCGGCGGCAACCTCAACGTGTGGCTGGCGGCGCAGGGC GCGCGCGCCGTCGGCAGCAACAGCATCTACACGGTCGGCAAGTTCGACGGGCTGGCGCTCGTCGTCGACTCGCAC GGCGGCGCCGGCGGCATGGTGCGCGGCTTCCTCAACGACGGCAGCGTCGACTTCAAGCAGCAGTCGAGCGTCGAC CGGCTGGCCTTTGGCCACTGCGCCTACGCCTACCGCAACCTGGGCCGGCCGTCGGTCCTGCGCCTGCGCCAGAGC CACGACAGCTTCCGCCTCGACGTCGACGGCCACGCCTGCTTCGAGACGGACAAGGTCAGCGTCCCGTCCGGCTAC CACTGGGGCGTCACGGCCGCGACGCCCGACAACCCGGACTCGTTCGAGCTCTTCAAGCTCGTCGTCAGCTCCGAC TCGACCGTCTCCAGCGGCGCTGACAAGGCCGAGCACCACCACGCCGCCGCCGCCGCCGCCGCCCACCACGAGCAC GAGGCGCCGCAGAAGCAGTCGCAGCCGCCGCCGCCGCCGCCGCCCGACGAGCCGGCCGCGCACTTCAAGACGTCG CAGGCCCAGTTCGAGGACCTGCACAACCGGCTGCAGGGCCTGATGCACCACGTCTCGGGCGCCTGGGCCGCCGTG ACGGAGCTGCAGCGCCAGGCGGAGCAGCGCCACGGCGAGACGGCGGCGGCGCTCGACGGCCTGCGCCGCGCCCGC GACGACGCCGGCGACGTGCCGCAGCGCCTGCGCGAGCTCGAGCGCGAGGTGCGCGCCATGCGCAGCGACATCAAC GCCAAGCTGGCCGCCCACCACGACTCGCTGCAGGGCTACCTCACCGACCACCACGCCACCCTGGCCGGCACCGTC GCCCGCGCCGTCCCCGGCCACGGCCGCCTCATCCTCGTCTTCGTCGGCAGCCAGCTGCTCCTCGTCGCCGCCTAC GTAGTCTACAAGCGCCGCCGCGCCAGCAGCCCCAAGAAGTATCTCTGA |