Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|1487
Gene name
Location	Contig_1328:364..2321
Strand	+
Gene length (bp)	1957
Transcript length (bp)	1839
Coding sequence length (bp)	1839
Protein length (aa)	613

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03732	Retrotrans_gag	Retrotransposon gag protein	5.7E-15	94	194
PF00098	zf-CCHC	Zinc knuckle	1.3E-06	278	295

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q8N8U3\|ZCHC5_HUMAN	Zinc finger CCHC domain-containing protein 5 OS=Homo sapiens GN=ZCCHC5 PE=2 SV=1	57	293	2.0E-14
sp\|A6NKG5\|RTL1_HUMAN	Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3	3	227	3.0E-14
sp\|Q52QI2\|RTL1_BOVIN	Retrotransposon-like protein 1 OS=Bos taurus GN=RTL1 PE=2 SV=2	19	227	5.0E-13
sp\|Q7M732\|RTL1_MOUSE	Retrotransposon-like protein 1 OS=Mus musculus GN=Rtl1 PE=2 SV=1	12	227	1.0E-11
sp\|Q7TN75\|PEG10_MOUSE	Retrotransposon-derived protein PEG10 OS=Mus musculus GN=Peg10 PE=1 SV=2	54	306	1.0E-10

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q8N8U3\|ZCHC5_HUMAN	Zinc finger CCHC domain-containing protein 5 OS=Homo sapiens GN=ZCCHC5 PE=2 SV=1	57	293	2.0E-14
sp\|A6NKG5\|RTL1_HUMAN	Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3	3	227	3.0E-14
sp\|Q52QI2\|RTL1_BOVIN	Retrotransposon-like protein 1 OS=Bos taurus GN=RTL1 PE=2 SV=2	19	227	5.0E-13
sp\|Q7M732\|RTL1_MOUSE	Retrotransposon-like protein 1 OS=Mus musculus GN=Rtl1 PE=2 SV=1	12	227	1.0E-11
sp\|Q7TN75\|PEG10_MOUSE	Retrotransposon-derived protein PEG10 OS=Mus musculus GN=Peg10 PE=1 SV=2	54	306	1.0E-10
sp\|Q86TG7\|PEG10_HUMAN	Retrotransposon-derived protein PEG10 OS=Homo sapiens GN=PEG10 PE=1 SV=2	54	306	2.0E-08

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GO

GO Term	Description	Terminal node
GO:0003676	nucleic acid binding	Yes
GO:0008270	zinc ion binding	Yes
GO:0046872	metal ion binding	No
GO:0043169	cation binding	No
GO:1901363	heterocyclic compound binding	No
GO:0043167	ion binding	No
GO:0097159	organic cyclic compound binding	No
GO:0003674	molecular_function	No
GO:0046914	transition metal ion binding	No
GO:0005488	binding	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 44	0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class (based on PFAM domains)
Zinc finger, CCHC-type

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|1487 MAPQESSTTAGPTLTPQEMMREIAYLRQQVSRLEGMNETHRVRDLGETVKPKQPGPFDGSHGTLRDFLTQLKAYH RFYPTQLSDHVAKVLHAGNCLTGTALAWFGPIMKDYLDNDEENRDDETKEIFRKFTNFEDAITKVFGTTDEEREA EQKLRGLRQRTSASEYAANFRQVTSQLDWDDEPLMSRFYEGLKEEVKDELYKEDRPNNLSDYIAMAVRIDDRQYA RRQQKKQGKGYWNTPYTSNRRANYKKKREEPIAYAHTTNPGKMDLDATTESGKKCFNCGKFGHFARECKKPKKKG PWTPVPEGGKQLNATSKARPNHDLMSWTACYDDDCYTHLSDKNATGWFPKAPKKKTLAMVLRRTPFKQAQLKKTG ISQQSTDDTSSGEELDTPDVSETEEVLPPTLRRETTVIGTTSEPAPLTDVQKSALIRYQPVPRGGDHAVAITAID TATALQSGWTPRGRLGDDPRTLPSHEHHAQVSWASCIYLTCMTHFRTKARNDAFPIRNGSLPISRPYGDRELRHW RIIKDYPHDKVMLLEPDSNTPIKCRDDTNLLSTCDSMTFTNAHTRNAQNICATKLATGISKQTAHQRITGKKEVT TRKDSPKENSLR*
Coding	>Hirsu2\|1487 ATGGCACCTCAAGAGTCATCCACCACTGCCGGACCTACCCTCACTCCACAGGAGATGATGCGGGAAATCGCCTAC CTCCGACAGCAGGTAAGTAGACTCGAAGGCATGAACGAAACTCACCGCGTTAGGGATCTCGGAGAGACAGTCAAA CCAAAGCAGCCAGGACCCTTTGACGGATCCCACGGCACGCTACGAGACTTTCTCACGCAACTCAAAGCCTACCAC AGGTTTTATCCCACACAGCTATCCGACCATGTAGCAAAGGTGTTACATGCTGGCAACTGCCTTACAGGCACCGCA TTGGCATGGTTTGGACCCATCATGAAGGATTATCTTGACAATGATGAGGAAAATCGCGATGACGAGACCAAAGAA ATATTCAGGAAGTTTACAAACTTCGAGGACGCCATCACCAAGGTATTTGGTACAACGGACGAAGAACGAGAGGCA GAACAGAAGCTCCGTGGACTACGCCAGCGGACCTCAGCCTCCGAGTACGCAGCCAACTTCCGACAGGTCACCTCA CAGCTCGACTGGGACGATGAACCTCTCATGTCTCGGTTCTACGAAGGACTCAAAGAAGAAGTCAAAGACGAGCTT TACAAGGAAGATCGACCAAACAACTTATCGGACTACATCGCTATGGCCGTACGGATCGACGACAGACAGTATGCA CGACGCCAGCAAAAGAAGCAAGGAAAAGGGTATTGGAATACGCCTTACACAAGTAATCGACGAGCGAACTATAAG AAGAAACGCGAAGAACCAATCGCTTACGCTCATACGACGAATCCAGGAAAAATGGACCTTGACGCTACTACTGAG AGCGGAAAGAAATGCTTCAATTGCGGAAAATTCGGACACTTTGCCAGGGAATGCAAGAAACCGAAGAAGAAAGGA CCTTGGACGCCAGTACCCGAGGGCGGAAAGCAACTCAACGCAACCAGCAAGGCAAGACCTAACCATGATCTTATG AGTTGGACAGCATGCTACGATGACGACTGCTACACGCACCTCAGTGATAAGAACGCAACTGGATGGTTCCCAAAG GCACCTAAGAAGAAAACACTTGCAATGGTTCTACGACGAACACCATTTAAGCAAGCACAGCTCAAGAAAACTGGA ATAAGCCAGCAGAGCACCGACGACACAAGCTCAGGAGAAGAGCTGGATACACCAGATGTGTCAGAAACCGAGGAG GTCTTACCACCTACCTTACGGCGAGAAACGACAGTGATTGGGACTACATCGGAACCAGCACCTCTCACAGATGTC CAGAAGTCAGCACTTATACGATATCAGCCGGTACCACGCGGAGGCGACCACGCTGTGGCTATAACCGCCATCGAC ACTGCTACTGCACTTCAGTCTGGATGGACCCCAAGAGGAAGACTCGGAGATGACCCACGGACACTGCCAAGTCAC GAACATCACGCACAAGTCTCATGGGCATCATGCATCTACCTTACTTGCATGACGCACTTTCGAACCAAGGCGCGA AACGACGCATTCCCCATTAGGAATGGCTCATTACCGATATCGCGACCATACGGAGACAGAGAACTGCGACACTGG AGGATCATCAAGGACTATCCTCACGACAAAGTCATGTTGCTCGAACCGGACAGCAACACGCCGATTAAATGTCGA GACGACACCAACTTGCTATCGACATGCGACTCGATGACATTCACGAATGCCCACACCCGGAATGCACAGAACATA TGCGCGACAAAGCTCGCGACTGGCATAAGCAAGCAAACGGCACACCAGCGGATTACTGGAAAGAAAGAAGTGACA ACCAGAAAAGATTCACCAAAGGAGAACTCACTCCGATAG
Transcript	>Hirsu2\|1487 ATGGCACCTCAAGAGTCATCCACCACTGCCGGACCTACCCTCACTCCACAGGAGATGATGCGGGAAATCGCCTAC CTCCGACAGCAGGTAAGTAGACTCGAAGGCATGAACGAAACTCACCGCGTTAGGGATCTCGGAGAGACAGTCAAA CCAAAGCAGCCAGGACCCTTTGACGGATCCCACGGCACGCTACGAGACTTTCTCACGCAACTCAAAGCCTACCAC AGGTTTTATCCCACACAGCTATCCGACCATGTAGCAAAGGTGTTACATGCTGGCAACTGCCTTACAGGCACCGCA TTGGCATGGTTTGGACCCATCATGAAGGATTATCTTGACAATGATGAGGAAAATCGCGATGACGAGACCAAAGAA ATATTCAGGAAGTTTACAAACTTCGAGGACGCCATCACCAAGGTATTTGGTACAACGGACGAAGAACGAGAGGCA GAACAGAAGCTCCGTGGACTACGCCAGCGGACCTCAGCCTCCGAGTACGCAGCCAACTTCCGACAGGTCACCTCA CAGCTCGACTGGGACGATGAACCTCTCATGTCTCGGTTCTACGAAGGACTCAAAGAAGAAGTCAAAGACGAGCTT TACAAGGAAGATCGACCAAACAACTTATCGGACTACATCGCTATGGCCGTACGGATCGACGACAGACAGTATGCA CGACGCCAGCAAAAGAAGCAAGGAAAAGGGTATTGGAATACGCCTTACACAAGTAATCGACGAGCGAACTATAAG AAGAAACGCGAAGAACCAATCGCTTACGCTCATACGACGAATCCAGGAAAAATGGACCTTGACGCTACTACTGAG AGCGGAAAGAAATGCTTCAATTGCGGAAAATTCGGACACTTTGCCAGGGAATGCAAGAAACCGAAGAAGAAAGGA CCTTGGACGCCAGTACCCGAGGGCGGAAAGCAACTCAACGCAACCAGCAAGGCAAGACCTAACCATGATCTTATG AGTTGGACAGCATGCTACGATGACGACTGCTACACGCACCTCAGTGATAAGAACGCAACTGGATGGTTCCCAAAG GCACCTAAGAAGAAAACACTTGCAATGGTTCTACGACGAACACCATTTAAGCAAGCACAGCTCAAGAAAACTGGA ATAAGCCAGCAGAGCACCGACGACACAAGCTCAGGAGAAGAGCTGGATACACCAGATGTGTCAGAAACCGAGGAG GTCTTACCACCTACCTTACGGCGAGAAACGACAGTGATTGGGACTACATCGGAACCAGCACCTCTCACAGATGTC CAGAAGTCAGCACTTATACGATATCAGCCGGTACCACGCGGAGGCGACCACGCTGTGGCTATAACCGCCATCGAC ACTGCTACTGCACTTCAGTCTGGATGGACCCCAAGAGGAAGACTCGGAGATGACCCACGGACACTGCCAAGTCAC GAACATCACGCACAAGTCTCATGGGCATCATGCATCTACCTTACTTGCATGACGCACTTTCGAACCAAGGCGCGA AACGACGCATTCCCCATTAGGAATGGCTCATTACCGATATCGCGACCATACGGAGACAGAGAACTGCGACACTGG AGGATCATCAAGGACTATCCTCACGACAAAGTCATGTTGCTCGAACCGGACAGCAACACGCCGATTAAATGTCGA GACGACACCAACTTGCTATCGACATGCGACTCGATGACATTCACGAATGCCCACACCCGGAATGCACAGAACATA TGCGCGACAAAGCTCGCGACTGGCATAAGCAAGCAAACGGCACACCAGCGGATTACTGGAAAGAAAGAAGTGACA ACCAGAAAAGATTCACCAAAGGAGAACTCACTCCGATAG
Gene	>Hirsu2\|1487 ATGGCACCTCAAGAGTCATCCACCACTGCCGGACCTACCCTCACTCCACAGGAGATGATGCGGGAAATCGCCTAC CTCCGACAGCAGGTAAGTAGACTCGAAGGCATGAACGAAACTCACCGCGTTAGGGATCTCGGAGAGACAGTCAAA CCAAAGCAGCCAGGACCCTTTGACGGATCCCACGGCACGCTACGAGACTTTCTCACGCAACTCAAAGCCTACCAC AGGTTTTATCCCACACAGCTATCCGACCATGTAGCAAAGGTGTTACATGCTGGCAACTGCCTTACAGGCACCGCA TTGGCATGGTTTGGACCCATCATGAAGGATTATCTTGACAATGATGAGGAAAATCGCGATGACGAGACCAAAGAA ATATTCAGGAAGTTTACAAACTTCGAGGACGCCATCACCAAGGTATTTGGTACAACGGACGAAGAACGAGAGGCA GAACAGAAGCTCCGTGGACTACGCCAGCGGACCTCAGCCTCCGAGTACGCAGCCAACTTCCGACAGGTCACCTCA CAGCTCGACTGGGACGATGAACCTCTCATGTCTCGGTTCTACGAAGGACTCAAAGAAGAAGTCAAAGACGAGCTT TACAAGGAAGATCGACCAAACAACTTATCGGACTACATCGCTATGGCCGTACGGATCGACGACAGACAGTATGCA CGACGCCAGCAAAAGAAGCAAGGAAAAGGGTATTGGAATACGCCTTACACAAGTAATCGACGAGCGAACTATAAG AAGAAACGCGAAGAACCAATCGCTTACGCTCATACGACGAATCCAGGAAAAATGGACCTTGACGCTACTACTGAG AGCGGAAAGAAATGCTTCAATTGCGGAAAATTCGGACACTTTGCCAGGGAATGCAAGAAACCGAAGAAGAAAGGA CCTTGGACGCCAGTACCCGAGGGCGGAAAGCAACTCAACGCAACCAGCAAGGCAAGACCTAACCATGATCTTATG AGTTGGACAGCATGCTACGATGACGACTGCTACACGCACCTCAGTGATAAGAACGCAACTGGATGGTTCCCAAAG GCACCTAAGAAGAAAACACTTGCAATGGTTCTACGACGAACACCATTTAAGCAAGCACAGCTCAAGAAAACTGGA ATAAGCCAGCAGAGCACCGACGACACAAGCTCAGGAGAAGAGCTGGATACACCAGATGTGTCAGAAACCGAGGAG GTCTTACCACCTACCTTACGGCGAGAAACGACAGTGATTGGGACTACATCGGAACCAGCACCTCTCACAGATGTC CAGAAGTCAGCACTTATACGATATCAGCCGGTACCACGCGGAGGCGACCACGCTGTGGCTATAACCGCCATCGAC ACTGCTACTGCACTTCAGTCTGGATGGACCCCAAGAGGAAGACTCGGAGATGACCCACGGACACTGCCAAGTCAC GAACATCACGCACAAGTCTCATGGGCATCATGCATCTACCTTACTTGCATGACGCACTTTCGAACCAAGGCGCGA AACGACGCATTCCCCATTAGGAATGGCTCATTACCGATATCGCGACCATACGGAGACAGAGAACTGCGACACTGG AGGATCATCAAGGACTATCCTCACGACAAAGTCATGTTGCTCGAACCGGACAGCAACACGCCGATTAAATGTCGA GACGACACCAACTTGCTATCGACATGCGACTCGATGACATGTCAGATACACGAATTCGGGAAAGTTTGGGAATGG CATAAATATACGAAGGCAGGACTTCGGAAGCCATCAATCCCGCAAGGACTCCTAATGTCCATTAATTGCGAAGGA TTCGATAGTCACGAATGCCCACACCCGGAATGCACAGAACATATGCGCGACAAAGCTCGCGACTGGCATAAGCAA GCAAACGGCACACCAGCGGATTACTGGAAAGAAAGAAGTGACAACCAGAAAAGATTCACCAAAGGAGAACTCACT CCGATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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