© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1482 |
| Gene name | |
| Location | Contig_1326:85..2097 |
| Strand | + |
| Gene length (bp) | 2012 |
| Transcript length (bp) | 1389 |
| Coding sequence length (bp) | 1389 |
| Protein length (aa) | 463 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02535 | Zip | ZIP Zinc transporter | 9.0E-13 | 118 | 219 |
| PF02535 | Zip | ZIP Zinc transporter | 3.9E-14 | 351 | 458 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12436|ZRT2_YEAST | Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT2 PE=1 SV=1 | 221 | 462 | 3.0E-20 |
| sp|O94639|ZRT1_SCHPO | Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrt1 PE=1 SV=1 | 221 | 462 | 7.0E-19 |
| sp|P32804|ZRT1_YEAST | Zinc-regulated transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT1 PE=1 SV=1 | 115 | 293 | 1.0E-11 |
| sp|Q9SLG3|ZIP3_ARATH | Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1 | 98 | 462 | 2.0E-11 |
| sp|O81850|IRT2_ARATH | Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1 | 101 | 287 | 4.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12436|ZRT2_YEAST | Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT2 PE=1 SV=1 | 221 | 462 | 3.0E-20 |
| sp|O94639|ZRT1_SCHPO | Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrt1 PE=1 SV=1 | 221 | 462 | 7.0E-19 |
| sp|P32804|ZRT1_YEAST | Zinc-regulated transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT1 PE=1 SV=1 | 115 | 293 | 1.0E-11 |
| sp|Q9SLG3|ZIP3_ARATH | Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1 | 98 | 462 | 2.0E-11 |
| sp|O81850|IRT2_ARATH | Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1 | 101 | 287 | 4.0E-11 |
| sp|Q8S3W4|ZIP8_ARATH | Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1 | 104 | 287 | 3.0E-10 |
| sp|O64738|ZIP6_ARATH | Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=3 SV=1 | 94 | 294 | 7.0E-10 |
| sp|Q0DHE3|ZIP9_ORYSJ | Zinc transporter 9 OS=Oryza sativa subsp. japonica GN=ZIP9 PE=3 SV=3 | 354 | 462 | 1.0E-08 |
| sp|Q38856|IRT1_ARATH | Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=2 | 100 | 287 | 1.0E-08 |
| sp|Q8S3W4|ZIP8_ARATH | Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1 | 356 | 462 | 6.0E-08 |
| sp|Q38856|IRT1_ARATH | Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=2 | 356 | 462 | 7.0E-08 |
| sp|Q12436|ZRT2_YEAST | Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT2 PE=1 SV=1 | 118 | 215 | 8.0E-08 |
| sp|A3BI11|ZIP8_ORYSJ | Zinc transporter 8 OS=Oryza sativa subsp. japonica GN=ZIP8 PE=2 SV=1 | 352 | 462 | 1.0E-07 |
| sp|O23039|ZIP5_ARATH | Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1 | 360 | 462 | 1.0E-07 |
| sp|O82643|ZIP9_ARATH | Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1 | 360 | 462 | 2.0E-07 |
| sp|Q8W245|ZIP10_ARATH | Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=1 SV=2 | 356 | 462 | 2.0E-07 |
| sp|O04089|ZIP4_ARATH | Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1 | 360 | 462 | 2.0E-07 |
| sp|Q75HB1|IRT1_ORYSJ | Fe(2+) transport protein 1 OS=Oryza sativa subsp. japonica GN=IRT1 PE=2 SV=1 | 360 | 462 | 2.0E-07 |
| sp|Q6L8G0|ZIP5_ORYSJ | Zinc transporter 5 OS=Oryza sativa subsp. japonica GN=ZIP5 PE=2 SV=1 | 352 | 462 | 3.0E-07 |
| sp|Q8LE59|IRT3_ARATH | Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=3 | 360 | 418 | 5.0E-07 |
| sp|O94639|ZRT1_SCHPO | Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrt1 PE=1 SV=1 | 83 | 219 | 6.0E-07 |
| sp|Q6L8G1|IRT2_ORYSJ | Fe(2+) transport protein 2 OS=Oryza sativa subsp. japonica GN=IRT2 PE=2 SV=1 | 355 | 462 | 2.0E-06 |
| sp|Q5Z653|ZIP10_ORYSJ | Zinc transporter 10 OS=Oryza sativa subsp. japonica GN=ZIP10 PE=3 SV=2 | 360 | 418 | 5.0E-06 |
| sp|Q6L8F7|ZIP7_ORYSJ | Zinc transporter 7 OS=Oryza sativa subsp. japonica GN=ZIP7 PE=2 SV=1 | 360 | 462 | 7.0E-06 |
| sp|O81850|IRT2_ARATH | Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1 | 356 | 462 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030001 | metal ion transport | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005215 | transporter activity | No |
| GO:0051179 | localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006812 | cation transport | No |
| GO:0006810 | transport | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 118 | 140 | 22 |
| 2 | 150 | 172 | 22 |
| 3 | 193 | 215 | 22 |
| 4 | 242 | 264 | 22 |
| 5 | 271 | 293 | 22 |
| 6 | 360 | 379 | 19 |
| 7 | 388 | 410 | 22 |
| 8 | 436 | 458 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1482 LHGTQLFCMAGTADVQMLTTMTQTTDVPVSFTGCHNHGPATYCIGANGDDVELGSAEGEAAPPGGQAHDHDHAAG DAAGGGHRHCHFHAGVEHCVGGGESESGPAQCDGVKRDYNVPLRVGLLFAIMATSALGVFGPILIQSYLPRKLDL VFVILKQFGTGIIISTAFVHLYTHASLMFANKCIGELKYESTTSAIVMAGLFLSFVVEYIGQRIVQAKFKSSAAV TPEERAKAFLSSEVVNILVMEAGILFHSLLIGLTLVVAGDSFFVTLFVVILFHQVFEGLALGTRIATVGTVNHAS GGAGAASSASASSLTGGGHGDEAVGREDVDKSHGLATAGGPSSALAGRSLGLSMKKKLGLAALFAFVTPIGMAIG IGVLQKFNGNDKSTLIAIGTLDALSAGILVWVGVVEMWAADWMGGGGGGHGHSHKAELADAGLLTTALALFGLLA GMVLMSVLGKWA* |
| Coding | >Hirsu2|1482 CTGCACGGGACCCAGCTCTTCTGCATGGCCGGCACGGCTGATGTCCAAATGCTCACCACCATGACCCAGACGACC GACGTGCCCGTCTCCTTCACCGGCTGCCACAACCACGGGCCTGCCACGTATTGCATCGGCGCCAACGGCGACGAC GTCGAGCTCGGCTCGGCCGAGGGAGAGGCGGCGCCGCCCGGAGGCCAGGCCCACGACCACGACCACGCGGCCGGA GACGCGGCCGGCGGCGGCCACCGGCATTGCCACTTCCATGCCGGCGTCGAGCACTGCGTGGGAGGCGGCGAGAGC GAGTCCGGCCCGGCCCAGTGCGACGGCGTCAAGCGCGACTACAACGTGCCCCTACGCGTCGGGCTTCTCTTCGCC ATCATGGCCACCAGCGCCCTCGGCGTCTTCGGCCCCATCCTGATCCAGAGCTACTTGCCGCGGAAGCTCGACCTC GTCTTCGTCATCCTCAAGCAGTTCGGCACCGGCATCATTATCTCCACCGCCTTCGTCCATCTGTACACGCATGCC TCGCTCATGTTCGCCAACAAGTGCATCGGCGAGCTCAAGTACGAGTCGACGACGTCTGCCATCGTCATGGCCGGC CTGTTCCTGTCCTTCGTCGTCGAGTACATCGGCCAGCGCATCGTCCAGGCCAAGTTCAAGTCGTCCGCGGCCGTC ACGCCTGAGGAGCGAGCCAAGGCCTTTCTGTCGAGCGAGGTGGTCAACATCCTGGTCATGGAAGCCGGCATCCTC TTCCACTCGTTGCTCATCGGCCTCACCCTGGTCGTGGCCGGCGACTCCTTCTTCGTGACGCTGTTCGTCGTCATC CTCTTCCACCAAGTGTTCGAAGGCCTCGCGCTCGGCACCCGGATCGCCACCGTCGGCACCGTCAACCACGCCTCG GGCGGGGCGGGGGCGGCGTCGTCGGCGTCGGCGTCGTCGCTGACGGGCGGCGGCCACGGCGACGAGGCCGTCGGG CGCGAGGACGTGGATAAGTCGCACGGCCTCGCCACGGCGGGCGGCCCGTCGTCGGCGCTGGCGGGCAGGAGCCTC GGGCTGTCGATGAAGAAGAAGCTCGGACTGGCGGCGCTGTTCGCCTTCGTCACGCCCATCGGCATGGCCATCGGC ATTGGGGTGCTGCAGAAGTTCAACGGCAACGACAAGTCGACGCTCATCGCCATCGGCACCCTCGACGCCCTCTCG GCCGGCATCCTCGTCTGGGTCGGCGTCGTCGAGATGTGGGCCGCCGACTGGATGGGCGGCGGCGGCGGCGGCCAC GGCCACAGCCACAAGGCCGAGCTGGCAGACGCCGGCCTGCTGACGACGGCCCTCGCCCTCTTCGGCCTCCTGGCC GGCATGGTCCTGATGAGCGTGCTGGGCAAGTGGGCCTAG |
| Transcript | >Hirsu2|1482 CTGCACGGGACCCAGCTCTTCTGCATGGCCGGCACGGCTGATGTCCAAATGCTCACCACCATGACCCAGACGACC GACGTGCCCGTCTCCTTCACCGGCTGCCACAACCACGGGCCTGCCACGTATTGCATCGGCGCCAACGGCGACGAC GTCGAGCTCGGCTCGGCCGAGGGAGAGGCGGCGCCGCCCGGAGGCCAGGCCCACGACCACGACCACGCGGCCGGA GACGCGGCCGGCGGCGGCCACCGGCATTGCCACTTCCATGCCGGCGTCGAGCACTGCGTGGGAGGCGGCGAGAGC GAGTCCGGCCCGGCCCAGTGCGACGGCGTCAAGCGCGACTACAACGTGCCCCTACGCGTCGGGCTTCTCTTCGCC ATCATGGCCACCAGCGCCCTCGGCGTCTTCGGCCCCATCCTGATCCAGAGCTACTTGCCGCGGAAGCTCGACCTC GTCTTCGTCATCCTCAAGCAGTTCGGCACCGGCATCATTATCTCCACCGCCTTCGTCCATCTGTACACGCATGCC TCGCTCATGTTCGCCAACAAGTGCATCGGCGAGCTCAAGTACGAGTCGACGACGTCTGCCATCGTCATGGCCGGC CTGTTCCTGTCCTTCGTCGTCGAGTACATCGGCCAGCGCATCGTCCAGGCCAAGTTCAAGTCGTCCGCGGCCGTC ACGCCTGAGGAGCGAGCCAAGGCCTTTCTGTCGAGCGAGGTGGTCAACATCCTGGTCATGGAAGCCGGCATCCTC TTCCACTCGTTGCTCATCGGCCTCACCCTGGTCGTGGCCGGCGACTCCTTCTTCGTGACGCTGTTCGTCGTCATC CTCTTCCACCAAGTGTTCGAAGGCCTCGCGCTCGGCACCCGGATCGCCACCGTCGGCACCGTCAACCACGCCTCG GGCGGGGCGGGGGCGGCGTCGTCGGCGTCGGCGTCGTCGCTGACGGGCGGCGGCCACGGCGACGAGGCCGTCGGG CGCGAGGACGTGGATAAGTCGCACGGCCTCGCCACGGCGGGCGGCCCGTCGTCGGCGCTGGCGGGCAGGAGCCTC GGGCTGTCGATGAAGAAGAAGCTCGGACTGGCGGCGCTGTTCGCCTTCGTCACGCCCATCGGCATGGCCATCGGC ATTGGGGTGCTGCAGAAGTTCAACGGCAACGACAAGTCGACGCTCATCGCCATCGGCACCCTCGACGCCCTCTCG GCCGGCATCCTCGTCTGGGTCGGCGTCGTCGAGATGTGGGCCGCCGACTGGATGGGCGGCGGCGGCGGCGGCCAC GGCCACAGCCACAAGGCCGAGCTGGCAGACGCCGGCCTGCTGACGACGGCCCTCGCCCTCTTCGGCCTCCTGGCC GGCATGGTCCTGATGAGCGTGCTGGGCAAGTGGGCCTAG |
| Gene | >Hirsu2|1482 CTGCACGGGACCCAGCTGTCCGTCTTCCCCCTCCGCTTCCCCTCGCGCCCGCATCGCGAAAGCCCCCCTTTTGAA CATTGTTTGTAATTGGTGTTGTTTTGTTCTTTTTGGAACCCGGTGCGCATCCATCGTGCGATTGCGTTGCTAACT CGTTATCGGTCGGGAAAAACAGCTTCTGCATGGCCGGCACGGCTGATGTCCAAATGCTCACCACCATGACCCAGA CGACCGACGTGCCCGTCTCCTTCACCGGCTGCCACAACCACGGGCCTGCCACGTGAGTCCCCCATTGCAGATTCC TTGTCTCTCGGGCGCGATGTCGTGTACTGACTGGGGCGTGTCAGGTATTGCATCGGCGCCAACGGCGACGACGTC GAGCTCGGCTCGGCCGAGGGAGAGGCGGCGCCGCCCGGAGGCCAGGCCCACGACCACGACCACGCGGCCGGAGAC GCGGCCGGCGGCGGCCACCGGCATTGCCACTTCCATGCCGGCGTCGAGTGAGTTCTCCCCACGGCGCTCCCGGGC CCCGGACCTTCGCGCCGGGGCCGGACCGGAGGGCAGAATTCGGCTGACGGCTTTGGCAATGGCGCGTGCAGGCAC TGCGTGGGAGGCGGCGAGAGCGAGTCCGGCCCGGCCCAGTGCGACGGCGTCAAGCGCGACTACAACGTGCCCCTA CGCGTCGGGCTTCTCTTCGCCATCATGGCCACCAGCGCCCTCGGTGCGTTTGCCCTCCCTGCCCCCCTTGCGCCT CTGCGGCCTGCCGTGTCCCGTCCTGTTGGCGGCCTCGGTCTCATGTGTGGCGCGAGGATGGCGGGATGGAAGAGG CTGACCGTCTTGCCAGGCGTCTTCGGCCCCATCCTGATCCAGAGCTACTTGCCGCGGAAGCTCGACCTCGTCTTC GTCATCCTCAAGCAGTTCGGCACCGGCATCATTATCTCCACCGCCTTCGTCCATGTACGTACGGCGCGCGTCTCC CCGCGGTCCGGGATTCGGGGTCAGCGACACAGAGAGACTGACTCGGTGACAGCTGTACACGCATGCCTCGCTCAT GTTCGCCAACAAGTGCATCGGCGAGCTCAAGTACGAGTCGACGACGTCTGCCATCGTCATGGCCGGCCTGTTCCT GTCCTTCGTCGTCGAGTACATCGGCCAGCGCATCGTCCAGGCCAAGTTCAAGTCGTCCGCGGCCGTCACGCCTGA GGAGCGAGCCAAGGCCTTTCTGTCGAGCGAGGTGGTCAACATCCTGGTCATGGAAGCCGGCATCCTCTTCCACTC GTTGCGTACGTCTCCCTCCCTCCCTCTCTGCACGTCATCACCACACCCTGCCCTCTTCTCCCGCCCCGCGAGCCT CGAGCTGACCGGGGACTCGTCTGCGCTGGACAATAGTCATCGGCCTCACCCTGGTCGTGGCCGGCGACTCCTTCT TCGTGACGCTGTTCGTCGTCATCCTCTTCCACCAAGTGTTCGAAGGCCTCGCGCTCGGCACCCGGATCGCCACCG TCGGCACCGTCAACCACGCCTCGGGCGGGGCGGGGGCGGCGTCGTCGGCGTCGGCGTCGTCGCTGACGGGCGGCG GCCACGGCGACGAGGCCGTCGGGCGCGAGGACGTGGATAAGTCGCACGGCCTCGCCACGGCGGGCGGCCCGTCGT CGGCGCTGGCGGGCAGGAGCCTCGGGCTGTCGATGAAGAAGAAGCTCGGACTGGCGGCGCTGTTCGCCTTCGTCA CGCCCATCGGCATGGCCATCGGCATTGGGGTGCTGCAGAAGTTCAACGGCAACGACAAGTCGACGCTCATCGCCA TCGGCACCCTCGACGCCCTCTCGGCCGGCATCCTCGTCTGGGTCGGCGTCGTCGAGATGTGGGCCGCCGACTGGA TGGGCGGCGGCGGCGGCGGCCACGGCCACAGCCACAAGGCCGAGCTGGCAGACGCCGGCCTGCTGACGACGGCCC TCGCCCTCTTCGGCCTCCTGGCCGGCATGGTCCTGATGAGCGTGCTGGGCAAGTGGGCCTAG |