Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|144
Gene name
LocationContig_1022:3473..4160
Strand-
Gene length (bp)687
Transcript length (bp)687
Coding sequence length (bp)687
Protein length (aa) 229

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus 0.5033 0.5387 0.2386 0.0989 0.2818 0.0909 0.2938 0.2288 0.2376 0.0294

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 141 163 22
2 178 200 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup8811
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|144 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|144
MYRPCACTSTGRAAACLLLATAGSRSSDLHTHQAEASRSTGRGPAKGKIKNKKTRAEVGCASLSASATGQSQRPA
PAIGPGALSALGCGCPLTASPISLDNPLQSAQRSQWPASLTAQRLPTCWVYYFPRLDARPCSDSVCLLRRLCLPS
AAGLFVLCLGLVPRRRPGRFFPRLFFPLSVLLLLLLILSFSSSASYAAAFESPSACLRRRPTPRRSLITGGRRRK
AGK*
Coding >Hirsu2|144
ATGTACCGTCCATGTGCATGTACCTCGACGGGACGCGCTGCGGCGTGCCTCCTACTGGCTACAGCGGGCTCCAGG
TCCAGCGACCTGCACACCCACCAGGCTGAGGCGTCCCGCTCCACCGGACGAGGCCCTGCAAAGGGAAAAATCAAA
AATAAGAAAACCCGCGCTGAGGTCGGGTGCGCGTCGCTGTCGGCCTCGGCTACCGGCCAATCGCAGCGCCCAGCC
CCGGCCATTGGGCCAGGCGCCCTCAGCGCCCTTGGCTGTGGCTGTCCTCTGACAGCCTCGCCAATTAGCCTCGAC
AACCCCCTCCAGTCCGCCCAGCGCAGCCAATGGCCGGCCAGCCTTACTGCCCAGAGGCTGCCTACCTGCTGGGTC
TATTATTTCCCTCGCCTGGACGCCCGTCCTTGTAGCGATAGCGTCTGCCTTCTCCGTCGCCTCTGCTTGCCCTCC
GCCGCCGGCCTCTTCGTCCTCTGCCTTGGTCTTGTCCCTCGTCGTCGTCCGGGCCGCTTCTTCCCCCGTCTCTTC
TTCCCCCTCTCCGTCCTCCTCCTCCTCCTCCTGATCCTCTCCTTCTCCTCGTCCGCCTCGTACGCCGCCGCCTTC
GAGTCTCCCTCAGCCTGCCTGCGCCGCCGACCGACTCCCCGTCGCTCTCTGATCACGGGCGGACGGAGGAGGAAA
GCCGGAAAATAA
Transcript >Hirsu2|144
ATGTACCGTCCATGTGCATGTACCTCGACGGGACGCGCTGCGGCGTGCCTCCTACTGGCTACAGCGGGCTCCAGG
TCCAGCGACCTGCACACCCACCAGGCTGAGGCGTCCCGCTCCACCGGACGAGGCCCTGCAAAGGGAAAAATCAAA
AATAAGAAAACCCGCGCTGAGGTCGGGTGCGCGTCGCTGTCGGCCTCGGCTACCGGCCAATCGCAGCGCCCAGCC
CCGGCCATTGGGCCAGGCGCCCTCAGCGCCCTTGGCTGTGGCTGTCCTCTGACAGCCTCGCCAATTAGCCTCGAC
AACCCCCTCCAGTCCGCCCAGCGCAGCCAATGGCCGGCCAGCCTTACTGCCCAGAGGCTGCCTACCTGCTGGGTC
TATTATTTCCCTCGCCTGGACGCCCGTCCTTGTAGCGATAGCGTCTGCCTTCTCCGTCGCCTCTGCTTGCCCTCC
GCCGCCGGCCTCTTCGTCCTCTGCCTTGGTCTTGTCCCTCGTCGTCGTCCGGGCCGCTTCTTCCCCCGTCTCTTC
TTCCCCCTCTCCGTCCTCCTCCTCCTCCTCCTGATCCTCTCCTTCTCCTCGTCCGCCTCGTACGCCGCCGCCTTC
GAGTCTCCCTCAGCCTGCCTGCGCCGCCGACCGACTCCCCGTCGCTCTCTGATCACGGGCGGACGGAGGAGGAAA
GCCGGAAAATAA
Gene >Hirsu2|144
ATGTACCGTCCATGTGCATGTACCTCGACGGGACGCGCTGCGGCGTGCCTCCTACTGGCTACAGCGGGCTCCAGG
TCCAGCGACCTGCACACCCACCAGGCTGAGGCGTCCCGCTCCACCGGACGAGGCCCTGCAAAGGGAAAAATCAAA
AATAAGAAAACCCGCGCTGAGGTCGGGTGCGCGTCGCTGTCGGCCTCGGCTACCGGCCAATCGCAGCGCCCAGCC
CCGGCCATTGGGCCAGGCGCCCTCAGCGCCCTTGGCTGTGGCTGTCCTCTGACAGCCTCGCCAATTAGCCTCGAC
AACCCCCTCCAGTCCGCCCAGCGCAGCCAATGGCCGGCCAGCCTTACTGCCCAGAGGCTGCCTACCTGCTGGGTC
TATTATTTCCCTCGCCTGGACGCCCGTCCTTGTAGCGATAGCGTCTGCCTTCTCCGTCGCCTCTGCTTGCCCTCC
GCCGCCGGCCTCTTCGTCCTCTGCCTTGGTCTTGTCCCTCGTCGTCGTCCGGGCCGCTTCTTCCCCCGTCTCTTC
TTCCCCCTCTCCGTCCTCCTCCTCCTCCTCCTGATCCTCTCCTTCTCCTCGTCCGCCTCGTACGCCGCCGCCTTC
GAGTCTCCCTCAGCCTGCCTGCGCCGCCGACCGACTCCCCGTCGCTCTCTGATCACGGGCGGACGGAGGAGGAAA
GCCGGAAAATAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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