© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|144 |
| Gene name | |
| Location | Contig_1022:3473..4160 |
| Strand | - |
| Gene length (bp) | 687 |
| Transcript length (bp) | 687 |
| Coding sequence length (bp) | 687 |
| Protein length (aa) | 229 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | 0.5033 | 0.5387 | 0.2386 | 0.0989 | 0.2818 | 0.0909 | 0.2938 | 0.2288 | 0.2376 | 0.0294 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 141 | 163 | 22 |
| 2 | 178 | 200 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 8811 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|144 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|144 MYRPCACTSTGRAAACLLLATAGSRSSDLHTHQAEASRSTGRGPAKGKIKNKKTRAEVGCASLSASATGQSQRPA PAIGPGALSALGCGCPLTASPISLDNPLQSAQRSQWPASLTAQRLPTCWVYYFPRLDARPCSDSVCLLRRLCLPS AAGLFVLCLGLVPRRRPGRFFPRLFFPLSVLLLLLLILSFSSSASYAAAFESPSACLRRRPTPRRSLITGGRRRK AGK* |
| Coding | >Hirsu2|144 ATGTACCGTCCATGTGCATGTACCTCGACGGGACGCGCTGCGGCGTGCCTCCTACTGGCTACAGCGGGCTCCAGG TCCAGCGACCTGCACACCCACCAGGCTGAGGCGTCCCGCTCCACCGGACGAGGCCCTGCAAAGGGAAAAATCAAA AATAAGAAAACCCGCGCTGAGGTCGGGTGCGCGTCGCTGTCGGCCTCGGCTACCGGCCAATCGCAGCGCCCAGCC CCGGCCATTGGGCCAGGCGCCCTCAGCGCCCTTGGCTGTGGCTGTCCTCTGACAGCCTCGCCAATTAGCCTCGAC AACCCCCTCCAGTCCGCCCAGCGCAGCCAATGGCCGGCCAGCCTTACTGCCCAGAGGCTGCCTACCTGCTGGGTC TATTATTTCCCTCGCCTGGACGCCCGTCCTTGTAGCGATAGCGTCTGCCTTCTCCGTCGCCTCTGCTTGCCCTCC GCCGCCGGCCTCTTCGTCCTCTGCCTTGGTCTTGTCCCTCGTCGTCGTCCGGGCCGCTTCTTCCCCCGTCTCTTC TTCCCCCTCTCCGTCCTCCTCCTCCTCCTCCTGATCCTCTCCTTCTCCTCGTCCGCCTCGTACGCCGCCGCCTTC GAGTCTCCCTCAGCCTGCCTGCGCCGCCGACCGACTCCCCGTCGCTCTCTGATCACGGGCGGACGGAGGAGGAAA GCCGGAAAATAA |
| Transcript | >Hirsu2|144 ATGTACCGTCCATGTGCATGTACCTCGACGGGACGCGCTGCGGCGTGCCTCCTACTGGCTACAGCGGGCTCCAGG TCCAGCGACCTGCACACCCACCAGGCTGAGGCGTCCCGCTCCACCGGACGAGGCCCTGCAAAGGGAAAAATCAAA AATAAGAAAACCCGCGCTGAGGTCGGGTGCGCGTCGCTGTCGGCCTCGGCTACCGGCCAATCGCAGCGCCCAGCC CCGGCCATTGGGCCAGGCGCCCTCAGCGCCCTTGGCTGTGGCTGTCCTCTGACAGCCTCGCCAATTAGCCTCGAC AACCCCCTCCAGTCCGCCCAGCGCAGCCAATGGCCGGCCAGCCTTACTGCCCAGAGGCTGCCTACCTGCTGGGTC TATTATTTCCCTCGCCTGGACGCCCGTCCTTGTAGCGATAGCGTCTGCCTTCTCCGTCGCCTCTGCTTGCCCTCC GCCGCCGGCCTCTTCGTCCTCTGCCTTGGTCTTGTCCCTCGTCGTCGTCCGGGCCGCTTCTTCCCCCGTCTCTTC TTCCCCCTCTCCGTCCTCCTCCTCCTCCTCCTGATCCTCTCCTTCTCCTCGTCCGCCTCGTACGCCGCCGCCTTC GAGTCTCCCTCAGCCTGCCTGCGCCGCCGACCGACTCCCCGTCGCTCTCTGATCACGGGCGGACGGAGGAGGAAA GCCGGAAAATAA |
| Gene | >Hirsu2|144 ATGTACCGTCCATGTGCATGTACCTCGACGGGACGCGCTGCGGCGTGCCTCCTACTGGCTACAGCGGGCTCCAGG TCCAGCGACCTGCACACCCACCAGGCTGAGGCGTCCCGCTCCACCGGACGAGGCCCTGCAAAGGGAAAAATCAAA AATAAGAAAACCCGCGCTGAGGTCGGGTGCGCGTCGCTGTCGGCCTCGGCTACCGGCCAATCGCAGCGCCCAGCC CCGGCCATTGGGCCAGGCGCCCTCAGCGCCCTTGGCTGTGGCTGTCCTCTGACAGCCTCGCCAATTAGCCTCGAC AACCCCCTCCAGTCCGCCCAGCGCAGCCAATGGCCGGCCAGCCTTACTGCCCAGAGGCTGCCTACCTGCTGGGTC TATTATTTCCCTCGCCTGGACGCCCGTCCTTGTAGCGATAGCGTCTGCCTTCTCCGTCGCCTCTGCTTGCCCTCC GCCGCCGGCCTCTTCGTCCTCTGCCTTGGTCTTGTCCCTCGTCGTCGTCCGGGCCGCTTCTTCCCCCGTCTCTTC TTCCCCCTCTCCGTCCTCCTCCTCCTCCTCCTGATCCTCTCCTTCTCCTCGTCCGCCTCGTACGCCGCCGCCTTC GAGTCTCCCTCAGCCTGCCTGCGCCGCCGACCGACTCCCCGTCGCTCTCTGATCACGGGCGGACGGAGGAGGAAA GCCGGAAAATAA |