Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|139
Gene name
Location	Contig_1021:62..911
Strand	+
Gene length (bp)	849
Transcript length (bp)	849
Coding sequence length (bp)	849
Protein length (aa)	283

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01545	Cation_efflux	Cation efflux family	3.7E-20	3	184

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q6Z7K5\|MTP3_ORYSJ	Metal tolerance protein 3 OS=Oryza sativa subsp. japonica GN=MTP3 PE=2 SV=1	1	274	8.0E-40
sp\|Q9SAJ7\|MTP9_ARATH	Metal tolerance protein 9 OS=Arabidopsis thaliana GN=MTP9 PE=2 SV=2	1	266	1.0E-37
sp\|Q9LDU0\|MTP7_ORYSJ	Metal tolerance protein 7 OS=Oryza sativa subsp. japonica GN=MTP7 PE=2 SV=1	3	278	8.0E-37
sp\|Q10PP8\|MTP4_ORYSJ	Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1	1	275	1.0E-36
sp\|Q0WU02\|MTP10_ARATH	Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1	1	266	1.0E-36

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q6Z7K5\|MTP3_ORYSJ	Metal tolerance protein 3 OS=Oryza sativa subsp. japonica GN=MTP3 PE=2 SV=1	1	274	8.0E-40
sp\|Q9SAJ7\|MTP9_ARATH	Metal tolerance protein 9 OS=Arabidopsis thaliana GN=MTP9 PE=2 SV=2	1	266	1.0E-37
sp\|Q9LDU0\|MTP7_ORYSJ	Metal tolerance protein 7 OS=Oryza sativa subsp. japonica GN=MTP7 PE=2 SV=1	3	278	8.0E-37
sp\|Q10PP8\|MTP4_ORYSJ	Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1	1	275	1.0E-36
sp\|Q0WU02\|MTP10_ARATH	Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1	1	266	1.0E-36
sp\|Q5NA18\|MTP5_ORYSJ	Metal tolerance protein 5 OS=Oryza sativa subsp. japonica GN=MTP5 PE=2 SV=1	1	266	2.0E-35
sp\|Q9M2P2\|MTPC3_ARATH	Putative metal tolerance protein C3 OS=Arabidopsis thaliana GN=MTPC3 PE=3 SV=2	1	275	7.0E-34
sp\|O80632\|MTP11_ARATH	Metal tolerance protein 11 OS=Arabidopsis thaliana GN=MTP11 PE=2 SV=1	1	274	4.0E-29
sp\|Q0DHJ5\|MTP6_ORYSJ	Metal tolerance protein 6 OS=Oryza sativa subsp. japonica GN=MTP6 PE=2 SV=2	1	277	5.0E-21

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GO

GO Term	Description	Terminal node
GO:0016021	integral component of membrane	Yes
GO:0006812	cation transport	Yes
GO:0008324	cation transmembrane transporter activity	Yes
GO:0055085	transmembrane transport	Yes
GO:0022857	transmembrane transporter activity	No
GO:0009987	cellular process	No
GO:0110165	cellular anatomical entity	No
GO:0015075	ion transmembrane transporter activity	No
GO:0051179	localization	No
GO:0005215	transporter activity	No
GO:0006811	ion transport	No
GO:0005575	cellular_component	No
GO:0008150	biological_process	No
GO:0051234	establishment of localization	No
GO:0003674	molecular_function	No
GO:0006810	transport	No
GO:0031224	intrinsic component of membrane	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 16	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	20	42	22
2	62	79	17
3	94	116	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|139 LAGKGVAAFTTGSLSLVASLVDSALDLLCTLIVWTTTRLVLWRLGALRKRFPVGRRRLEPLGILVFSVIMIISFL QILQESVSRLMPGHGQAEPLSLGAVLALAATIVVKGAIGLACRPVRTAQVQALVQDCKTDVIFNSLSLLFPLVGY RADVWWLDPAGAGLLSLFIVYDWGRTSFENVVRLSGEAADERTVRKLTYMAYRFSPVVEGFKSITAYHAGDGVWA EFDILLDENTRLNRSHDIAETLQYCAEGLAGIDRAFVTTDYAAVGPTGHTHDVDWNH*
Coding	>Hirsu2\|139 CTGGCCGGCAAGGGCGTCGCGGCCTTCACGACGGGGTCGCTGTCGCTCGTCGCCTCGCTCGTCGACTCGGCCCTG GACCTGCTCTGCACGCTCATCGTGTGGACGACGACGCGGCTCGTGCTGTGGCGGCTGGGCGCGCTGCGCAAGCGC TTTCCCGTCGGCCGGCGCCGGCTCGAGCCGCTCGGCATCCTCGTCTTCTCCGTCATCATGATCATCTCCTTCCTG CAGATCCTGCAGGAGTCCGTCTCGCGCCTGATGCCGGGCCACGGCCAGGCCGAGCCGCTCAGCCTGGGCGCCGTC CTGGCCCTGGCGGCCACCATCGTCGTCAAGGGCGCCATCGGCCTCGCGTGCCGGCCCGTCCGCACGGCCCAGGTG CAGGCGCTGGTGCAGGACTGCAAGACGGACGTCATCTTCAACTCGCTCTCGCTGCTGTTCCCCCTCGTCGGCTAC CGCGCCGACGTCTGGTGGCTGGACCCGGCCGGCGCCGGTCTGCTCTCGCTCTTCATCGTCTACGACTGGGGCCGC ACCTCGTTCGAGAACGTGGTCCGGCTGTCGGGCGAGGCGGCCGACGAGAGGACGGTGCGGAAGCTGACGTACATG GCCTACCGCTTCTCGCCCGTCGTCGAGGGCTTCAAGTCCATCACCGCCTACCACGCCGGCGACGGCGTCTGGGCC GAGTTCGACATCCTGCTCGACGAGAACACGAGGCTGAACCGGTCCCACGACATCGCCGAGACGCTGCAGTACTGC GCCGAGGGCCTGGCCGGCATCGACCGCGCCTTCGTCACGACTGACTACGCCGCCGTCGGCCCGACCGGCCACACC CACGATGTCGACTGGAATCACTGA
Transcript	>Hirsu2\|139 CTGGCCGGCAAGGGCGTCGCGGCCTTCACGACGGGGTCGCTGTCGCTCGTCGCCTCGCTCGTCGACTCGGCCCTG GACCTGCTCTGCACGCTCATCGTGTGGACGACGACGCGGCTCGTGCTGTGGCGGCTGGGCGCGCTGCGCAAGCGC TTTCCCGTCGGCCGGCGCCGGCTCGAGCCGCTCGGCATCCTCGTCTTCTCCGTCATCATGATCATCTCCTTCCTG CAGATCCTGCAGGAGTCCGTCTCGCGCCTGATGCCGGGCCACGGCCAGGCCGAGCCGCTCAGCCTGGGCGCCGTC CTGGCCCTGGCGGCCACCATCGTCGTCAAGGGCGCCATCGGCCTCGCGTGCCGGCCCGTCCGCACGGCCCAGGTG CAGGCGCTGGTGCAGGACTGCAAGACGGACGTCATCTTCAACTCGCTCTCGCTGCTGTTCCCCCTCGTCGGCTAC CGCGCCGACGTCTGGTGGCTGGACCCGGCCGGCGCCGGTCTGCTCTCGCTCTTCATCGTCTACGACTGGGGCCGC ACCTCGTTCGAGAACGTGGTCCGGCTGTCGGGCGAGGCGGCCGACGAGAGGACGGTGCGGAAGCTGACGTACATG GCCTACCGCTTCTCGCCCGTCGTCGAGGGCTTCAAGTCCATCACCGCCTACCACGCCGGCGACGGCGTCTGGGCC GAGTTCGACATCCTGCTCGACGAGAACACGAGGCTGAACCGGTCCCACGACATCGCCGAGACGCTGCAGTACTGC GCCGAGGGCCTGGCCGGCATCGACCGCGCCTTCGTCACGACTGACTACGCCGCCGTCGGCCCGACCGGCCACACC CACGATGTCGACTGGAATCACTGA
Gene	>Hirsu2\|139 CTGGCCGGCAAGGGCGTCGCGGCCTTCACGACGGGGTCGCTGTCGCTCGTCGCCTCGCTCGTCGACTCGGCCCTG GACCTGCTCTGCACGCTCATCGTGTGGACGACGACGCGGCTCGTGCTGTGGCGGCTGGGCGCGCTGCGCAAGCGC TTTCCCGTCGGCCGGCGCCGGCTCGAGCCGCTCGGCATCCTCGTCTTCTCCGTCATCATGATCATCTCCTTCCTG CAGATCCTGCAGGAGTCCGTCTCGCGCCTGATGCCGGGCCACGGCCAGGCCGAGCCGCTCAGCCTGGGCGCCGTC CTGGCCCTGGCGGCCACCATCGTCGTCAAGGGCGCCATCGGCCTCGCGTGCCGGCCCGTCCGCACGGCCCAGGTG CAGGCGCTGGTGCAGGACTGCAAGACGGACGTCATCTTCAACTCGCTCTCGCTGCTGTTCCCCCTCGTCGGCTAC CGCGCCGACGTCTGGTGGCTGGACCCGGCCGGCGCCGGTCTGCTCTCGCTCTTCATCGTCTACGACTGGGGCCGC ACCTCGTTCGAGAACGTGGTCCGGCTGTCGGGCGAGGCGGCCGACGAGAGGACGGTGCGGAAGCTGACGTACATG GCCTACCGCTTCTCGCCCGTCGTCGAGGGCTTCAAGTCCATCACCGCCTACCACGCCGGCGACGGCGTCTGGGCC GAGTTCGACATCCTGCTCGACGAGAACACGAGGCTGAACCGGTCCCACGACATCGCCGAGACGCTGCAGTACTGC GCCGAGGGCCTGGCCGGCATCGACCGCGCCTTCGTCACGACTGACTACGCCGCCGTCGGCCCGACCGGCCACACC CACGATGTCGACTGGAATCACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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