© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|139 |
| Gene name | |
| Location | Contig_1021:62..911 |
| Strand | + |
| Gene length (bp) | 849 |
| Transcript length (bp) | 849 |
| Coding sequence length (bp) | 849 |
| Protein length (aa) | 283 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01545 | Cation_efflux | Cation efflux family | 3.7E-20 | 3 | 184 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6Z7K5|MTP3_ORYSJ | Metal tolerance protein 3 OS=Oryza sativa subsp. japonica GN=MTP3 PE=2 SV=1 | 1 | 274 | 8.0E-40 |
| sp|Q9SAJ7|MTP9_ARATH | Metal tolerance protein 9 OS=Arabidopsis thaliana GN=MTP9 PE=2 SV=2 | 1 | 266 | 1.0E-37 |
| sp|Q9LDU0|MTP7_ORYSJ | Metal tolerance protein 7 OS=Oryza sativa subsp. japonica GN=MTP7 PE=2 SV=1 | 3 | 278 | 8.0E-37 |
| sp|Q10PP8|MTP4_ORYSJ | Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1 | 1 | 275 | 1.0E-36 |
| sp|Q0WU02|MTP10_ARATH | Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1 | 1 | 266 | 1.0E-36 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6Z7K5|MTP3_ORYSJ | Metal tolerance protein 3 OS=Oryza sativa subsp. japonica GN=MTP3 PE=2 SV=1 | 1 | 274 | 8.0E-40 |
| sp|Q9SAJ7|MTP9_ARATH | Metal tolerance protein 9 OS=Arabidopsis thaliana GN=MTP9 PE=2 SV=2 | 1 | 266 | 1.0E-37 |
| sp|Q9LDU0|MTP7_ORYSJ | Metal tolerance protein 7 OS=Oryza sativa subsp. japonica GN=MTP7 PE=2 SV=1 | 3 | 278 | 8.0E-37 |
| sp|Q10PP8|MTP4_ORYSJ | Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1 | 1 | 275 | 1.0E-36 |
| sp|Q0WU02|MTP10_ARATH | Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1 | 1 | 266 | 1.0E-36 |
| sp|Q5NA18|MTP5_ORYSJ | Metal tolerance protein 5 OS=Oryza sativa subsp. japonica GN=MTP5 PE=2 SV=1 | 1 | 266 | 2.0E-35 |
| sp|Q9M2P2|MTPC3_ARATH | Putative metal tolerance protein C3 OS=Arabidopsis thaliana GN=MTPC3 PE=3 SV=2 | 1 | 275 | 7.0E-34 |
| sp|O80632|MTP11_ARATH | Metal tolerance protein 11 OS=Arabidopsis thaliana GN=MTP11 PE=2 SV=1 | 1 | 274 | 4.0E-29 |
| sp|Q0DHJ5|MTP6_ORYSJ | Metal tolerance protein 6 OS=Oryza sativa subsp. japonica GN=MTP6 PE=2 SV=2 | 1 | 277 | 5.0E-21 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0008324 | cation transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| GO:0031224 | intrinsic component of membrane | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Peroxisome | Signal peptide|Transmembrane domain | 0.1085 | 0.1463 | 0.3002 | 0.0953 | 0.191 | 0.0314 | 0.5427 | 0.5361 | 0.2247 | 0.57 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 62 | 79 | 17 |
| 3 | 94 | 116 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4904 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|139 LAGKGVAAFTTGSLSLVASLVDSALDLLCTLIVWTTTRLVLWRLGALRKRFPVGRRRLEPLGILVFSVIMIISFL QILQESVSRLMPGHGQAEPLSLGAVLALAATIVVKGAIGLACRPVRTAQVQALVQDCKTDVIFNSLSLLFPLVGY RADVWWLDPAGAGLLSLFIVYDWGRTSFENVVRLSGEAADERTVRKLTYMAYRFSPVVEGFKSITAYHAGDGVWA EFDILLDENTRLNRSHDIAETLQYCAEGLAGIDRAFVTTDYAAVGPTGHTHDVDWNH* |
| Coding | >Hirsu2|139 CTGGCCGGCAAGGGCGTCGCGGCCTTCACGACGGGGTCGCTGTCGCTCGTCGCCTCGCTCGTCGACTCGGCCCTG GACCTGCTCTGCACGCTCATCGTGTGGACGACGACGCGGCTCGTGCTGTGGCGGCTGGGCGCGCTGCGCAAGCGC TTTCCCGTCGGCCGGCGCCGGCTCGAGCCGCTCGGCATCCTCGTCTTCTCCGTCATCATGATCATCTCCTTCCTG CAGATCCTGCAGGAGTCCGTCTCGCGCCTGATGCCGGGCCACGGCCAGGCCGAGCCGCTCAGCCTGGGCGCCGTC CTGGCCCTGGCGGCCACCATCGTCGTCAAGGGCGCCATCGGCCTCGCGTGCCGGCCCGTCCGCACGGCCCAGGTG CAGGCGCTGGTGCAGGACTGCAAGACGGACGTCATCTTCAACTCGCTCTCGCTGCTGTTCCCCCTCGTCGGCTAC CGCGCCGACGTCTGGTGGCTGGACCCGGCCGGCGCCGGTCTGCTCTCGCTCTTCATCGTCTACGACTGGGGCCGC ACCTCGTTCGAGAACGTGGTCCGGCTGTCGGGCGAGGCGGCCGACGAGAGGACGGTGCGGAAGCTGACGTACATG GCCTACCGCTTCTCGCCCGTCGTCGAGGGCTTCAAGTCCATCACCGCCTACCACGCCGGCGACGGCGTCTGGGCC GAGTTCGACATCCTGCTCGACGAGAACACGAGGCTGAACCGGTCCCACGACATCGCCGAGACGCTGCAGTACTGC GCCGAGGGCCTGGCCGGCATCGACCGCGCCTTCGTCACGACTGACTACGCCGCCGTCGGCCCGACCGGCCACACC CACGATGTCGACTGGAATCACTGA |
| Transcript | >Hirsu2|139 CTGGCCGGCAAGGGCGTCGCGGCCTTCACGACGGGGTCGCTGTCGCTCGTCGCCTCGCTCGTCGACTCGGCCCTG GACCTGCTCTGCACGCTCATCGTGTGGACGACGACGCGGCTCGTGCTGTGGCGGCTGGGCGCGCTGCGCAAGCGC TTTCCCGTCGGCCGGCGCCGGCTCGAGCCGCTCGGCATCCTCGTCTTCTCCGTCATCATGATCATCTCCTTCCTG CAGATCCTGCAGGAGTCCGTCTCGCGCCTGATGCCGGGCCACGGCCAGGCCGAGCCGCTCAGCCTGGGCGCCGTC CTGGCCCTGGCGGCCACCATCGTCGTCAAGGGCGCCATCGGCCTCGCGTGCCGGCCCGTCCGCACGGCCCAGGTG CAGGCGCTGGTGCAGGACTGCAAGACGGACGTCATCTTCAACTCGCTCTCGCTGCTGTTCCCCCTCGTCGGCTAC CGCGCCGACGTCTGGTGGCTGGACCCGGCCGGCGCCGGTCTGCTCTCGCTCTTCATCGTCTACGACTGGGGCCGC ACCTCGTTCGAGAACGTGGTCCGGCTGTCGGGCGAGGCGGCCGACGAGAGGACGGTGCGGAAGCTGACGTACATG GCCTACCGCTTCTCGCCCGTCGTCGAGGGCTTCAAGTCCATCACCGCCTACCACGCCGGCGACGGCGTCTGGGCC GAGTTCGACATCCTGCTCGACGAGAACACGAGGCTGAACCGGTCCCACGACATCGCCGAGACGCTGCAGTACTGC GCCGAGGGCCTGGCCGGCATCGACCGCGCCTTCGTCACGACTGACTACGCCGCCGTCGGCCCGACCGGCCACACC CACGATGTCGACTGGAATCACTGA |
| Gene | >Hirsu2|139 CTGGCCGGCAAGGGCGTCGCGGCCTTCACGACGGGGTCGCTGTCGCTCGTCGCCTCGCTCGTCGACTCGGCCCTG GACCTGCTCTGCACGCTCATCGTGTGGACGACGACGCGGCTCGTGCTGTGGCGGCTGGGCGCGCTGCGCAAGCGC TTTCCCGTCGGCCGGCGCCGGCTCGAGCCGCTCGGCATCCTCGTCTTCTCCGTCATCATGATCATCTCCTTCCTG CAGATCCTGCAGGAGTCCGTCTCGCGCCTGATGCCGGGCCACGGCCAGGCCGAGCCGCTCAGCCTGGGCGCCGTC CTGGCCCTGGCGGCCACCATCGTCGTCAAGGGCGCCATCGGCCTCGCGTGCCGGCCCGTCCGCACGGCCCAGGTG CAGGCGCTGGTGCAGGACTGCAAGACGGACGTCATCTTCAACTCGCTCTCGCTGCTGTTCCCCCTCGTCGGCTAC CGCGCCGACGTCTGGTGGCTGGACCCGGCCGGCGCCGGTCTGCTCTCGCTCTTCATCGTCTACGACTGGGGCCGC ACCTCGTTCGAGAACGTGGTCCGGCTGTCGGGCGAGGCGGCCGACGAGAGGACGGTGCGGAAGCTGACGTACATG GCCTACCGCTTCTCGCCCGTCGTCGAGGGCTTCAAGTCCATCACCGCCTACCACGCCGGCGACGGCGTCTGGGCC GAGTTCGACATCCTGCTCGACGAGAACACGAGGCTGAACCGGTCCCACGACATCGCCGAGACGCTGCAGTACTGC GCCGAGGGCCTGGCCGGCATCGACCGCGCCTTCGTCACGACTGACTACGCCGCCGTCGGCCCGACCGGCCACACC CACGATGTCGACTGGAATCACTGA |