Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1379
Gene name
LocationContig_130:1749..1995
Strand-
Gene length (bp)246
Transcript length (bp)246
Coding sequence length (bp)246
Protein length (aa) 82

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.1948 0.1568 0.8737 0.1375 0.1863 0.019 0.2873 0.1698 0.3246 0.0154

SignalP

SignalP signal predicted Location Score
Yes 1 - 25 0.999311

Transmembrane Domains

Domain # Start End Length
1 10 32 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup8790
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|1379 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1379
MPAANDGQRHFLAALLLILGLHVLSCAAVRAADGASPEQTCATYYRLDDVTEWNDEIRRCLIASEAANFRLRRRP
VVDNAL*
Coding >Hirsu2|1379
ATGCCAGCTGCCAACGACGGCCAGAGGCACTTTCTGGCCGCCCTGCTGCTCATCCTCGGCCTACATGTGCTGTCG
TGCGCAGCAGTCCGGGCCGCCGACGGGGCGAGCCCCGAGCAGACGTGCGCGACATACTACCGGCTCGACGACGTG
ACGGAATGGAACGACGAGATCAGGCGGTGTCTGATAGCCTCGGAGGCTGCGAATTTCCGCTTGCGACGGAGGCCG
GTTGTCGACAACGCACTCTAG
Transcript >Hirsu2|1379
ATGCCAGCTGCCAACGACGGCCAGAGGCACTTTCTGGCCGCCCTGCTGCTCATCCTCGGCCTACATGTGCTGTCG
TGCGCAGCAGTCCGGGCCGCCGACGGGGCGAGCCCCGAGCAGACGTGCGCGACATACTACCGGCTCGACGACGTG
ACGGAATGGAACGACGAGATCAGGCGGTGTCTGATAGCCTCGGAGGCTGCGAATTTCCGCTTGCGACGGAGGCCG
GTTGTCGACAACGCACTCTAG
Gene >Hirsu2|1379
ATGCCAGCTGCCAACGACGGCCAGAGGCACTTTCTGGCCGCCCTGCTGCTCATCCTCGGCCTACATGTGCTGTCG
TGCGCAGCAGTCCGGGCCGCCGACGGGGCGAGCCCCGAGCAGACGTGCGCGACATACTACCGGCTCGACGACGTG
ACGGAATGGAACGACGAGATCAGGCGGTGTCTGATAGCCTCGGAGGCTGCGAATTTCCGCTTGCGACGGAGGCCG
GTTGTCGACAACGCACTCTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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