Protein ID | Hirsu2|1379 |
Gene name | |
Location | Contig_130:1749..1995 |
Strand | - |
Gene length (bp) | 246 |
Transcript length (bp) | 246 |
Coding sequence length (bp) | 246 |
Protein length (aa) | 82 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1948 | 0.1568 | 0.8737 | 0.1375 | 0.1863 | 0.019 | 0.2873 | 0.1698 | 0.3246 | 0.0154 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 25 | 0.999311 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 10 | 32 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 8790 |
Change Orthofinder run |
Species | Protein ID |
---|---|
Ophiocordyceps subramaniannii | Hirsu2|1379 (this protein) |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1379 MPAANDGQRHFLAALLLILGLHVLSCAAVRAADGASPEQTCATYYRLDDVTEWNDEIRRCLIASEAANFRLRRRP VVDNAL* |
Coding | >Hirsu2|1379 ATGCCAGCTGCCAACGACGGCCAGAGGCACTTTCTGGCCGCCCTGCTGCTCATCCTCGGCCTACATGTGCTGTCG TGCGCAGCAGTCCGGGCCGCCGACGGGGCGAGCCCCGAGCAGACGTGCGCGACATACTACCGGCTCGACGACGTG ACGGAATGGAACGACGAGATCAGGCGGTGTCTGATAGCCTCGGAGGCTGCGAATTTCCGCTTGCGACGGAGGCCG GTTGTCGACAACGCACTCTAG |
Transcript | >Hirsu2|1379 ATGCCAGCTGCCAACGACGGCCAGAGGCACTTTCTGGCCGCCCTGCTGCTCATCCTCGGCCTACATGTGCTGTCG TGCGCAGCAGTCCGGGCCGCCGACGGGGCGAGCCCCGAGCAGACGTGCGCGACATACTACCGGCTCGACGACGTG ACGGAATGGAACGACGAGATCAGGCGGTGTCTGATAGCCTCGGAGGCTGCGAATTTCCGCTTGCGACGGAGGCCG GTTGTCGACAACGCACTCTAG |
Gene | >Hirsu2|1379 ATGCCAGCTGCCAACGACGGCCAGAGGCACTTTCTGGCCGCCCTGCTGCTCATCCTCGGCCTACATGTGCTGTCG TGCGCAGCAGTCCGGGCCGCCGACGGGGCGAGCCCCGAGCAGACGTGCGCGACATACTACCGGCTCGACGACGTG ACGGAATGGAACGACGAGATCAGGCGGTGTCTGATAGCCTCGGAGGCTGCGAATTTCCGCTTGCGACGGAGGCCG GTTGTCGACAACGCACTCTAG |