© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|1350 |
| Gene name | |
| Location | Contig_1296:6440..7064 |
| Strand | - |
| Gene length (bp) | 624 |
| Transcript length (bp) | 624 |
| Coding sequence length (bp) | 624 |
| Protein length (aa) | 208 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05875 | Ceramidase | Ceramidase | 9.6E-39 | 13 | 205 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9D099|ACER3_MOUSE | Alkaline ceramidase 3 OS=Mus musculus GN=Acer3 PE=2 SV=1 | 7 | 186 | 1.0E-13 |
| sp|Q9NUN7|ACER3_HUMAN | Alkaline ceramidase 3 OS=Homo sapiens GN=ACER3 PE=1 SV=3 | 1 | 186 | 6.0E-13 |
| sp|P38298|YPC1_YEAST | Alkaline ceramidase YPC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPC1 PE=1 SV=1 | 7 | 185 | 3.0E-12 |
| sp|Q02896|YDC1_YEAST | Alkaline ceramidase YDC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDC1 PE=1 SV=1 | 7 | 197 | 1.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | Yes |
| GO:0006672 | ceramide metabolic process | Yes |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0008150 | biological_process | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006643 | membrane lipid metabolic process | No |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | No |
| GO:0009987 | cellular process | No |
| GO:0008152 | metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0006665 | sphingolipid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0044237 | cellular metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 9 | 31 | 22 |
| 2 | 68 | 87 | 19 |
| 3 | 92 | 114 | 22 |
| 4 | 129 | 151 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1350 MYGRDSRGLLAPRLDFMSISLLCLGIGSFLFHASLRATFEFADEFSMLGLTWSMLQSTLTVRQPHWKAHSISVCL AICFTSFSALYLQSPDIIYQVIAFATGLFVVILRSQYLFHWLQPAYPKAKSRDWNVRTWKAIALCLVGYALWNID LQYCAELRQIRHRVGLPCAWLFELHGWWHVLTAIGASQFMDVAREVRQHSKQEQMNE* |
| Coding | >Hirsu2|1350 ATGTACGGCCGTGATAGCCGCGGGCTGCTTGCGCCAAGGTTGGACTTTATGTCTATCTCGCTTCTCTGCCTCGGC ATCGGCTCCTTCCTCTTCCACGCCAGTCTCCGCGCGACATTCGAATTCGCCGACGAGTTCTCCATGCTCGGCCTG ACGTGGTCGATGCTCCAGTCTACCCTCACAGTACGACAACCACATTGGAAGGCTCACTCGATCTCGGTCTGCTTG GCTATTTGCTTCACCTCATTTTCTGCGCTGTATCTGCAGTCGCCAGACATCATTTACCAAGTCATTGCCTTCGCA ACAGGCCTATTTGTGGTAATTCTACGCAGCCAGTACCTATTCCACTGGCTTCAGCCAGCATATCCAAAAGCCAAG AGCCGGGACTGGAACGTGCGGACGTGGAAAGCAATTGCCCTATGTCTCGTTGGGTACGCGCTCTGGAACATTGAT CTCCAGTACTGCGCGGAGCTCAGGCAGATCAGACACCGCGTCGGGCTCCCCTGTGCTTGGCTGTTTGAGTTACAT GGATGGTGGCATGTCTTGACGGCCATTGGCGCCAGCCAGTTCATGGACGTGGCCCGAGAAGTGCGCCAACACTCG AAGCAAGAGCAGATGAACGAATAA |
| Transcript | >Hirsu2|1350 ATGTACGGCCGTGATAGCCGCGGGCTGCTTGCGCCAAGGTTGGACTTTATGTCTATCTCGCTTCTCTGCCTCGGC ATCGGCTCCTTCCTCTTCCACGCCAGTCTCCGCGCGACATTCGAATTCGCCGACGAGTTCTCCATGCTCGGCCTG ACGTGGTCGATGCTCCAGTCTACCCTCACAGTACGACAACCACATTGGAAGGCTCACTCGATCTCGGTCTGCTTG GCTATTTGCTTCACCTCATTTTCTGCGCTGTATCTGCAGTCGCCAGACATCATTTACCAAGTCATTGCCTTCGCA ACAGGCCTATTTGTGGTAATTCTACGCAGCCAGTACCTATTCCACTGGCTTCAGCCAGCATATCCAAAAGCCAAG AGCCGGGACTGGAACGTGCGGACGTGGAAAGCAATTGCCCTATGTCTCGTTGGGTACGCGCTCTGGAACATTGAT CTCCAGTACTGCGCGGAGCTCAGGCAGATCAGACACCGCGTCGGGCTCCCCTGTGCTTGGCTGTTTGAGTTACAT GGATGGTGGCATGTCTTGACGGCCATTGGCGCCAGCCAGTTCATGGACGTGGCCCGAGAAGTGCGCCAACACTCG AAGCAAGAGCAGATGAACGAATAA |
| Gene | >Hirsu2|1350 ATGTACGGCCGTGATAGCCGCGGGCTGCTTGCGCCAAGGTTGGACTTTATGTCTATCTCGCTTCTCTGCCTCGGC ATCGGCTCCTTCCTCTTCCACGCCAGTCTCCGCGCGACATTCGAATTCGCCGACGAGTTCTCCATGCTCGGCCTG ACGTGGTCGATGCTCCAGTCTACCCTCACAGTACGACAACCACATTGGAAGGCTCACTCGATCTCGGTCTGCTTG GCTATTTGCTTCACCTCATTTTCTGCGCTGTATCTGCAGTCGCCAGACATCATTTACCAAGTCATTGCCTTCGCA ACAGGCCTATTTGTGGTAATTCTACGCAGCCAGTACCTATTCCACTGGCTTCAGCCAGCATATCCAAAAGCCAAG AGCCGGGACTGGAACGTGCGGACGTGGAAAGCAATTGCCCTATGTCTCGTTGGGTACGCGCTCTGGAACATTGAT CTCCAGTACTGCGCGGAGCTCAGGCAGATCAGACACCGCGTCGGGCTCCCCTGTGCTTGGCTGTTTGAGTTACAT GGATGGTGGCATGTCTTGACGGCCATTGGCGCCAGCCAGTTCATGGACGTGGCCCGAGAAGTGCGCCAACACTCG AAGCAAGAGCAGATGAACGAATAA |