Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1294
Gene name
LocationContig_1282:2610..3270
Strand-
Gene length (bp)660
Transcript length (bp)660
Coding sequence length (bp)660
Protein length (aa) 220

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-12 2 68

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74978|YQL5_SCHPO Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.05c PE=3 SV=1 1 151 3.0E-43
sp|Q6GL69|MK67I_XENTR MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis GN=nifk PE=2 SV=1 1 137 8.0E-28
sp|Q8JIY8|MK67I_DANRE MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio GN=nifk PE=2 SV=2 1 168 3.0E-26
sp|Q7SYS2|MK67I_XENLA MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis GN=nifk PE=2 SV=2 1 92 2.0E-24
sp|Q3SZM1|MK67I_BOVIN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus GN=NIFK PE=2 SV=1 1 92 2.0E-24
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Swissprot ID Swissprot Description Start End E-value
sp|O74978|YQL5_SCHPO Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.05c PE=3 SV=1 1 151 3.0E-43
sp|Q6GL69|MK67I_XENTR MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis GN=nifk PE=2 SV=1 1 137 8.0E-28
sp|Q8JIY8|MK67I_DANRE MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio GN=nifk PE=2 SV=2 1 168 3.0E-26
sp|Q7SYS2|MK67I_XENLA MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis GN=nifk PE=2 SV=2 1 92 2.0E-24
sp|Q3SZM1|MK67I_BOVIN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus GN=NIFK PE=2 SV=1 1 92 2.0E-24
sp|P53927|NOP15_YEAST Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP15 PE=1 SV=1 1 84 4.0E-23
sp|Q91VE6|MK67I_MOUSE MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Mus musculus GN=Nifk PE=1 SV=1 1 92 8.0E-23
sp|Q5RJM0|MK67I_RAT MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Rattus norvegicus GN=Nifk PE=2 SV=1 1 90 2.0E-22
sp|Q9BYG3|MK67I_HUMAN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Homo sapiens GN=NIFK PE=1 SV=1 4 92 1.0E-21
sp|A7EWN6|EIF3G_SCLS1 Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35 PE=3 SV=1 10 76 8.0E-07
sp|A6SGN8|EIF3G_BOTFB Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1 10 76 9.0E-07
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.3809 0.6885 0.0211 0.028 0.0594 0.0096 0.1751 0.0072 0.0302 0.0009

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup4897
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2185
Ophiocordyceps australis map64 (Brazil) OphauB2|6278
Ophiocordyceps camponoti-floridani Ophcf2|04345
Ophiocordyceps kimflemingae Ophio5|6314
Ophiocordyceps subramaniannii Hirsu2|1294 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1294
MGRIPHGFYEYEMRQYLSQFGPVSRLRLSRNRKTGASKHFAFVEFESESTAEIVAKTMDNYLLFGHILKVKMVPK
SQVHEELFKGANKRFKKVPWNKMAGLKLAKPKTETAWEAKVERERANRAQRADKLKAMGYDFEAPDLKEVPAAFP
AGGEDVNVQAVEAAPAVSEEATKMEEVREQEEVPAEATAAEAEAAQAPVPKKTSKAKAQKSGKKNKPKA*
Coding >Hirsu2|1294
ATGGGCCGCATTCCGCACGGATTCTACGAGTACGAAATGAGGCAGTACCTATCGCAATTCGGGCCCGTCAGCCGC
CTCCGTCTTTCGCGAAACAGGAAGACGGGAGCCAGCAAGCACTTTGCCTTTGTCGAGTTCGAGAGCGAGAGCACG
GCCGAGATCGTCGCCAAAACCATGGACAACTATCTGCTGTTCGGACACATCCTCAAGGTGAAGATGGTGCCCAAG
AGCCAGGTCCACGAGGAACTGTTCAAGGGCGCCAACAAGAGGTTCAAGAAGGTGCCGTGGAACAAGATGGCAGGG
CTGAAGCTGGCCAAGCCGAAGACCGAGACTGCTTGGGAGGCAAAAGTGGAAAGGGAGCGAGCCAATCGGGCCCAG
AGAGCCGACAAGCTCAAGGCCATGGGCTACGACTTCGAGGCACCGGACTTGAAGGAGGTCCCGGCAGCTTTTCCC
GCAGGCGGCGAAGATGTCAATGTCCAGGCGGTCGAGGCCGCTCCTGCGGTGTCTGAGGAGGCGACGAAAATGGAG
GAGGTGCGCGAGCAAGAGGAGGTGCCGGCGGAGGCAACGGCGGCTGAGGCCGAGGCTGCACAGGCACCGGTACCC
AAGAAGACGTCCAAGGCGAAGGCACAGAAGTCGGGAAAAAAGAACAAGCCCAAGGCTTAA
Transcript >Hirsu2|1294
ATGGGCCGCATTCCGCACGGATTCTACGAGTACGAAATGAGGCAGTACCTATCGCAATTCGGGCCCGTCAGCCGC
CTCCGTCTTTCGCGAAACAGGAAGACGGGAGCCAGCAAGCACTTTGCCTTTGTCGAGTTCGAGAGCGAGAGCACG
GCCGAGATCGTCGCCAAAACCATGGACAACTATCTGCTGTTCGGACACATCCTCAAGGTGAAGATGGTGCCCAAG
AGCCAGGTCCACGAGGAACTGTTCAAGGGCGCCAACAAGAGGTTCAAGAAGGTGCCGTGGAACAAGATGGCAGGG
CTGAAGCTGGCCAAGCCGAAGACCGAGACTGCTTGGGAGGCAAAAGTGGAAAGGGAGCGAGCCAATCGGGCCCAG
AGAGCCGACAAGCTCAAGGCCATGGGCTACGACTTCGAGGCACCGGACTTGAAGGAGGTCCCGGCAGCTTTTCCC
GCAGGCGGCGAAGATGTCAATGTCCAGGCGGTCGAGGCCGCTCCTGCGGTGTCTGAGGAGGCGACGAAAATGGAG
GAGGTGCGCGAGCAAGAGGAGGTGCCGGCGGAGGCAACGGCGGCTGAGGCCGAGGCTGCACAGGCACCGGTACCC
AAGAAGACGTCCAAGGCGAAGGCACAGAAGTCGGGAAAAAAGAACAAGCCCAAGGCTTAA
Gene >Hirsu2|1294
ATGGGCCGCATTCCGCACGGATTCTACGAGTACGAAATGAGGCAGTACCTATCGCAATTCGGGCCCGTCAGCCGC
CTCCGTCTTTCGCGAAACAGGAAGACGGGAGCCAGCAAGCACTTTGCCTTTGTCGAGTTCGAGAGCGAGAGCACG
GCCGAGATCGTCGCCAAAACCATGGACAACTATCTGCTGTTCGGACACATCCTCAAGGTGAAGATGGTGCCCAAG
AGCCAGGTCCACGAGGAACTGTTCAAGGGCGCCAACAAGAGGTTCAAGAAGGTGCCGTGGAACAAGATGGCAGGG
CTGAAGCTGGCCAAGCCGAAGACCGAGACTGCTTGGGAGGCAAAAGTGGAAAGGGAGCGAGCCAATCGGGCCCAG
AGAGCCGACAAGCTCAAGGCCATGGGCTACGACTTCGAGGCACCGGACTTGAAGGAGGTCCCGGCAGCTTTTCCC
GCAGGCGGCGAAGATGTCAATGTCCAGGCGGTCGAGGCCGCTCCTGCGGTGTCTGAGGAGGCGACGAAAATGGAG
GAGGTGCGCGAGCAAGAGGAGGTGCCGGCGGAGGCAACGGCGGCTGAGGCCGAGGCTGCACAGGCACCGGTACCC
AAGAAGACGTCCAAGGCGAAGGCACAGAAGTCGGGAAAAAAGAACAAGCCCAAGGCTTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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