Protein ID | Hirsu2|1289 |
Gene name | |
Location | Contig_1280:4561..5737 |
Strand | - |
Gene length (bp) | 1176 |
Transcript length (bp) | 1119 |
Coding sequence length (bp) | 1119 |
Protein length (aa) | 373 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF12955 | DUF3844 | Domain of unknown function (DUF3844) | 1.0E-35 | 263 | 366 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O74728|YH93_SCHPO | Uncharacterized endoplasmic reticulum membrane protein C1709.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1709.03 PE=3 SV=2 | 169 | 364 | 5.0E-18 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.0959 | 0.0721 | 0.106 | 0.2449 | 0.1959 | 0.0276 | 0.8476 | 0.4539 | 0.57 | 0.0137 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 17 | 0.929035 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 327 | 349 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 4896 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1289 MKLNAGLVAASCGLALASQPAAEVYLLPAREASSTATSLPAALARLVLLQRLAPTDQGPSSSDFPKDTSVEEVVS ALNRFGKSTPPLFADGDDKAPSQLVVMLEGMTRGQMDDLGRTLGKGPAMTIPNPPSTSAHNDLVDFDFYGTGATN AAGCKAQQITNPHEKCWGGKQSAYAKLDFEKDSTLVGDVLQSLKKVSQRELQTTLVLLPSTANSGSWSDRSRELR RRQAEQVMTSVDQAAQAAVTNTAQNAYVLAPAQRILSCFPNENECASTTNNCSGHGSCMDKYAKEDGSTSKDACF VCHCLSTRSESGSLTHWAGQTCAKKDVSVAFWLFAGFTLALVGIVWLAISMLLNVGQEKLPGVIGAGVSRSR* |
Coding | >Hirsu2|1289 ATGAAGCTGAACGCCGGGCTCGTTGCGGCCTCTTGCGGCCTCGCCCTGGCCTCGCAGCCAGCGGCCGAGGTCTAC CTCCTGCCGGCCCGCGAGGCCTCGTCGACGGCGACGTCTCTGCCCGCCGCCCTGGCGCGCCTGGTGCTGCTGCAG CGGCTGGCGCCCACCGACCAGGGCCCTTCGTCCAGCGACTTCCCCAAGGACACGAGCGTCGAAGAGGTCGTTTCC GCGCTCAACCGGTTCGGGAAGTCTACCCCGCCGCTGTTCGCCGACGGCGACGACAAGGCGCCCAGCCAGCTCGTC GTGATGCTGGAGGGCATGACGAGGGGGCAGATGGACGACTTGGGGCGCACGCTGGGCAAGGGGCCGGCCATGACG ATTCCGAACCCGCCATCTACCAGCGCCCACAACGACCTTGTGGACTTTGATTTCTACGGCACCGGGGCAACGAAT GCCGCCGGCTGCAAGGCGCAGCAGATCACCAACCCACACGAGAAATGCTGGGGCGGCAAGCAATCCGCCTATGCA AAATTGGACTTCGAAAAGGACTCGACGCTTGTCGGTGACGTACTGCAAAGCCTGAAGAAGGTCTCGCAGCGTGAA CTGCAGACGACACTGGTGCTGTTGCCCTCGACGGCAAACTCGGGCTCGTGGTCGGACCGGTCCCGAGAGCTGCGG CGCCGGCAGGCGGAGCAGGTCATGACCTCGGTGGACCAGGCGGCGCAAGCAGCTGTGACGAACACGGCGCAGAAC GCGTACGTGTTGGCGCCCGCGCAGCGCATCCTGTCGTGCTTCCCCAACGAGAACGAATGCGCCAGCACGACGAAC AACTGCTCGGGCCACGGGTCGTGCATGGACAAGTATGCCAAGGAGGACGGGTCGACCAGCAAGGACGCCTGCTTC GTCTGCCACTGCCTGAGCACCCGCAGCGAGTCCGGCAGCCTGACGCACTGGGCCGGGCAGACGTGTGCGAAGAAG GACGTGAGCGTTGCCTTTTGGCTCTTTGCCGGCTTCACCCTTGCCCTGGTCGGCATCGTGTGGCTGGCGATCTCG ATGCTGTTGAACGTCGGCCAGGAGAAGCTTCCAGGCGTCATCGGTGCGGGCGTCTCGCGGTCCAGATAG |
Transcript | >Hirsu2|1289 ATGAAGCTGAACGCCGGGCTCGTTGCGGCCTCTTGCGGCCTCGCCCTGGCCTCGCAGCCAGCGGCCGAGGTCTAC CTCCTGCCGGCCCGCGAGGCCTCGTCGACGGCGACGTCTCTGCCCGCCGCCCTGGCGCGCCTGGTGCTGCTGCAG CGGCTGGCGCCCACCGACCAGGGCCCTTCGTCCAGCGACTTCCCCAAGGACACGAGCGTCGAAGAGGTCGTTTCC GCGCTCAACCGGTTCGGGAAGTCTACCCCGCCGCTGTTCGCCGACGGCGACGACAAGGCGCCCAGCCAGCTCGTC GTGATGCTGGAGGGCATGACGAGGGGGCAGATGGACGACTTGGGGCGCACGCTGGGCAAGGGGCCGGCCATGACG ATTCCGAACCCGCCATCTACCAGCGCCCACAACGACCTTGTGGACTTTGATTTCTACGGCACCGGGGCAACGAAT GCCGCCGGCTGCAAGGCGCAGCAGATCACCAACCCACACGAGAAATGCTGGGGCGGCAAGCAATCCGCCTATGCA AAATTGGACTTCGAAAAGGACTCGACGCTTGTCGGTGACGTACTGCAAAGCCTGAAGAAGGTCTCGCAGCGTGAA CTGCAGACGACACTGGTGCTGTTGCCCTCGACGGCAAACTCGGGCTCGTGGTCGGACCGGTCCCGAGAGCTGCGG CGCCGGCAGGCGGAGCAGGTCATGACCTCGGTGGACCAGGCGGCGCAAGCAGCTGTGACGAACACGGCGCAGAAC GCGTACGTGTTGGCGCCCGCGCAGCGCATCCTGTCGTGCTTCCCCAACGAGAACGAATGCGCCAGCACGACGAAC AACTGCTCGGGCCACGGGTCGTGCATGGACAAGTATGCCAAGGAGGACGGGTCGACCAGCAAGGACGCCTGCTTC GTCTGCCACTGCCTGAGCACCCGCAGCGAGTCCGGCAGCCTGACGCACTGGGCCGGGCAGACGTGTGCGAAGAAG GACGTGAGCGTTGCCTTTTGGCTCTTTGCCGGCTTCACCCTTGCCCTGGTCGGCATCGTGTGGCTGGCGATCTCG ATGCTGTTGAACGTCGGCCAGGAGAAGCTTCCAGGCGTCATCGGTGCGGGCGTCTCGCGGTCCAGATAG |
Gene | >Hirsu2|1289 ATGAAGCTGAACGCCGGGCTCGTTGCGGCCTCTTGCGGCCTCGCCCTGGCCTCGCAGCCAGCGGCCGAGGTCTAC CTCCTGCCGGCCCGCGAGGCCTCGTCGACGGCGACGTCTCTGCCCGCCGCCCTGGCGCGCCTGGTGCTGCTGCAG CGGCTGGCGCCCACCGACCAGGGCCCTTCGTCCAGCGACTTCCCCAAGGACACGAGCGTCGAAGAGGTCGTTTCC GCGCTCAACCGGTTCGGGAAGTCTACCCCGCCGCTGTTCGCCGACGGCGACGACAAGGCGCCCAGCCAGCTCGTC GTGATGCTGGAGGGCATGACGAGGGGGCAGATGGACGACTTGGGGCGCACGCTGGGCAAGGGGCCGGCCATGACG ATTCCGAACCCGCCATCTACCAGCGCCCACAACGACCTTGTGGACTTTGATTTCTACGGCACCGGGGCAACGAAT GCCGCCGGCTGCAAGGCGCAGCAGATCACCAACCCACACGAGAAATGCTGGGGCGGCAAGCAATCCGCCTATGCA AAATTGGACTTCGAAAAGGTAGGCTCGAGCATGGGTACCAACAATGCGTGGGGCTGACGAGATGGTGGTCGGCAG GACTCGACGCTTGTCGGTGACGTACTGCAAAGCCTGAAGAAGGTCTCGCAGCGTGAACTGCAGACGACACTGGTG CTGTTGCCCTCGACGGCAAACTCGGGCTCGTGGTCGGACCGGTCCCGAGAGCTGCGGCGCCGGCAGGCGGAGCAG GTCATGACCTCGGTGGACCAGGCGGCGCAAGCAGCTGTGACGAACACGGCGCAGAACGCGTACGTGTTGGCGCCC GCGCAGCGCATCCTGTCGTGCTTCCCCAACGAGAACGAATGCGCCAGCACGACGAACAACTGCTCGGGCCACGGG TCGTGCATGGACAAGTATGCCAAGGAGGACGGGTCGACCAGCAAGGACGCCTGCTTCGTCTGCCACTGCCTGAGC ACCCGCAGCGAGTCCGGCAGCCTGACGCACTGGGCCGGGCAGACGTGTGCGAAGAAGGACGTGAGCGTTGCCTTT TGGCTCTTTGCCGGCTTCACCCTTGCCCTGGTCGGCATCGTGTGGCTGGCGATCTCGATGCTGTTGAACGTCGGC CAGGAGAAGCTTCCAGGCGTCATCGGTGCGGGCGTCTCGCGGTCCAGATAG |