© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1289 |
| Gene name | |
| Location | Contig_1280:4561..5737 |
| Strand | - |
| Gene length (bp) | 1176 |
| Transcript length (bp) | 1119 |
| Coding sequence length (bp) | 1119 |
| Protein length (aa) | 373 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12955 | DUF3844 | Domain of unknown function (DUF3844) | 1.0E-35 | 263 | 366 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74728|YH93_SCHPO | Uncharacterized endoplasmic reticulum membrane protein C1709.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1709.03 PE=3 SV=2 | 169 | 364 | 5.0E-18 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 327 | 349 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1289 MKLNAGLVAASCGLALASQPAAEVYLLPAREASSTATSLPAALARLVLLQRLAPTDQGPSSSDFPKDTSVEEVVS ALNRFGKSTPPLFADGDDKAPSQLVVMLEGMTRGQMDDLGRTLGKGPAMTIPNPPSTSAHNDLVDFDFYGTGATN AAGCKAQQITNPHEKCWGGKQSAYAKLDFEKDSTLVGDVLQSLKKVSQRELQTTLVLLPSTANSGSWSDRSRELR RRQAEQVMTSVDQAAQAAVTNTAQNAYVLAPAQRILSCFPNENECASTTNNCSGHGSCMDKYAKEDGSTSKDACF VCHCLSTRSESGSLTHWAGQTCAKKDVSVAFWLFAGFTLALVGIVWLAISMLLNVGQEKLPGVIGAGVSRSR* |
| Coding | >Hirsu2|1289 ATGAAGCTGAACGCCGGGCTCGTTGCGGCCTCTTGCGGCCTCGCCCTGGCCTCGCAGCCAGCGGCCGAGGTCTAC CTCCTGCCGGCCCGCGAGGCCTCGTCGACGGCGACGTCTCTGCCCGCCGCCCTGGCGCGCCTGGTGCTGCTGCAG CGGCTGGCGCCCACCGACCAGGGCCCTTCGTCCAGCGACTTCCCCAAGGACACGAGCGTCGAAGAGGTCGTTTCC GCGCTCAACCGGTTCGGGAAGTCTACCCCGCCGCTGTTCGCCGACGGCGACGACAAGGCGCCCAGCCAGCTCGTC GTGATGCTGGAGGGCATGACGAGGGGGCAGATGGACGACTTGGGGCGCACGCTGGGCAAGGGGCCGGCCATGACG ATTCCGAACCCGCCATCTACCAGCGCCCACAACGACCTTGTGGACTTTGATTTCTACGGCACCGGGGCAACGAAT GCCGCCGGCTGCAAGGCGCAGCAGATCACCAACCCACACGAGAAATGCTGGGGCGGCAAGCAATCCGCCTATGCA AAATTGGACTTCGAAAAGGACTCGACGCTTGTCGGTGACGTACTGCAAAGCCTGAAGAAGGTCTCGCAGCGTGAA CTGCAGACGACACTGGTGCTGTTGCCCTCGACGGCAAACTCGGGCTCGTGGTCGGACCGGTCCCGAGAGCTGCGG CGCCGGCAGGCGGAGCAGGTCATGACCTCGGTGGACCAGGCGGCGCAAGCAGCTGTGACGAACACGGCGCAGAAC GCGTACGTGTTGGCGCCCGCGCAGCGCATCCTGTCGTGCTTCCCCAACGAGAACGAATGCGCCAGCACGACGAAC AACTGCTCGGGCCACGGGTCGTGCATGGACAAGTATGCCAAGGAGGACGGGTCGACCAGCAAGGACGCCTGCTTC GTCTGCCACTGCCTGAGCACCCGCAGCGAGTCCGGCAGCCTGACGCACTGGGCCGGGCAGACGTGTGCGAAGAAG GACGTGAGCGTTGCCTTTTGGCTCTTTGCCGGCTTCACCCTTGCCCTGGTCGGCATCGTGTGGCTGGCGATCTCG ATGCTGTTGAACGTCGGCCAGGAGAAGCTTCCAGGCGTCATCGGTGCGGGCGTCTCGCGGTCCAGATAG |
| Transcript | >Hirsu2|1289 ATGAAGCTGAACGCCGGGCTCGTTGCGGCCTCTTGCGGCCTCGCCCTGGCCTCGCAGCCAGCGGCCGAGGTCTAC CTCCTGCCGGCCCGCGAGGCCTCGTCGACGGCGACGTCTCTGCCCGCCGCCCTGGCGCGCCTGGTGCTGCTGCAG CGGCTGGCGCCCACCGACCAGGGCCCTTCGTCCAGCGACTTCCCCAAGGACACGAGCGTCGAAGAGGTCGTTTCC GCGCTCAACCGGTTCGGGAAGTCTACCCCGCCGCTGTTCGCCGACGGCGACGACAAGGCGCCCAGCCAGCTCGTC GTGATGCTGGAGGGCATGACGAGGGGGCAGATGGACGACTTGGGGCGCACGCTGGGCAAGGGGCCGGCCATGACG ATTCCGAACCCGCCATCTACCAGCGCCCACAACGACCTTGTGGACTTTGATTTCTACGGCACCGGGGCAACGAAT GCCGCCGGCTGCAAGGCGCAGCAGATCACCAACCCACACGAGAAATGCTGGGGCGGCAAGCAATCCGCCTATGCA AAATTGGACTTCGAAAAGGACTCGACGCTTGTCGGTGACGTACTGCAAAGCCTGAAGAAGGTCTCGCAGCGTGAA CTGCAGACGACACTGGTGCTGTTGCCCTCGACGGCAAACTCGGGCTCGTGGTCGGACCGGTCCCGAGAGCTGCGG CGCCGGCAGGCGGAGCAGGTCATGACCTCGGTGGACCAGGCGGCGCAAGCAGCTGTGACGAACACGGCGCAGAAC GCGTACGTGTTGGCGCCCGCGCAGCGCATCCTGTCGTGCTTCCCCAACGAGAACGAATGCGCCAGCACGACGAAC AACTGCTCGGGCCACGGGTCGTGCATGGACAAGTATGCCAAGGAGGACGGGTCGACCAGCAAGGACGCCTGCTTC GTCTGCCACTGCCTGAGCACCCGCAGCGAGTCCGGCAGCCTGACGCACTGGGCCGGGCAGACGTGTGCGAAGAAG GACGTGAGCGTTGCCTTTTGGCTCTTTGCCGGCTTCACCCTTGCCCTGGTCGGCATCGTGTGGCTGGCGATCTCG ATGCTGTTGAACGTCGGCCAGGAGAAGCTTCCAGGCGTCATCGGTGCGGGCGTCTCGCGGTCCAGATAG |
| Gene | >Hirsu2|1289 ATGAAGCTGAACGCCGGGCTCGTTGCGGCCTCTTGCGGCCTCGCCCTGGCCTCGCAGCCAGCGGCCGAGGTCTAC CTCCTGCCGGCCCGCGAGGCCTCGTCGACGGCGACGTCTCTGCCCGCCGCCCTGGCGCGCCTGGTGCTGCTGCAG CGGCTGGCGCCCACCGACCAGGGCCCTTCGTCCAGCGACTTCCCCAAGGACACGAGCGTCGAAGAGGTCGTTTCC GCGCTCAACCGGTTCGGGAAGTCTACCCCGCCGCTGTTCGCCGACGGCGACGACAAGGCGCCCAGCCAGCTCGTC GTGATGCTGGAGGGCATGACGAGGGGGCAGATGGACGACTTGGGGCGCACGCTGGGCAAGGGGCCGGCCATGACG ATTCCGAACCCGCCATCTACCAGCGCCCACAACGACCTTGTGGACTTTGATTTCTACGGCACCGGGGCAACGAAT GCCGCCGGCTGCAAGGCGCAGCAGATCACCAACCCACACGAGAAATGCTGGGGCGGCAAGCAATCCGCCTATGCA AAATTGGACTTCGAAAAGGTAGGCTCGAGCATGGGTACCAACAATGCGTGGGGCTGACGAGATGGTGGTCGGCAG GACTCGACGCTTGTCGGTGACGTACTGCAAAGCCTGAAGAAGGTCTCGCAGCGTGAACTGCAGACGACACTGGTG CTGTTGCCCTCGACGGCAAACTCGGGCTCGTGGTCGGACCGGTCCCGAGAGCTGCGGCGCCGGCAGGCGGAGCAG GTCATGACCTCGGTGGACCAGGCGGCGCAAGCAGCTGTGACGAACACGGCGCAGAACGCGTACGTGTTGGCGCCC GCGCAGCGCATCCTGTCGTGCTTCCCCAACGAGAACGAATGCGCCAGCACGACGAACAACTGCTCGGGCCACGGG TCGTGCATGGACAAGTATGCCAAGGAGGACGGGTCGACCAGCAAGGACGCCTGCTTCGTCTGCCACTGCCTGAGC ACCCGCAGCGAGTCCGGCAGCCTGACGCACTGGGCCGGGCAGACGTGTGCGAAGAAGGACGTGAGCGTTGCCTTT TGGCTCTTTGCCGGCTTCACCCTTGCCCTGGTCGGCATCGTGTGGCTGGCGATCTCGATGCTGTTGAACGTCGGC CAGGAGAAGCTTCCAGGCGTCATCGGTGCGGGCGTCTCGCGGTCCAGATAG |