© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|126 |
| Gene name | |
| Location | Contig_102:11358..11655 |
| Strand | - |
| Gene length (bp) | 297 |
| Transcript length (bp) | 225 |
| Coding sequence length (bp) | 225 |
| Protein length (aa) | 75 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain|Mitochondrial transit peptide | 0.4475 | 0.4373 | 0.1949 | 0.1361 | 0.5939 | 0.0391 | 0.6808 | 0.5153 | 0.4832 | 0.1822 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 35 | 57 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 7483 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|11085 |
| Ophiocordyceps subramaniannii | Hirsu2|126 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|126 MRHALAAQPGRQLHPVGAGSSSAAYIFSLDMVSRCYHFFLAQPVVAGLFFFIWDMFLPFSYVLLHVQVVGTEPP* |
| Coding | >Hirsu2|126 ATGCGCCACGCACTCGCTGCGCAACCCGGTCGTCAGCTGCATCCCGTCGGCGCAGGTAGCAGCAGCGCCGCCTAC ATCTTCAGCCTGGACATGGTCTCGCGCTGCTACCACTTCTTTCTGGCGCAGCCGGTCGTCGCCGGCCTCTTCTTC TTCATATGGGATATGTTTCTGCCCTTCAGCTACGTCCTACTGCACGTCCAGGTCGTGGGCACCGAGCCGCCCTGA |
| Transcript | >Hirsu2|126 ATGCGCCACGCACTCGCTGCGCAACCCGGTCGTCAGCTGCATCCCGTCGGCGCAGGTAGCAGCAGCGCCGCCTAC ATCTTCAGCCTGGACATGGTCTCGCGCTGCTACCACTTCTTTCTGGCGCAGCCGGTCGTCGCCGGCCTCTTCTTC TTCATATGGGATATGTTTCTGCCCTTCAGCTACGTCCTACTGCACGTCCAGGTCGTGGGCACCGAGCCGCCCTGA |
| Gene | >Hirsu2|126 ATGCGCCACGCACTCGCTGCGCAACCCGGTCGTCAGCTGCATCCCGTCGGCGCAGGTGTTCGTCGTGATCTTCTC CGGCACCGTCTTTTCCGTATCTTCAACCGTTTCAGCACGCCCTAGAAGCTTTAGAGCAGCAGCGCCGCCTACATC TTCAGCCTGGACATGGTCTCGCGCTGCTACCACTTCTTTCTGGCGCAGCCGGTCGTCGCCGGCCTCTTCTTCTTC ATATGGGATATGTTTCTGCCCTTCAGCTACGTCCTACTGCACGTCCAGGTCGTGGGCACCGAGCCGCCCTGA |