Protein ID | Hirsu2|1190 |
Gene name | |
Location | Contig_1253:38..2301 |
Strand | - |
Gene length (bp) | 2263 |
Transcript length (bp) | 1968 |
Coding sequence length (bp) | 1968 |
Protein length (aa) | 656 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13632 | Glyco_trans_2_3 | Glycosyl transferase family group 2 | 5.1E-21 | 268 | 533 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Golgi apparatus | Signal peptide|Transmembrane domain | 0.165 | 0.1007 | 0.1616 | 0.3653 | 0.0554 | 0.0094 | 0.6072 | 0.4979 | 0.8269 | 0.0082 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 12 | 29 | 17 |
2 | 59 | 81 | 22 |
3 | 514 | 533 | 19 |
4 | 543 | 565 | 22 |
CAZyme category | E-value | Start | End |
---|---|---|---|
GT2_Glyco_trans_2_3 | 3.4E-22 | 268 | 533 |
Orthofinder run ID | 4 |
Orthogroup | 1580 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1190 MSLFAWCSRRAGGLSMMALLGLCYWVISQESTLQRHGYKFERPGTPGASYSSTSTSGAGVWTFVFAYYCLLIHVL VFIFPLRACWSVWDITQALRRSVHCRVSENFKMALRRRGSSTSISSSETLTSETLTSSDGNAYSSTASEASDVEP DMYTDAADAALDPVIHAIVVPNYKEEMDTLRETLEVLASHPQAHSSYDIYLGMEQREAHGESKALNLIQEFVKKF RSIDYTLHPADIPGESAGKGSNLGWAARKLSAKYSMAVRKNVIVTGIDADSHLSPRYFANVSMMHLSHPETATTT LYAAPIVFDRNAHNVPAIVRVADILWCAAGISGLYRGSSIAPPTSVYSLPLELVDRVGGWDCDAEAIGEDLHMYL KCFFALNGNLTCRTILSPVSQSNVTGGGKGGIRGTIIDMQARYKQALRHMWGALDTGFALRQAAEMWQERKHTSR AFRPLHRSQGDSSNCYFPINHASDGNVDHPRENGVFSDVTQDTLKEPHWEHILYLFHRLFEAHFLPVHMTILVLA SALYVWATDGKDDPNNLGWIFSLCNVLRTLGFIEVACYLFLYESFHRICVTTREREMTKAGLADGMCFSHRSIKR NMIDYVLVPLVAPLYGAIPCAQAEISHFWTVDLIYTVSKKVTRQRARSMVADDMA* |
Coding | >Hirsu2|1190 ATGTCTCTGTTCGCATGGTGCTCGCGACGGGCGGGCGGCCTCAGCATGATGGCCCTGCTCGGCCTCTGCTACTGG GTCATTTCACAGGAATCGACGCTCCAACGGCACGGCTACAAGTTTGAGCGGCCGGGGACGCCTGGCGCATCCTAC TCGTCCACCTCGACGTCGGGCGCCGGCGTCTGGACCTTCGTCTTCGCCTACTACTGCCTGCTCATCCACGTCCTC GTCTTCATCTTCCCCCTCCGCGCTTGCTGGTCCGTCTGGGACATCACTCAGGCCCTGCGCCGCTCCGTCCACTGC CGCGTTAGCGAGAATTTCAAGATGGCCCTGCGCCGCCGCGGTTCCAGCACCTCCATCTCGAGCTCCGAGACGCTG ACGTCGGAAACGCTCACCTCGTCCGACGGCAACGCCTACTCGTCGACGGCCAGCGAGGCCAGCGACGTCGAGCCG GACATGTACACCGACGCCGCCGACGCCGCCCTCGACCCCGTCATTCACGCCATCGTCGTCCCCAACTACAAGGAG GAAATGGACACGCTCAGGGAGACGCTCGAGGTCCTGGCTTCGCACCCCCAGGCGCATTCTTCCTACGATATTTAT CTCGGCATGGAGCAGCGCGAGGCGCATGGCGAATCAAAGGCCCTCAACCTCATCCAAGAATTCGTCAAGAAGTTC CGCTCCATCGACTACACCCTCCACCCCGCCGACATCCCGGGCGAGTCCGCCGGCAAGGGCAGCAACCTCGGGTGG GCCGCGAGGAAGCTCAGCGCCAAGTACTCGATGGCGGTTCGGAAGAATGTCATTGTCACGGGAATCGACGCCGAT AGCCACCTCTCGCCAAGGTACTTCGCCAACGTCAGCATGATGCACCTGTCTCACCCGGAGACGGCGACGACGACA CTGTACGCCGCGCCCATCGTCTTCGACCGCAACGCCCACAACGTGCCCGCCATCGTCCGCGTCGCCGACATCCTC TGGTGCGCCGCCGGCATCTCGGGCCTGTACCGGGGCTCGTCGATTGCGCCGCCCACGTCCGTCTACTCGCTGCCG CTCGAGCTCGTCGACCGCGTCGGCGGCTGGGACTGCGACGCCGAGGCCATCGGCGAGGACCTGCACATGTACCTC AAGTGCTTCTTCGCCCTCAACGGCAACCTCACCTGCCGCACCATCCTGAGCCCCGTGAGCCAGAGCAACGTGACG GGCGGCGGCAAGGGCGGCATCCGCGGCACCATCATCGACATGCAGGCCCGGTACAAGCAGGCCCTGCGGCACATG TGGGGGGCCCTCGACACGGGCTTCGCCCTGCGCCAGGCGGCCGAGATGTGGCAGGAGCGCAAGCACACGTCGAGG GCCTTTCGCCCGCTGCACCGCAGCCAGGGCGACAGCTCCAACTGCTACTTCCCCATCAACCACGCGTCCGACGGC AACGTTGACCACCCGCGCGAGAACGGCGTCTTCTCGGACGTGACGCAGGACACGCTCAAGGAGCCGCACTGGGAG CACATACTGTACCTCTTCCACCGCCTGTTCGAGGCGCACTTCCTGCCGGTGCACATGACGATCCTGGTCCTGGCC TCGGCGCTGTACGTGTGGGCGACGGACGGCAAGGACGACCCCAACAACCTGGGCTGGATCTTCTCGCTCTGCAAC GTGCTGCGGACGCTGGGCTTCATCGAGGTGGCCTGCTACCTGTTCCTCTACGAAAGCTTCCACCGGATATGCGTG ACGACGCGCGAGCGGGAGATGACCAAGGCGGGCCTCGCCGACGGCATGTGCTTCTCGCACCGATCCATCAAGCGC AACATGATTGACTACGTCCTGGTGCCGCTGGTGGCGCCGCTGTACGGCGCGATACCGTGCGCCCAGGCCGAGATT TCGCACTTTTGGACGGTCGACTTGATCTACACGGTCAGCAAGAAGGTGACGCGACAACGAGCCCGGTCGATGGTG GCCGACGACATGGCATGA |
Transcript | >Hirsu2|1190 ATGTCTCTGTTCGCATGGTGCTCGCGACGGGCGGGCGGCCTCAGCATGATGGCCCTGCTCGGCCTCTGCTACTGG GTCATTTCACAGGAATCGACGCTCCAACGGCACGGCTACAAGTTTGAGCGGCCGGGGACGCCTGGCGCATCCTAC TCGTCCACCTCGACGTCGGGCGCCGGCGTCTGGACCTTCGTCTTCGCCTACTACTGCCTGCTCATCCACGTCCTC GTCTTCATCTTCCCCCTCCGCGCTTGCTGGTCCGTCTGGGACATCACTCAGGCCCTGCGCCGCTCCGTCCACTGC CGCGTTAGCGAGAATTTCAAGATGGCCCTGCGCCGCCGCGGTTCCAGCACCTCCATCTCGAGCTCCGAGACGCTG ACGTCGGAAACGCTCACCTCGTCCGACGGCAACGCCTACTCGTCGACGGCCAGCGAGGCCAGCGACGTCGAGCCG GACATGTACACCGACGCCGCCGACGCCGCCCTCGACCCCGTCATTCACGCCATCGTCGTCCCCAACTACAAGGAG GAAATGGACACGCTCAGGGAGACGCTCGAGGTCCTGGCTTCGCACCCCCAGGCGCATTCTTCCTACGATATTTAT CTCGGCATGGAGCAGCGCGAGGCGCATGGCGAATCAAAGGCCCTCAACCTCATCCAAGAATTCGTCAAGAAGTTC CGCTCCATCGACTACACCCTCCACCCCGCCGACATCCCGGGCGAGTCCGCCGGCAAGGGCAGCAACCTCGGGTGG GCCGCGAGGAAGCTCAGCGCCAAGTACTCGATGGCGGTTCGGAAGAATGTCATTGTCACGGGAATCGACGCCGAT AGCCACCTCTCGCCAAGGTACTTCGCCAACGTCAGCATGATGCACCTGTCTCACCCGGAGACGGCGACGACGACA CTGTACGCCGCGCCCATCGTCTTCGACCGCAACGCCCACAACGTGCCCGCCATCGTCCGCGTCGCCGACATCCTC TGGTGCGCCGCCGGCATCTCGGGCCTGTACCGGGGCTCGTCGATTGCGCCGCCCACGTCCGTCTACTCGCTGCCG CTCGAGCTCGTCGACCGCGTCGGCGGCTGGGACTGCGACGCCGAGGCCATCGGCGAGGACCTGCACATGTACCTC AAGTGCTTCTTCGCCCTCAACGGCAACCTCACCTGCCGCACCATCCTGAGCCCCGTGAGCCAGAGCAACGTGACG GGCGGCGGCAAGGGCGGCATCCGCGGCACCATCATCGACATGCAGGCCCGGTACAAGCAGGCCCTGCGGCACATG TGGGGGGCCCTCGACACGGGCTTCGCCCTGCGCCAGGCGGCCGAGATGTGGCAGGAGCGCAAGCACACGTCGAGG GCCTTTCGCCCGCTGCACCGCAGCCAGGGCGACAGCTCCAACTGCTACTTCCCCATCAACCACGCGTCCGACGGC AACGTTGACCACCCGCGCGAGAACGGCGTCTTCTCGGACGTGACGCAGGACACGCTCAAGGAGCCGCACTGGGAG CACATACTGTACCTCTTCCACCGCCTGTTCGAGGCGCACTTCCTGCCGGTGCACATGACGATCCTGGTCCTGGCC TCGGCGCTGTACGTGTGGGCGACGGACGGCAAGGACGACCCCAACAACCTGGGCTGGATCTTCTCGCTCTGCAAC GTGCTGCGGACGCTGGGCTTCATCGAGGTGGCCTGCTACCTGTTCCTCTACGAAAGCTTCCACCGGATATGCGTG ACGACGCGCGAGCGGGAGATGACCAAGGCGGGCCTCGCCGACGGCATGTGCTTCTCGCACCGATCCATCAAGCGC AACATGATTGACTACGTCCTGGTGCCGCTGGTGGCGCCGCTGTACGGCGCGATACCGTGCGCCCAGGCCGAGATT TCGCACTTTTGGACGGTCGACTTGATCTACACGGTCAGCAAGAAGGTGACGCGACAACGAGCCCGGTCGATGGTG GCCGACGACATGGCATGA |
Gene | >Hirsu2|1190 ATGTCTCTGTTCGCATGGTGCTCGCGACGGGCGGGCGGCCTCAGCATGATGGCCCTGCTCGGCCTCTGCTACTGG GTCATTTCACAGGAATCGACGCTCCAACGGCACGGCTACAAGTTTGAGCGGCCGGGGACGCCTGGCGCATCCTAC TCGTCCACCTCGACGTCGGGCGCCGGCGTCTGGACCTTCGTCTTCGCCTACTACTGCCTGCTCATCCACGTCCTC GTCTTCATCTTCCCCCTCCGCGCTTGCTGGTCCGTCTGGGACATCACTCAGGCCCTGCGCCGCTCCGTCCACTGC CGCGTTAGCGAGAATTTCAAGATGGCCCTGCGCCGCCGCGGTTCCAGCACCTCCATCTCGAGCTCCGAGACGCTG ACGTCGGAAACGCTCACCTCGTCCGACGGCAACGCCTACTCGTCGACGGCCAGCGAGGCCAGCGACGTCGAGCCG GACATGTACACCGACGCCGCCGACGCCGCCCTCGACCCCGTCATTCACGCCATCGTCGTCCCCAACTACAAGGAG GAAATGGACACGCTCAGGGAGACGCTCGAGGTCCTGGCTTCGCACCCCCAGGCGCATTCTTCCTACGATGTGAGT CGAGGCGGCCCCCTCCCTCCGCGACGGCGGCCCTCTGCGCTGGCTGCCTGGCCGGCCGGCCCCCTCTGGTGGGGG CTTTACTCGGGGCGCGCTGCGCACCACGCGCAGACCCCGCGGCCCGGGCCAAAGCTTGCTGACGGCCGGCGCGCT AGATTTATCTCGGCATGGAGCAGCGCGAGGCGCATGGCGAATCAAAGGCCCTCAACCTCATCCAAGAATTCGTCA AGAAGTTCCGCTCCATCGACTACACCCTCCACCCCGCCGACATCCCGGGCGAGTCCGCCGGCAAGGGCAGCAACC TCGGGTGGGCCGCGAGGAAGCTCAGCGCCAAGTACTCGATGGCGGTTCGGAAGAATGTCATTGTCACGGGAATCG ACGGTACGGCCGTCCTCATCATCTCCCCCCCTCCCTTCGGGGGGCTGCCGTGTCACGCCCGCGCGGGCGTTGTGC GACGCGAGGCTGGGATCCGCCTCACCCTGCCCTTGGGCCCTCCGCTAACTAACTGCCTCCCGCAGCCGATAGCCA CCTCTCGCCAAGGTACTTCGCCAACGTCAGCATGATGCACCTGTCTCACCCGGAGACGGCGACGACGACACTGTA CGCCGCGCCCATCGTCTTCGACCGCAACGCCCACAACGTGCCCGCCATCGTCCGCGTCGCCGACATCCTCTGGTG CGCCGCCGGCATCTCGGGCCTGTACCGGGGCTCGTCGATTGCGCCGCCCACGTCCGTCTACTCGCTGCCGCTCGA GCTCGTCGACCGCGTCGGCGGCTGGGACTGCGACGCCGAGGCCATCGGCGAGGACCTGCACATGTACCTCAAGTG CTTCTTCGCCCTCAACGGCAACCTCACCTGCCGCACCATCCTGAGCCCCGTGAGCCAGAGCAACGTGACGGGCGG CGGCAAGGGCGGCATCCGCGGCACCATCATCGACATGCAGGCCCGGTACAAGCAGGCCCTGCGGCACATGTGGGG GGCCCTCGACACGGGCTTCGCCCTGCGCCAGGCGGCCGAGATGTGGCAGGAGCGCAAGCACACGTCGAGGGCCTT TCGCCCGCTGCACCGCAGCCAGGGCGACAGCTCCAACTGCTACTTCCCCATCAACCACGCGTCCGACGGCAACGT TGACCACCCGCGCGAGAACGGCGTCTTCTCGGACGTGACGCAGGACACGCTCAAGGAGCCGCACTGGGAGCACAT ACTGTACCTCTTCCACCGCCTGTTCGAGGCGCACTTCCTGCCGGTGCACATGACGATCCTGGTCCTGGCCTCGGC GCTGTACGTGTGGGCGACGGACGGCAAGGACGACCCCAACAACCTGGGCTGGATCTTCTCGCTCTGCAACGTGCT GCGGACGCTGGGCTTCATCGAGGTGGCCTGCTACCTGTTCCTCTACGAAAGCTTCCACCGGATATGCGTGACGAC GCGCGAGCGGGAGATGACCAAGGCGGGCCTCGCCGACGGCATGTGCTTCTCGCACCGATCCATCAAGCGCAACAT GATTGACTACGTCCTGGTGCCGCTGGTGGCGCCGCTGTACGGCGCGATACCGTGCGCCCAGGCCGAGATTTCGCA CTTTTGGACGGTCGACTTGATCTACACGGTCAGCAAGAAGGTGACGCGACAACGAGCCCGGTCGATGGTGGCCGA CGACATGGCATGA |