© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|117 |
| Gene name | |
| Location | Contig_1018:2425..3037 |
| Strand | + |
| Gene length (bp) | 612 |
| Transcript length (bp) | 414 |
| Coding sequence length (bp) | 414 |
| Protein length (aa) | 138 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01035 | DNA_binding_1 | 6-O-methylguanine DNA methyltransferase, DNA binding domain | 1.2E-25 | 9 | 98 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UTN9|ATL1_SCHPO | Alkyltransferase-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atl1 PE=1 SV=1 | 3 | 119 | 3.0E-26 |
| sp|A6B4U8|ATL_VIBPQ | DNA base-flipping protein OS=Vibrio parahaemolyticus serotype O3:K6 (strain AQ3810) GN=A79_1377 PE=1 SV=1 | 8 | 110 | 9.0E-15 |
| sp|P0AFP3|ATL_SHIFL | DNA base-flipping protein OS=Shigella flexneri GN=atl PE=3 SV=1 | 3 | 117 | 3.0E-12 |
| sp|P0AFP2|ATL_ECOLI | DNA base-flipping protein OS=Escherichia coli (strain K12) GN=atl PE=1 SV=1 | 3 | 117 | 3.0E-12 |
| sp|Q9ZET8|OGT_MYCPA | Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=ogt PE=3 SV=1 | 10 | 78 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0006281 | DNA repair | Yes |
| GO:0009987 | cellular process | No |
| GO:0050896 | response to stimulus | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006950 | response to stress | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0033554 | cellular response to stress | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0003674 | molecular_function | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.8178 | 0.7309 | 0.0139 | 0.0413 | 0.308 | 0.0919 | 0.1244 | 0.0283 | 0.0322 | 0.0367 |
| Orthofinder run ID | 4 |
| Orthogroup | 6027 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|117 MTRSDEAEAFFHAVYAATQEIPYGKVTTYGHIAHLVDAPGRARQVGICMKHLPTDATARFHNGNVPWFRVINSKG IISPRSDPSGARQQADALCAEGVEVTRRALGELAVDFAVHGWFPSALPSGDAGRDGSDGGGS* |
| Coding | >Hirsu2|117 ATGACCCGATCCGACGAGGCCGAGGCCTTCTTCCACGCCGTGTATGCGGCCACTCAGGAGATTCCGTACGGCAAG GTGACGACCTACGGGCACATCGCCCACCTCGTCGACGCCCCTGGGCGCGCCCGCCAAGTCGGGATCTGCATGAAG CACCTCCCGACCGACGCCACCGCCCGCTTCCACAATGGAAACGTGCCGTGGTTCCGGGTGATCAACAGCAAAGGC ATCATATCCCCGAGATCAGACCCATCCGGCGCCCGGCAGCAAGCCGACGCCCTCTGCGCCGAGGGCGTCGAGGTC ACCCGGCGCGCGCTCGGCGAGCTCGCCGTCGACTTCGCCGTGCACGGCTGGTTCCCGAGCGCGCTGCCCTCCGGG GACGCCGGCCGCGATGGGAGCGATGGGGGCGGGTCCTGA |
| Transcript | >Hirsu2|117 ATGACCCGATCCGACGAGGCCGAGGCCTTCTTCCACGCCGTGTATGCGGCCACTCAGGAGATTCCGTACGGCAAG GTGACGACCTACGGGCACATCGCCCACCTCGTCGACGCCCCTGGGCGCGCCCGCCAAGTCGGGATCTGCATGAAG CACCTCCCGACCGACGCCACCGCCCGCTTCCACAATGGAAACGTGCCGTGGTTCCGGGTGATCAACAGCAAAGGC ATCATATCCCCGAGATCAGACCCATCCGGCGCCCGGCAGCAAGCCGACGCCCTCTGCGCCGAGGGCGTCGAGGTC ACCCGGCGCGCGCTCGGCGAGCTCGCCGTCGACTTCGCCGTGCACGGCTGGTTCCCGAGCGCGCTGCCCTCCGGG GACGCCGGCCGCGATGGGAGCGATGGGGGCGGGTCCTGA |
| Gene | >Hirsu2|117 ATGACCCGATCCGACGAGGCCGAGGCCTTCTTCCACGCCGTGTATGCGGCCACTCAGGAGATTCCGTACGGCAAG GTGACGACCTACGGGCACATCGCCCACCTCGTCGACGCCCGTACGCCGTTCCCCCTTTCTTCCGGGAAGAGAGAG GCAGGAAAGCGTTTTTAGGACTGGACACAGCACAATCGACTGATGGATGGCATTCCAGCTGGGCGCGCCCGCCAA GTCGGGATCTGCATGAAGCACCTCCCGACCGACGCCACCGCCCGCTTCCACAATGGAAACGTGCCGTGGTTCCGG GTGATCAACAGCAAAGGCATCATATCCCCGAGGTCAGACACCCGGTTCTCGTGATACTGGCCTTTCCCACCTCAC ATCACTACCAACCCATTCCCGTCTCCAGCTCGACCGAGCTCACAAGCAGAGAGGAAGCGCAGATCAGACCCATCC GGCGCCCGGCAGCAAGCCGACGCCCTCTGCGCCGAGGGCGTCGAGGTCACCCGGCGCGCGCTCGGCGAGCTCGCC GTCGACTTCGCCGTGCACGGCTGGTTCCCGAGCGCGCTGCCCTCCGGGGACGCCGGCCGCGATGGGAGCGATGGG GGCGGGTCCTGA |