© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1129 |
| Gene name | |
| Location | Contig_1239:5621..7140 |
| Strand | + |
| Gene length (bp) | 1519 |
| Transcript length (bp) | 1470 |
| Coding sequence length (bp) | 1470 |
| Protein length (aa) | 490 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16114 | Citrate_bind | ATP citrate lyase citrate-binding | 1.4E-88 | 298 | 474 |
| PF08442 | ATP-grasp_2 | ATP-grasp domain | 4.3E-08 | 73 | 228 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13907|ACL2_SCHPO | Probable ATP-citrate synthase subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22A12.16 PE=1 SV=1 | 1 | 480 | 0.0E+00 |
| sp|Q2TCH3|ACLY_SHEEP | ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1 | 1 | 474 | 3.0E-140 |
| sp|Q32PF2|ACLY_BOVIN | ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1 | 1 | 474 | 3.0E-140 |
| sp|P53396|ACLY_HUMAN | ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3 | 1 | 474 | 5.0E-139 |
| sp|Q91V92|ACLY_MOUSE | ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1 | 1 | 474 | 3.0E-137 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13907|ACL2_SCHPO | Probable ATP-citrate synthase subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22A12.16 PE=1 SV=1 | 1 | 480 | 0.0E+00 |
| sp|Q2TCH3|ACLY_SHEEP | ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1 | 1 | 474 | 3.0E-140 |
| sp|Q32PF2|ACLY_BOVIN | ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1 | 1 | 474 | 3.0E-140 |
| sp|P53396|ACLY_HUMAN | ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3 | 1 | 474 | 5.0E-139 |
| sp|Q91V92|ACLY_MOUSE | ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1 | 1 | 474 | 3.0E-137 |
| sp|P16638|ACLY_RAT | ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1 | 1 | 476 | 4.0E-137 |
| sp|P53585|ACLY_CAEEL | Probable ATP-citrate synthase OS=Caenorhabditis elegans GN=D1005.1 PE=3 SV=1 | 1 | 474 | 2.0E-119 |
| sp|Q2QNG7|ACLA3_ORYSJ | ATP-citrate synthase alpha chain protein 3 OS=Oryza sativa subsp. japonica GN=ACLA-3 PE=2 SV=1 | 1 | 474 | 3.0E-104 |
| sp|Q2QZ86|ACLA2_ORYSJ | ATP-citrate synthase alpha chain protein 2 OS=Oryza sativa subsp. japonica GN=ACLA-2 PE=2 SV=2 | 1 | 474 | 4.0E-104 |
| sp|O22718|ACLA2_ARATH | ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana GN=ACLA-2 PE=2 SV=1 | 1 | 474 | 2.0E-103 |
| sp|Q9SGY2|ACLA1_ARATH | ATP-citrate synthase alpha chain protein 1 OS=Arabidopsis thaliana GN=ACLA-1 PE=1 SV=1 | 1 | 474 | 7.0E-102 |
| sp|O80526|ACLA3_ARATH | ATP-citrate synthase alpha chain protein 3 OS=Arabidopsis thaliana GN=ACLA-3 PE=2 SV=1 | 1 | 474 | 2.0E-101 |
| sp|Q53JY8|ACLA1_ORYSJ | ATP-citrate synthase subunit alpha chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLA-1 PE=3 SV=2 | 1 | 474 | 3.0E-90 |
| sp|B1YIL7|SUCC_EXIS2 | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=sucC PE=3 SV=1 | 85 | 447 | 1.0E-07 |
| sp|Q57663|SUCC_METJA | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=sucC PE=3 SV=1 | 51 | 255 | 2.0E-07 |
| sp|Q8CPH5|SUCC_STAES | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sucC PE=3 SV=1 | 85 | 455 | 3.0E-07 |
| sp|Q5HPU5|SUCC_STAEQ | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sucC PE=3 SV=1 | 85 | 455 | 3.0E-07 |
| sp|B9DPG0|SUCC_STACT | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus carnosus (strain TM300) GN=sucC PE=3 SV=1 | 85 | 447 | 6.0E-07 |
| sp|Q4L5U8|SUCC_STAHJ | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sucC PE=3 SV=1 | 85 | 254 | 2.0E-06 |
| sp|Q49X32|SUCC_STAS1 | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sucC PE=3 SV=1 | 85 | 447 | 7.0E-06 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Peroxisomal targeting signal | 0.7879 | 0.3766 | 0.0063 | 0.0403 | 0.2005 | 0.0362 | 0.0615 | 0.0336 | 0.1646 | 0.1629 |
| Orthofinder run ID | 4 |
| Orthogroup | 1553 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1129 MSAKSILEADGKAILNYHLTRAPVIKPSPLPTPTKHNPPARLASLHFPEDASVEDVLNQAEITYPWLLQAGAKFV AKPDQLIKRRGKSGLLALNKTWAEAKAWVAERAGKEQKVEHTTGVLRQFLVEPFVPHPQDTEYYININSVRDGDW ILFTHEGGVDVGDVDAKAQKLLIPVDLSQYPSNEEIAASLLKNVPKGVHKVLTDFISRLYAVYVDCQFTYLEINP LVVMPNADNTSAAVHFLDLAAKLDQTADFECGVKWAVARSPAALGLTNVAAVNGEKVNIDAGPPMEFPAPFGREL SKEEAYIADLDAKTGASLKLTVLNPNGRVWTLVAGGGASVVYADAIASAGFADDLANYGEYSGAPTESQTYHYAR TVLDLMLRAPMSDKGKVLFIGGGIANFTNVASTFKGVIRALRDYATQLKEHNVQIWVRRAGPNYQEGLKNMKAAT QEMGLDAKIFGPEMHVSGIVPLALVPGKWEESKAEEFRG* |
| Coding | >Hirsu2|1129 ATGTCTGCCAAGTCGATTCTCGAGGCCGACGGCAAGGCCATCCTCAACTACCACCTCACCCGGGCCCCCGTCATC AAGCCCAGCCCCCTGCCGACGCCGACCAAGCACAACCCGCCGGCGCGGCTGGCCTCGCTGCACTTCCCCGAGGAC GCCAGCGTCGAGGACGTGCTGAACCAGGCCGAGATCACGTACCCGTGGCTGCTCCAGGCCGGCGCCAAGTTCGTC GCGAAGCCGGACCAGCTCATCAAGCGACGGGGCAAGAGCGGCCTCTTGGCCCTGAACAAGACGTGGGCCGAGGCC AAGGCCTGGGTCGCGGAGCGGGCCGGCAAGGAGCAAAAGGTCGAGCACACGACGGGCGTGCTGAGGCAGTTCCTC GTCGAGCCGTTTGTGCCGCACCCGCAGGACACGGAGTACTACATCAACATCAACTCGGTGCGCGATGGAGACTGG ATCCTCTTCACGCACGAGGGCGGCGTGGACGTGGGCGACGTGGACGCCAAGGCGCAGAAGCTGCTGATCCCGGTG GACCTGTCGCAATACCCGTCCAACGAGGAGATTGCGGCGTCGCTGCTCAAGAACGTGCCCAAGGGGGTGCACAAG GTGCTGACCGACTTCATCAGCCGGCTGTACGCCGTCTACGTCGACTGCCAGTTCACGTACCTCGAGATCAACCCG CTGGTGGTGATGCCCAACGCGGACAACACGTCGGCGGCGGTGCACTTCCTCGACCTGGCCGCCAAGCTGGACCAG ACGGCCGACTTCGAGTGCGGGGTCAAGTGGGCGGTGGCGCGGTCGCCGGCGGCGCTGGGCCTGACCAACGTGGCG GCGGTCAACGGCGAGAAGGTCAACATCGACGCGGGGCCGCCGATGGAGTTCCCGGCGCCGTTTGGGCGCGAGCTG TCCAAGGAGGAGGCGTACATTGCCGACCTGGACGCCAAGACGGGCGCGTCGCTCAAGCTGACGGTGCTCAACCCC AACGGGCGGGTGTGGACGCTGGTGGCGGGCGGCGGCGCGTCGGTGGTGTACGCCGACGCCATCGCCTCGGCCGGC TTCGCCGACGACCTGGCCAACTACGGCGAGTACTCGGGGGCGCCGACGGAGTCGCAGACGTACCACTACGCGCGG ACGGTGCTGGACCTGATGCTGCGGGCGCCCATGTCGGACAAGGGCAAGGTGCTGTTCATCGGCGGCGGCATCGCC AACTTCACCAACGTGGCCAGCACGTTCAAGGGCGTGATCCGGGCGCTGCGCGACTACGCGACGCAGCTGAAGGAG CACAACGTGCAGATCTGGGTGCGCCGGGCCGGCCCCAACTACCAGGAGGGCCTGAAGAACATGAAGGCGGCGACG CAGGAGATGGGCCTCGACGCCAAGATCTTCGGCCCGGAGATGCACGTGTCGGGCATCGTGCCCCTGGCCCTGGTG CCGGGCAAGTGGGAGGAGAGCAAGGCGGAGGAGTTTAGGGGCTAG |
| Transcript | >Hirsu2|1129 ATGTCTGCCAAGTCGATTCTCGAGGCCGACGGCAAGGCCATCCTCAACTACCACCTCACCCGGGCCCCCGTCATC AAGCCCAGCCCCCTGCCGACGCCGACCAAGCACAACCCGCCGGCGCGGCTGGCCTCGCTGCACTTCCCCGAGGAC GCCAGCGTCGAGGACGTGCTGAACCAGGCCGAGATCACGTACCCGTGGCTGCTCCAGGCCGGCGCCAAGTTCGTC GCGAAGCCGGACCAGCTCATCAAGCGACGGGGCAAGAGCGGCCTCTTGGCCCTGAACAAGACGTGGGCCGAGGCC AAGGCCTGGGTCGCGGAGCGGGCCGGCAAGGAGCAAAAGGTCGAGCACACGACGGGCGTGCTGAGGCAGTTCCTC GTCGAGCCGTTTGTGCCGCACCCGCAGGACACGGAGTACTACATCAACATCAACTCGGTGCGCGATGGAGACTGG ATCCTCTTCACGCACGAGGGCGGCGTGGACGTGGGCGACGTGGACGCCAAGGCGCAGAAGCTGCTGATCCCGGTG GACCTGTCGCAATACCCGTCCAACGAGGAGATTGCGGCGTCGCTGCTCAAGAACGTGCCCAAGGGGGTGCACAAG GTGCTGACCGACTTCATCAGCCGGCTGTACGCCGTCTACGTCGACTGCCAGTTCACGTACCTCGAGATCAACCCG CTGGTGGTGATGCCCAACGCGGACAACACGTCGGCGGCGGTGCACTTCCTCGACCTGGCCGCCAAGCTGGACCAG ACGGCCGACTTCGAGTGCGGGGTCAAGTGGGCGGTGGCGCGGTCGCCGGCGGCGCTGGGCCTGACCAACGTGGCG GCGGTCAACGGCGAGAAGGTCAACATCGACGCGGGGCCGCCGATGGAGTTCCCGGCGCCGTTTGGGCGCGAGCTG TCCAAGGAGGAGGCGTACATTGCCGACCTGGACGCCAAGACGGGCGCGTCGCTCAAGCTGACGGTGCTCAACCCC AACGGGCGGGTGTGGACGCTGGTGGCGGGCGGCGGCGCGTCGGTGGTGTACGCCGACGCCATCGCCTCGGCCGGC TTCGCCGACGACCTGGCCAACTACGGCGAGTACTCGGGGGCGCCGACGGAGTCGCAGACGTACCACTACGCGCGG ACGGTGCTGGACCTGATGCTGCGGGCGCCCATGTCGGACAAGGGCAAGGTGCTGTTCATCGGCGGCGGCATCGCC AACTTCACCAACGTGGCCAGCACGTTCAAGGGCGTGATCCGGGCGCTGCGCGACTACGCGACGCAGCTGAAGGAG CACAACGTGCAGATCTGGGTGCGCCGGGCCGGCCCCAACTACCAGGAGGGCCTGAAGAACATGAAGGCGGCGACG CAGGAGATGGGCCTCGACGCCAAGATCTTCGGCCCGGAGATGCACGTGTCGGGCATCGTGCCCCTGGCCCTGGTG CCGGGCAAGTGGGAGGAGAGCAAGGCGGAGGAGTTTAGGGGCTAG |
| Gene | >Hirsu2|1129 ATGTCTGCCAAGTCGATTCTCGAGGCCGACGGCAAGGCCATCCTCAACTACCACCTCACCCGGGCCCCCGTCATC AAGCCCAGCCCCCTGCCGACGCCGACCAAGCACAACCCGCCGGCGCGGCTGGCCTCGCTGCACTTCCCCGAGGAC GCCAGCGTCGAGGACGTGCTGAACCAGGCCGAGATCACGTACCCGTGGCTGCTCCAGGCCGGCGCCAAGTTCGTC GCGAAGCCGGACCAGCTCATCAAGCGACGGGGCAAGAGCGGCCTCTTGGCCCTGAACAAGACGTGGGCCGAGGCC AAGGCCTGGGTCGCGGAGCGGGCCGGCAAGGAGCAAAAGGTCGAGCACACGACGGGCGTGCTGAGGCAGTTCCTC GTCGAGCCGTTTGTGCCGCACCCGCAGGACACGGAGTACTACATCAACATCAACTCGGTGCGCGATGTAAGTCGA CGTCGCGTGGCAGCGTCGTGTCCGGAGCTGACGGACGCAGGGAGACTGGATCCTCTTCACGCACGAGGGCGGCGT GGACGTGGGCGACGTGGACGCCAAGGCGCAGAAGCTGCTGATCCCGGTGGACCTGTCGCAATACCCGTCCAACGA GGAGATTGCGGCGTCGCTGCTCAAGAACGTGCCCAAGGGGGTGCACAAGGTGCTGACCGACTTCATCAGCCGGCT GTACGCCGTCTACGTCGACTGCCAGTTCACGTACCTCGAGATCAACCCGCTGGTGGTGATGCCCAACGCGGACAA CACGTCGGCGGCGGTGCACTTCCTCGACCTGGCCGCCAAGCTGGACCAGACGGCCGACTTCGAGTGCGGGGTCAA GTGGGCGGTGGCGCGGTCGCCGGCGGCGCTGGGCCTGACCAACGTGGCGGCGGTCAACGGCGAGAAGGTCAACAT CGACGCGGGGCCGCCGATGGAGTTCCCGGCGCCGTTTGGGCGCGAGCTGTCCAAGGAGGAGGCGTACATTGCCGA CCTGGACGCCAAGACGGGCGCGTCGCTCAAGCTGACGGTGCTCAACCCCAACGGGCGGGTGTGGACGCTGGTGGC GGGCGGCGGCGCGTCGGTGGTGTACGCCGACGCCATCGCCTCGGCCGGCTTCGCCGACGACCTGGCCAACTACGG CGAGTACTCGGGGGCGCCGACGGAGTCGCAGACGTACCACTACGCGCGGACGGTGCTGGACCTGATGCTGCGGGC GCCCATGTCGGACAAGGGCAAGGTGCTGTTCATCGGCGGCGGCATCGCCAACTTCACCAACGTGGCCAGCACGTT CAAGGGCGTGATCCGGGCGCTGCGCGACTACGCGACGCAGCTGAAGGAGCACAACGTGCAGATCTGGGTGCGCCG GGCCGGCCCCAACTACCAGGAGGGCCTGAAGAACATGAAGGCGGCGACGCAGGAGATGGGCCTCGACGCCAAGAT CTTCGGCCCGGAGATGCACGTGTCGGGCATCGTGCCCCTGGCCCTGGTGCCGGGCAAGTGGGAGGAGAGCAAGGC GGAGGAGTTTAGGGGCTAG |