© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|11255 |
| Gene name | |
| Location | Contig_994:4086..5268 |
| Strand | - |
| Gene length (bp) | 1182 |
| Transcript length (bp) | 1065 |
| Coding sequence length (bp) | 1065 |
| Protein length (aa) | 355 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00775 | Dioxygenase_C | Dioxygenase | 4.0E-11 | 130 | 227 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008199 | ferric iron binding | Yes |
| GO:0003824 | catalytic activity | Yes |
| GO:0006725 | cellular aromatic compound metabolic process | Yes |
| GO:0008152 | metabolic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0009987 | cellular process | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0005506 | iron ion binding | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0008150 | biological_process | No |
| GO:0043169 | cation binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1156 | 0.0469 | 0.9309 | 0.087 | 0.0806 | 0.0098 | 0.4269 | 0.3613 | 0.2143 | 0.0028 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.997109 |
| Orthofinder run ID | 4 |
| Orthogroup | 690 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|11255 MAKLSVLTALLGLLCAGVVGHPKTAEGKRAMLEAHGLVAAHSRRALGRCADSAEAVALGERAVARRAAQADALRR ERGIKTPLVRRAERSAFDKWAAVSHDASSRGYGLDTPMGSLFGCNTSAALVPETIIGPYFVEGERIRSDLADGQA GVRVHLDYQFIDINTCRPVPGLLVDVWHANATGVYSGVTARGQGGLRTTHGRGVQRTDDDGVVQFDTVFPGHYAG RTNHFHVMSTGGATVLPNGTYQGGTAQHIGQTYFDDDLIRAVEAVEPYSRNKQPHMSNADDDFTADEATADADPF MNYVYLGESPADGLLMWMAIGIDPDADYNDKKHAAAHWYPKGGVDLSHRRHRSG* |
| Coding | >Hirsu2|11255 ATGGCCAAGCTATCCGTCTTGACCGCCCTCCTCGGCCTCTTGTGCGCCGGCGTCGTCGGGCACCCCAAGACGGCC GAGGGCAAACGGGCGATGCTCGAGGCCCACGGCCTGGTGGCGGCGCACTCGCGGCGCGCCCTCGGCCGGTGCGCC GACTCGGCGGAGGCGGTGGCGCTCGGGGAGCGTGCCGTCGCGCGGCGGGCCGCCCAGGCGGATGCCCTCCGGCGG GAGCGAGGCATCAAGACCCCGCTCGTGCGGCGGGCGGAGCGGAGCGCCTTCGACAAGTGGGCGGCGGTGTCGCAC GACGCCTCGTCGCGCGGCTACGGGCTCGATACGCCGATGGGCAGCCTGTTCGGCTGCAACACCAGCGCGGCGCTC GTGCCCGAGACCATCATCGGCCCCTACTTCGTCGAGGGCGAGCGGATCCGCAGCGACCTGGCCGACGGGCAGGCC GGCGTGCGCGTCCACCTCGACTACCAGTTCATCGACATCAACACGTGCCGGCCCGTGCCCGGGCTGCTGGTCGAC GTCTGGCACGCCAACGCGACCGGCGTCTACTCGGGCGTCACGGCCCGCGGCCAGGGCGGCCTGCGCACCACCCAC GGCCGCGGCGTGCAGCGGACCGACGACGACGGCGTCGTCCAGTTCGACACCGTCTTCCCGGGCCACTACGCCGGC CGCACCAACCACTTCCACGTCATGTCCACCGGCGGCGCCACCGTCCTGCCCAACGGCACCTACCAAGGCGGCACC GCCCAGCACATCGGCCAGACCTACTTCGACGACGACCTCATCCGCGCCGTCGAGGCCGTCGAGCCCTACAGCCGG AACAAGCAGCCGCACATGTCCAACGCCGACGACGACTTCACCGCCGACGAGGCCACCGCCGACGCCGACCCCTTC ATGAATTACGTCTACCTCGGCGAGAGCCCGGCCGACGGGCTGCTCATGTGGATGGCCATTGGCATCGACCCTGAC GCCGACTACAACGACAAGAAGCACGCGGCCGCCCACTGGTATCCCAAGGGTGGCGTCGATCTGTCCCACCGCCGA CATCGGTCCGGGTAG |
| Transcript | >Hirsu2|11255 ATGGCCAAGCTATCCGTCTTGACCGCCCTCCTCGGCCTCTTGTGCGCCGGCGTCGTCGGGCACCCCAAGACGGCC GAGGGCAAACGGGCGATGCTCGAGGCCCACGGCCTGGTGGCGGCGCACTCGCGGCGCGCCCTCGGCCGGTGCGCC GACTCGGCGGAGGCGGTGGCGCTCGGGGAGCGTGCCGTCGCGCGGCGGGCCGCCCAGGCGGATGCCCTCCGGCGG GAGCGAGGCATCAAGACCCCGCTCGTGCGGCGGGCGGAGCGGAGCGCCTTCGACAAGTGGGCGGCGGTGTCGCAC GACGCCTCGTCGCGCGGCTACGGGCTCGATACGCCGATGGGCAGCCTGTTCGGCTGCAACACCAGCGCGGCGCTC GTGCCCGAGACCATCATCGGCCCCTACTTCGTCGAGGGCGAGCGGATCCGCAGCGACCTGGCCGACGGGCAGGCC GGCGTGCGCGTCCACCTCGACTACCAGTTCATCGACATCAACACGTGCCGGCCCGTGCCCGGGCTGCTGGTCGAC GTCTGGCACGCCAACGCGACCGGCGTCTACTCGGGCGTCACGGCCCGCGGCCAGGGCGGCCTGCGCACCACCCAC GGCCGCGGCGTGCAGCGGACCGACGACGACGGCGTCGTCCAGTTCGACACCGTCTTCCCGGGCCACTACGCCGGC CGCACCAACCACTTCCACGTCATGTCCACCGGCGGCGCCACCGTCCTGCCCAACGGCACCTACCAAGGCGGCACC GCCCAGCACATCGGCCAGACCTACTTCGACGACGACCTCATCCGCGCCGTCGAGGCCGTCGAGCCCTACAGCCGG AACAAGCAGCCGCACATGTCCAACGCCGACGACGACTTCACCGCCGACGAGGCCACCGCCGACGCCGACCCCTTC ATGAATTACGTCTACCTCGGCGAGAGCCCGGCCGACGGGCTGCTCATGTGGATGGCCATTGGCATCGACCCTGAC GCCGACTACAACGACAAGAAGCACGCGGCCGCCCACTGGTATCCCAAGGGTGGCGTCGATCTGTCCCACCGCCGA CATCGGTCCGGGTAG |
| Gene | >Hirsu2|11255 ATGGCCAAGCTATCCGTCTTGACCGCCCTCCTCGGCCTCTTGTGCGCCGGCGTCGTCGGGCACCCCAAGACGGCC GAGGGCAAACGGGCGATGCTCGAGGCCCACGGCCTGGTGGCGGCGCACTCGCGGCGCGCCCTCGGCCGGTGCGCC GACTCGGCGGAGGCGGTGGCGCTCGGGGAGCGTGCCGTCGCGCGGCGGGCCGCCCAGGCGGATGCCCTCCGGCGG GAGCGAGGCATCAAGACCCGTATGCAACCTCCCACCCCTCACCCCTCCCCTTATCCCCCGTCTCAGCCTCGGGGC CGGCCATGTTCCTCCTGAGGATGCCGGCGGTTGTGCGGCTGACACCGGTGGCGGCGGGCAGCGCTCGTGCGGCGG GCGGAGCGGAGCGCCTTCGACAAGTGGGCGGCGGTGTCGCACGACGCCTCGTCGCGCGGCTACGGGCTCGATACG CCGATGGGCAGCCTGTTCGGCTGCAACACCAGCGCGGCGCTCGTGCCCGAGACCATCATCGGCCCCTACTTCGTC GAGGGCGAGCGGATCCGCAGCGACCTGGCCGACGGGCAGGCCGGCGTGCGCGTCCACCTCGACTACCAGTTCATC GACATCAACACGTGCCGGCCCGTGCCCGGGCTGCTGGTCGACGTCTGGCACGCCAACGCGACCGGCGTCTACTCG GGCGTCACGGCCCGCGGCCAGGGCGGCCTGCGCACCACCCACGGCCGCGGCGTGCAGCGGACCGACGACGACGGC GTCGTCCAGTTCGACACCGTCTTCCCGGGCCACTACGCCGGCCGCACCAACCACTTCCACGTCATGTCCACCGGC GGCGCCACCGTCCTGCCCAACGGCACCTACCAAGGCGGCACCGCCCAGCACATCGGCCAGACCTACTTCGACGAC GACCTCATCCGCGCCGTCGAGGCCGTCGAGCCCTACAGCCGGAACAAGCAGCCGCACATGTCCAACGCCGACGAC GACTTCACCGCCGACGAGGCCACCGCCGACGCCGACCCCTTCATGAATTACGTCTACCTCGGCGAGAGCCCGGCC GACGGGCTGCTCATGTGGATGGCCATTGGCATCGACCCTGACGCCGACTACAACGACAAGAAGCACGCGGCCGCC CACTGGTATCCCAAGGGTGGCGTCGATCTGTCCCACCGCCGACATCGGTCCGGGTAG |