© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|11253 |
| Gene name | |
| Location | Contig_994:977..1661 |
| Strand | - |
| Gene length (bp) | 684 |
| Transcript length (bp) | 606 |
| Coding sequence length (bp) | 606 |
| Protein length (aa) | 202 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74903|YCS3_SCHPO | Uncharacterized calcium-binding protein C613.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC613.03 PE=3 SV=1 | 32 | 199 | 1.0E-28 |
| sp|P39931|SS120_YEAST | Protein SSP120 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSP120 PE=1 SV=1 | 34 | 163 | 3.0E-17 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.176 | 0.0692 | 0.5624 | 0.1358 | 0.1381 | 0.0069 | 0.5161 | 0.2495 | 0.142 | 0.0044 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 18 | 0.999748 |
| Orthofinder run ID | 4 |
| Orthogroup | 1542 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|11253 MRASLRLALAALAGLALAHGDHSQKPLVDEQADWMTKHMAEEHHMTSWDADSFFTLHDYNGDNLWQPDELQRTYG LMDPSNKDMAAERKAQVSRDLMALLDHDGDGLVSRAEWSAFLAQGKTLPDLGTGPGHHGDDEYEYEIHHWEKYHD ENTKLEDLTHPEDIEHFKKHEQEEREQEALEAMDKKAIVEENIPSKFRRRD* |
| Coding | >Hirsu2|11253 ATGCGCGCGTCCCTCCGCCTGGCCCTCGCGGCCCTCGCCGGCCTCGCCCTCGCCCACGGCGATCACTCCCAGAAG CCGCTGGTGGACGAGCAGGCCGACTGGATGACCAAGCACATGGCCGAGGAGCACCACATGACTAGCTGGGATGCC GACTCCTTCTTCACCCTGCACGACTACAACGGCGACAATCTGTGGCAGCCCGACGAGCTGCAGCGCACCTACGGC CTCATGGACCCGTCCAACAAGGATATGGCGGCCGAGCGCAAGGCGCAGGTCTCGCGAGACCTGATGGCCCTGCTG GACCACGACGGCGACGGCCTCGTCTCCCGCGCCGAGTGGTCTGCCTTCCTGGCCCAGGGCAAGACGCTGCCCGAC CTGGGCACCGGCCCCGGCCACCACGGCGACGACGAGTACGAGTACGAGATCCATCACTGGGAGAAGTACCACGAC GAGAACACCAAGCTCGAGGACCTGACCCACCCCGAGGACATCGAGCACTTCAAGAAGCACGAGCAGGAGGAGAGG GAACAGGAGGCGCTCGAGGCCATGGACAAGAAGGCCATCGTCGAGGAGAACATCCCCAGCAAGTTCCGCCGGCGG GACTAG |
| Transcript | >Hirsu2|11253 ATGCGCGCGTCCCTCCGCCTGGCCCTCGCGGCCCTCGCCGGCCTCGCCCTCGCCCACGGCGATCACTCCCAGAAG CCGCTGGTGGACGAGCAGGCCGACTGGATGACCAAGCACATGGCCGAGGAGCACCACATGACTAGCTGGGATGCC GACTCCTTCTTCACCCTGCACGACTACAACGGCGACAATCTGTGGCAGCCCGACGAGCTGCAGCGCACCTACGGC CTCATGGACCCGTCCAACAAGGATATGGCGGCCGAGCGCAAGGCGCAGGTCTCGCGAGACCTGATGGCCCTGCTG GACCACGACGGCGACGGCCTCGTCTCCCGCGCCGAGTGGTCTGCCTTCCTGGCCCAGGGCAAGACGCTGCCCGAC CTGGGCACCGGCCCCGGCCACCACGGCGACGACGAGTACGAGTACGAGATCCATCACTGGGAGAAGTACCACGAC GAGAACACCAAGCTCGAGGACCTGACCCACCCCGAGGACATCGAGCACTTCAAGAAGCACGAGCAGGAGGAGAGG GAACAGGAGGCGCTCGAGGCCATGGACAAGAAGGCCATCGTCGAGGAGAACATCCCCAGCAAGTTCCGCCGGCGG GACTAG |
| Gene | >Hirsu2|11253 ATGCGCGCGTCCCTCCGCCTGGCCCTCGCGGCCCTCGCCGGCCTCGCCCTCGCCCACGGCGATCACTCCCAGAAG CCGCTGGTGGACGAGCAGGCCGACTGGATGACCAAGCACATGGCCGGCATGTCTCACCCTCTCCCCCTTACCTCC CCTTGCCTCTCGTTCGTTCTGCGCTGACCCTCGTGTCTCTGGCCGGCAGAGGAGCACCACATGACTAGCTGGGAT GCCGACTCCTTCTTCACCCTGCACGACTACAACGGCGACAATCTGTGGCAGCCCGACGAGCTGCAGCGCACCTAC GGCCTCATGGACCCGTCCAACAAGGATATGGCGGCCGAGCGCAAGGCGCAGGTCTCGCGAGACCTGATGGCCCTG CTGGACCACGACGGCGACGGCCTCGTCTCCCGCGCCGAGTGGTCTGCCTTCCTGGCCCAGGGCAAGACGCTGCCC GACCTGGGCACCGGCCCCGGCCACCACGGCGACGACGAGTACGAGTACGAGATCCATCACTGGGAGAAGTACCAC GACGAGAACACCAAGCTCGAGGACCTGACCCACCCCGAGGACATCGAGCACTTCAAGAAGCACGAGCAGGAGGAG AGGGAACAGGAGGCGCTCGAGGCCATGGACAAGAAGGCCATCGTCGAGGAGAACATCCCCAGCAAGTTCCGCCGG CGGGACTAG |