Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|11249
Gene name
LocationContig_993:4018..4782
Strand+
Gene length (bp)764
Transcript length (bp)669
Coding sequence length (bp)669
Protein length (aa) 223

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 5.4E-26 2 174

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 1 180 1.0E-20
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 1 192 3.0E-17
sp|P25600|YCH4_YEAST Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2 14 169 3.0E-12
sp|P0C2J7|YH41B_YEAST Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-H PE=3 SV=1 11 183 4.0E-09
sp|P47024|YJ41B_YEAST Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-J PE=3 SV=3 11 183 4.0E-09
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Swissprot ID Swissprot Description Start End E-value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 1 180 1.0E-20
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 1 192 3.0E-17
sp|P25600|YCH4_YEAST Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2 14 169 3.0E-12
sp|P0C2J7|YH41B_YEAST Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-H PE=3 SV=1 11 183 4.0E-09
sp|P47024|YJ41B_YEAST Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-J PE=3 SV=3 11 183 4.0E-09
sp|Q04670|YM14B_YEAST Transposon Ty1-MR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-MR2 PE=3 SV=2 11 134 1.0E-08
sp|O13527|YA11B_YEAST Truncated transposon Ty1-A Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-A PE=3 SV=3 11 134 1.0E-08
sp|Q04711|YM11B_YEAST Transposon Ty1-ML1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-ML1 PE=3 SV=2 11 134 1.0E-08
sp|P0C2I2|YD14B_YEAST Transposon Ty1-DR5 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-DR5 PE=3 SV=1 11 134 1.0E-08
sp|Q99231|YD12B_YEAST Transposon Ty1-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-DR3 PE=1 SV=2 11 134 1.0E-08
sp|Q03434|YM12B_YEAST Transposon Ty1-ML2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-ML2 PE=3 SV=2 11 134 1.0E-08
sp|O13535|YH11B_YEAST Transposon Ty1-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-H PE=3 SV=1 11 134 1.0E-08
sp|Q03619|YE12B_YEAST Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-ER2 PE=3 SV=1 11 134 1.0E-08
sp|Q12269|YG12B_YEAST Transposon Ty1-GR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-GR2 PE=3 SV=3 11 134 1.0E-08
sp|Q03612|YE11B_YEAST Transposon Ty1-ER1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-ER1 PE=3 SV=1 11 134 1.0E-08
sp|P0C2I5|YL12B_YEAST Transposon Ty1-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-LR2 PE=3 SV=1 11 134 1.0E-08
sp|Q12414|YP11B_YEAST Transposon Ty1-PL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-PL PE=3 SV=1 11 134 1.0E-08
sp|Q03855|YD11B_YEAST Transposon Ty1-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-DR1 PE=3 SV=2 11 134 1.0E-08
sp|Q12273|YO11B_YEAST Transposon Ty1-OL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-OL PE=3 SV=1 11 134 1.0E-08
sp|P0C2J0|YP13B_YEAST Transposon Ty1-PR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-PR2 PE=3 SV=1 11 134 1.0E-08
sp|Q12088|YL11B_YEAST Transposon Ty1-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-LR1 PE=3 SV=1 1 134 1.0E-08
sp|Q12490|YB11B_YEAST Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-BL PE=1 SV=1 11 183 5.0E-08
sp|Q04214|YM13B_YEAST Transposon Ty1-MR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-MR1 PE=1 SV=2 11 183 5.0E-08
sp|P47098|YJ11B_YEAST Transposon Ty1-JR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-JR1 PE=3 SV=3 11 134 8.0E-08
sp|P0C2J1|YP14B_YEAST Transposon Ty1-PR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-PR3 PE=1 SV=1 11 134 8.0E-08
sp|Q92393|YO12B_YEAST Transposon Ty1-OR Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-OR PE=3 SV=1 11 134 8.0E-08
sp|P47100|YJ12B_YEAST Transposon Ty1-JR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-JR2 PE=3 SV=3 11 183 8.0E-08
sp|P0C2I7|YL14B_YEAST Transposon Ty1-LR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-LR4 PE=5 SV=1 11 183 8.0E-08
sp|P0C2I3|YD15B_YEAST Transposon Ty1-DR6 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-DR6 PE=3 SV=1 11 183 8.0E-08
sp|Q07793|YD13B_YEAST Transposon Ty1-DR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-DR4 PE=3 SV=2 11 183 8.0E-08
sp|P0C2I6|YL13B_YEAST Transposon Ty1-LR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-LR3 PE=3 SV=1 11 134 8.0E-08
sp|Q07163|TY1AB_YEASX Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B PE=1 SV=2 11 183 8.0E-08
sp|Q12316|YG13B_YEAST Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-GR3 PE=3 SV=3 11 134 9.0E-08
sp|Q12193|YB12B_YEAST Transposon Ty1-BR Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-BR PE=3 SV=1 11 134 9.0E-08
sp|Q12112|YN11B_YEAST Transposon Ty1-NL1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-NL1 PE=3 SV=1 11 183 9.0E-08
sp|Q12141|YG11B_YEAST Transposon Ty1-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-GR1 PE=3 SV=1 11 183 1.0E-07
sp|P0C2I9|YP12B_YEAST Transposon Ty1-PR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-PR1 PE=3 SV=1 11 183 2.0E-07
sp|Q12491|YB21B_YEAST Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-B PE=3 SV=1 1 134 3.0E-06
sp|Q07791|YD23B_YEAST Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR3 PE=3 SV=1 1 134 6.0E-06
sp|Q03494|YD22B_YEAST Transposon Ty2-DR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR2 PE=3 SV=2 1 134 6.0E-06
sp|Q12472|YD21B_YEAST Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR1 PE=1 SV=3 1 134 6.0E-06
sp|P25384|YC21B_YEAST Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-C PE=3 SV=2 1 134 6.0E-06
sp|Q12337|YG21B_YEAST Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-GR1 PE=5 SV=2 1 134 6.0E-06
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|11249
MATAARFDLDIRQFDIGNAFLYSDLNKDHPVYARLSQGYVELGFLKSGESSAMVAELDKALYGLRESPLLWHNEI
SQALKEAGIERTGEEPCVFTNGKILVLVYVDDILILSPRQEQKAVDKLVKHLQSKYELREEEFKWYLGIRVIRDR
PNQKVYLCQDAYIEKIARKFKRDGATISIPSVPISCFPLVNASGIAARKILDEPIARTSRRSQPVHPIPLLN*
Coding >Hirsu2|11249
ATGGCAACTGCAGCACGATTCGACCTCGACATTAGACAATTTGACATTGGCAATGCCTTCCTGTACAGCGACCTC
AACAAGGACCACCCCGTCTACGCCCGGCTCTCGCAGGGCTACGTAGAGCTCGGTTTCTTGAAGTCAGGGGAAAGC
TCGGCCATGGTTGCGGAACTTGACAAGGCCTTGTACGGCCTTCGAGAGTCACCATTATTGTGGCACAATGAGATT
TCCCAAGCGCTCAAAGAGGCAGGGATCGAGCGAACGGGTGAAGAACCTTGCGTCTTTACCAACGGCAAGATCCTT
GTTCTTGTCTATGTCGATGATATCCTGATTCTTAGCCCACGACAAGAACAGAAGGCAGTGGACAAGCTGGTCAAA
CATCTCCAATCCAAGTACGAACTCCGTGAGGAAGAATTCAAGTGGTATCTTGGCATCAGAGTCATCAGGGATCGA
CCGAACCAAAAGGTCTATCTGTGCCAGGATGCCTACATCGAGAAGATCGCGCGGAAGTTCAAACGAGATGGCGCG
ACAATCTCGATTCCATCGGTTCCGATCAGCTGTTTCCCACTCGTTAACGCGAGCGGCATCGCAGCTCGCAAGATT
CTTGACGAACCCATCGCCCGAACATCTCGCCGCAGCCAACCAGTGCATCCGATACCTCTACTCAACTAG
Transcript >Hirsu2|11249
ATGGCAACTGCAGCACGATTCGACCTCGACATTAGACAATTTGACATTGGCAATGCCTTCCTGTACAGCGACCTC
AACAAGGACCACCCCGTCTACGCCCGGCTCTCGCAGGGCTACGTAGAGCTCGGTTTCTTGAAGTCAGGGGAAAGC
TCGGCCATGGTTGCGGAACTTGACAAGGCCTTGTACGGCCTTCGAGAGTCACCATTATTGTGGCACAATGAGATT
TCCCAAGCGCTCAAAGAGGCAGGGATCGAGCGAACGGGTGAAGAACCTTGCGTCTTTACCAACGGCAAGATCCTT
GTTCTTGTCTATGTCGATGATATCCTGATTCTTAGCCCACGACAAGAACAGAAGGCAGTGGACAAGCTGGTCAAA
CATCTCCAATCCAAGTACGAACTCCGTGAGGAAGAATTCAAGTGGTATCTTGGCATCAGAGTCATCAGGGATCGA
CCGAACCAAAAGGTCTATCTGTGCCAGGATGCCTACATCGAGAAGATCGCGCGGAAGTTCAAACGAGATGGCGCG
ACAATCTCGATTCCATCGGTTCCGATCAGCTGTTTCCCACTCGTTAACGCGAGCGGCATCGCAGCTCGCAAGATT
CTTGACGAACCCATCGCCCGAACATCTCGCCGCAGCCAACCAGTGCATCCGATACCTCTACTCAACTAG
Gene >Hirsu2|11249
ATGGCAACTGCAGCACGATTCGACCTCGACATTAGACAATTTGACATTGGCAATGCCTTCCTGTACAGCGACCTC
AACAAGGACCACCCCGTCTACGCCCGGCTCTCGCAGGGCTACGTAGAGCTCGGTTTCTTGAAGTCAGGGGAAAGC
TCGGCCATGGTTGCGGAACTTGACAAGGCCTTGTACGGCCTTCGAGAGTCACCATTATTGTGGCACAATGAGATT
TCCCAAGCGCTCAAAGAGGCAGGGATCGAGCGAACGGGTGAAGAACCTTGCGTCTTTACCAACGGCAAGATCCTT
GTTCTTGTCTATGTCGATGATATCCTGATTCTTAGCCCACGACAAGAACAGAAGGCAGTGGACAAGCTGGTCAAA
CATCTCCAATCCAAGTACGAACTCCGTGAGGAAGAATTCAAGTGGTATCTTGGCATCAGAGTCATCAGGGATCGA
CCGAACCAAAAGGTCTATCTGTGCCAGGATGCCTACATCGAGAAGATCGCGCGGAAGTTCAAACGAGATGGCGCG
ACAATCTCGATTCCATCGGTTCCGATCAGCTGTTTCCCACTCGTTAAGTACGATGGACAGGCTACCAAGGAAGAA
ATAAAGGAGTATCAGGAACGCGTTGGGTCATTGATGTACGCTGCAGTCATGACCAGGCCCGATGTAGCGCGAGCG
GCATCGCAGCTCGCAAGATTCTTGACGAACCCATCGCCCGAACATCTCGCCGCAGCCAACCAGTGCATCCGATAC
CTCTACTCAACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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