© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|11182 |
| Gene name | |
| Location | Contig_98:9558..12006 |
| Strand | - |
| Gene length (bp) | 2448 |
| Transcript length (bp) | 1632 |
| Coding sequence length (bp) | 1632 |
| Protein length (aa) | 544 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.3839 | 0.2609 | 0.8217 | 0.1864 | 0.1122 | 0.1695 | 0.2344 | 0.1001 | 0.128 | 0.0372 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 27 | 0.998891 |
| Orthofinder run ID | 4 |
| Orthogroup | 8699 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|11182 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|11182 MSPAARPPATSLLHQFLVFATLSIASADKFNRTLLASTHRRPFRRPVSVRNTANQRLQLPQEAPWPCSLDQATIS VRNVMAYVYVCGGNITRLAVPSLELHRSEDDFWSADKAWKLAQFSAIIRSLSPSRGGSLLHFDDNLNVSGNDNED NGKKSENDNDKDKDDENSGEKKPANDYENNGEKSRNDDEIPTIATRPAGRQLGGKQLFRPVKTPRTARFLVARSA ISILIRLVYARPSYSAIAPLLSLPLSLSYSFRPSPAPSPSLSLFALCLALSPPLAAATISADRSPATPAARAIRA IGSYVVEGDSDDDDNAGPIEVDYICTPCLQDLRNTAAYRSAERPARHAGVRVLRDIAAEGRAIEVPARERANSVP GRRARITAAFNAASRRLDNLLEAARLAPAPVQDAFASPSAPVVTSPATDGALVLAHAPALAVTLGRRGGDRIVSI LWRPRPASPGGPGTFGLPGGPGIRNNKRPSIEGIANGIANGIANGIANGIANGYGKRHHERAGSRPWPRLTAGHT DECVAGPGAGRPRRKRDK* |
| Coding | >Hirsu2|11182 ATGTCACCCGCAGCGAGGCCTCCGGCAACTTCCCTTCTACATCAGTTCCTCGTCTTTGCCACTTTATCCATAGCG AGCGCCGATAAATTCAACAGAACGCTGCTGGCCTCGACGCACCGCCGGCCGTTCCGCCGCCCCGTATCAGTCCGA AACACGGCAAACCAACGTCTGCAGCTTCCGCAAGAAGCCCCCTGGCCATGTTCGTTGGACCAGGCAACAATTAGC GTGAGGAACGTCATGGCGTACGTATATGTCTGCGGCGGAAATATCACCAGACTCGCAGTCCCTTCACTTGAGCTC CACCGCAGCGAAGACGACTTTTGGAGTGCAGACAAGGCCTGGAAGCTCGCTCAATTTTCCGCAATTATTCGCAGC CTTTCGCCAAGCCGCGGAGGAAGTTTGCTTCACTTTGATGACAACTTAAATGTATCCGGGAACGACAACGAGGAT AACGGTAAAAAATCCGAAAACGATAACGATAAGGACAAGGACGATGAGAATAGCGGTGAAAAGAAACCCGCTAAC GACTATGAGAATAACGGCGAAAAATCTAGAAACGACGACGAGATACCTACTATAGCAACGCGGCCAGCTGGCCGC CAGCTGGGGGGAAAACAACTCTTCCGTCCCGTAAAAACCCCGCGCACTGCCCGCTTCCTCGTCGCGCGCTCTGCT ATCTCTATACTCATCCGCCTCGTTTACGCGCGCCCTTCCTATTCCGCGATCGCGCCGCTACTATCTCTCCCTCTC TCTCTATCTTATTCCTTCCGCCCGTCTCCCGCGCCGTCACCGTCTCTATCTCTCTTTGCTCTTTGTCTCGCCCTC TCTCCACCGCTCGCCGCTGCCACAATATCCGCCGACCGGTCCCCCGCCACCCCCGCCGCGCGCGCGATACGGGCT ATAGGCTCGTACGTAGTCGAGGGTGACTCGGACGACGACGATAACGCCGGGCCTATCGAGGTCGACTATATATGC ACGCCGTGCTTGCAGGACCTCCGAAACACAGCTGCGTACCGGTCCGCGGAGCGGCCTGCCAGGCATGCTGGGGTG CGCGTCCTACGGGATATAGCGGCCGAAGGCCGCGCCATCGAGGTCCCCGCCCGCGAGCGGGCTAATAGCGTGCCG GGCCGCCGCGCTCGAATAACGGCGGCGTTCAACGCCGCCTCGCGCCGGCTGGACAACCTGCTCGAAGCCGCTCGT CTAGCGCCCGCCCCCGTGCAGGACGCTTTCGCCTCTCCCTCCGCGCCCGTCGTCACCAGCCCCGCGACCGACGGG GCCCTGGTCCTCGCCCATGCGCCCGCCCTCGCCGTCACCCTAGGCCGTCGCGGCGGCGATAGGATTGTATCAATA CTCTGGCGGCCTAGGCCGGCCTCCCCGGGTGGCCCGGGCACCTTCGGCCTCCCCGGCGGCCCGGGCATAAGGAAC AACAAACGCCCTTCAATTGAGGGCATCGCCAACGGCATCGCCAACGGCATCGCCAACGGCATCGCCAACGGCATC GCAAACGGCTACGGCAAACGACATCACGAACGGGCCGGATCACGGCCCTGGCCCAGATTGACCGCCGGGCACACC GACGAGTGTGTGGCCGGACCAGGCGCCGGCCGCCCTAGAAGGAAGAGAGATAAATAG |
| Transcript | >Hirsu2|11182 ATGTCACCCGCAGCGAGGCCTCCGGCAACTTCCCTTCTACATCAGTTCCTCGTCTTTGCCACTTTATCCATAGCG AGCGCCGATAAATTCAACAGAACGCTGCTGGCCTCGACGCACCGCCGGCCGTTCCGCCGCCCCGTATCAGTCCGA AACACGGCAAACCAACGTCTGCAGCTTCCGCAAGAAGCCCCCTGGCCATGTTCGTTGGACCAGGCAACAATTAGC GTGAGGAACGTCATGGCGTACGTATATGTCTGCGGCGGAAATATCACCAGACTCGCAGTCCCTTCACTTGAGCTC CACCGCAGCGAAGACGACTTTTGGAGTGCAGACAAGGCCTGGAAGCTCGCTCAATTTTCCGCAATTATTCGCAGC CTTTCGCCAAGCCGCGGAGGAAGTTTGCTTCACTTTGATGACAACTTAAATGTATCCGGGAACGACAACGAGGAT AACGGTAAAAAATCCGAAAACGATAACGATAAGGACAAGGACGATGAGAATAGCGGTGAAAAGAAACCCGCTAAC GACTATGAGAATAACGGCGAAAAATCTAGAAACGACGACGAGATACCTACTATAGCAACGCGGCCAGCTGGCCGC CAGCTGGGGGGAAAACAACTCTTCCGTCCCGTAAAAACCCCGCGCACTGCCCGCTTCCTCGTCGCGCGCTCTGCT ATCTCTATACTCATCCGCCTCGTTTACGCGCGCCCTTCCTATTCCGCGATCGCGCCGCTACTATCTCTCCCTCTC TCTCTATCTTATTCCTTCCGCCCGTCTCCCGCGCCGTCACCGTCTCTATCTCTCTTTGCTCTTTGTCTCGCCCTC TCTCCACCGCTCGCCGCTGCCACAATATCCGCCGACCGGTCCCCCGCCACCCCCGCCGCGCGCGCGATACGGGCT ATAGGCTCGTACGTAGTCGAGGGTGACTCGGACGACGACGATAACGCCGGGCCTATCGAGGTCGACTATATATGC ACGCCGTGCTTGCAGGACCTCCGAAACACAGCTGCGTACCGGTCCGCGGAGCGGCCTGCCAGGCATGCTGGGGTG CGCGTCCTACGGGATATAGCGGCCGAAGGCCGCGCCATCGAGGTCCCCGCCCGCGAGCGGGCTAATAGCGTGCCG GGCCGCCGCGCTCGAATAACGGCGGCGTTCAACGCCGCCTCGCGCCGGCTGGACAACCTGCTCGAAGCCGCTCGT CTAGCGCCCGCCCCCGTGCAGGACGCTTTCGCCTCTCCCTCCGCGCCCGTCGTCACCAGCCCCGCGACCGACGGG GCCCTGGTCCTCGCCCATGCGCCCGCCCTCGCCGTCACCCTAGGCCGTCGCGGCGGCGATAGGATTGTATCAATA CTCTGGCGGCCTAGGCCGGCCTCCCCGGGTGGCCCGGGCACCTTCGGCCTCCCCGGCGGCCCGGGCATAAGGAAC AACAAACGCCCTTCAATTGAGGGCATCGCCAACGGCATCGCCAACGGCATCGCCAACGGCATCGCCAACGGCATC GCAAACGGCTACGGCAAACGACATCACGAACGGGCCGGATCACGGCCCTGGCCCAGATTGACCGCCGGGCACACC GACGAGTGTGTGGCCGGACCAGGCGCCGGCCGCCCTAGAAGGAAGAGAGATAAATAG |
| Gene | >Hirsu2|11182 ATGTCACCCGCAGCGAGGCCTCCGGCAACTTCCCTTCTACATCAGTTCCTCGTCTTTGCCACTTTATCCATAGCG AGCGCCGATAAATTCAACAGAACGCTGCTGGCCTCGACGCACCGCCGGCCGTTCCGCCGCCCCGTATCAGTCCGA AACACGGCAAACCAACGTCTGCAGCTTCCGCAAGAAGCCCCCTGGCCATGTTCGTTGGACCAGGCAACAATTAGC GTGAGGAACGTCATGGCGTACGTATATGTCTGCGGCGGAAATATCACCAGACTCGCAGTCCCTTCACTTGAGCTC CACCGCAGCGAAGACGACTTTTGGAGTGCAGACAAGGCCTGGAAGCTCGCTCAATTTTCCGCAATTATTCGCAGC CTTTCGCCAAGCCGCGGAGGAAGTTTGCTTCACTTTGATGACGTGCGAAGCCCTGGTATCCGAATTATGTCTACG TGATTCGTGGGACAAGTTTTCTAAGAGGCATCATCTATGCAGGATCGAGCAATATTACTACAAGTATCGGACTTT CGCTTGGGTGTCGATAACCTTATCCTCTCCTATACCTCTCGTCTTCGTACGATCACCTCTTAATCTTCCTCTTAT ACTTGGCTTCCTCGCCCCGCATTATGGCTCTTATCCTGAATGCAGCCGCGAAAGAGACGGTCTTTGGGGACCTCG TGCGAACTGGATCCGGTCCTCTTCGCACGATCATCTTGTCTACGGTATAAGAGAGTAATCGCCGGCTGATGCTAA GTCTCTGCATAAACGTGCGTGCTCTTCCTTAGCGAAACGTATTCGTATATTGCTAACGTTGCTTCTTTTAGGCCG ATAAAGAACGTTTAGTTTGAATCGATATTCAGTTCCGAGTAAGAGCCAACGAAGACCTTTGTGCCGTAATTGTAA ATATACGGTAAGAACTTAAATGTATCCGGGAACGACAACGAGGATAACGGTAAAAAATCCGAAAACGATAACGAT AAGGACAAGGACGATGAGAATAGCGGTGAAAAGAAACCCGCTAACGACTATGAGAATAACGGCGAAAAATCTAGA AACGACGACGAGATACCTACTATAGCAACGCGGCCAGCTGGCCGCCAGCTGGGGGGAAAACAACTCTTCCGTCCC GTAAAAACCCCGCGCACTGCCCGCTTCCTCGTCGCGCGCTCTGCTATCTCTATACTCATCCGCCTCGTTTACGCG CGCCCTTCCTATTCCGCGATCGCGCCGCTACTATCTCTCCCTCTCTCTCTATCTTATTCCTTCCGCCCGTCTCCC GCGCCGTCACCGTCTCTATCTCTCTTTGCTCTTTGTCTCGCCCTCTCTCCACCGCTCGCCGCTGCCACAATATCC GCCGACCGGTCCCCCGCCACCCCCGCCGCGCGCGCGATACGGGCTATAGGCTCGTACGTAGTCGAGGGTGACTCG GACGACGACGATAACGCCGGGCCTATCGAGGTCGACTATATATGCACGCCGTGCTTGCAGGACCTCCGAAACACA GCTGCGTACCGGTCCGCGGAGCGGCCTGCCAGGCATGCTGGGGTCGGCGGCGCAGGTGCCTCTAGGAACGGCACC TATTTACCGCGGACCCTCGGATCCGCCGGCAGGTGCGCGTCCTACGGGATATAGCGGCCGAAGGCCGCGCCATCG AGGTCCCCGCCCGCGAGCGGGCTAATAGCGTGCCGGGCCGCCGCGCTCGAATAACGGCGGCGTTCAACGCCGCCT CGCGCCGGCTGGACAACCTGCTCGAAGCCGCTCGTCTAGCGCCCGCCCCCGTGCAGGACGCTTTCGCCTCTCCCT CCGCGCCCGTCGTCACCAGCCCCGCGACCGACGGGGCCCTGGTCCTCGCCCATGCGCCCGCCCTCGCCGTCACCC TAGGCCGTCGCGGCGGCGATAGGATTGTATCAATACTCTGTATGAAACGAACAAAAAGTCCAGATCCTACCCGCA TATAAACCTCCTCCGCGGAAGCCCAGGCAGGCAGTCATCAGGGGCAGATGATGACTCCTTCCGCCGTCTCCTGGG CATGTCGCGTCTTTGGCGGCCGCCTCTGGGATCCTGCACCTTTTGGGAAGGGCAATCCGACGCCGACGACGCGTA TATAGCCTATGTGGCCATTGTTCTGGAGATTTCGAGATAATGCCTGTTGGATCAATGATGCAGTGGCCAGGGCGG CCTAGGCCGGCCTCCCCGGGTGGCCCGGGCACCTTCGGCCTCCCCGGCGGCCCGGGCATAAGGAACAACAAACGC CCTTCAATTGAGGGCATCGCCAACGGCATCGCCAACGGCATCGCCAACGGCATCGCCAACGGCATCGCAAACGGC TACGGCAAACGACATCACGAACGGGCCGGATCACGGCCCTGGCCCAGATTGACCGCCGGGCACACCGACGAGTGT GTGGCCGGACCAGGCGCCGGCCGCCCTAGAAGGAAGAGAGATAAATAG |