© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|11176 |
| Gene name | |
| Location | Contig_979:6534..7507 |
| Strand | + |
| Gene length (bp) | 973 |
| Transcript length (bp) | 870 |
| Coding sequence length (bp) | 870 |
| Protein length (aa) | 290 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10337 | ArAE_2_N | Putative ER transporter, 6TM, N-terminal | 7.3E-06 | 84 | 161 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q07660|BRE4_YEAST | Protein BRE4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRE4 PE=1 SV=1 | 8 | 226 | 3.0E-26 |
| sp|Q75E41|BRE4_ASHGO | Protein BRE4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BRE4 PE=3 SV=2 | 8 | 249 | 4.0E-14 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 81 | 103 | 22 |
| 2 | 161 | 183 | 22 |
| 3 | 185 | 207 | 22 |
| 4 | 222 | 241 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|11176 MISDDKIDTETYGVSELRDGFFDALFVKPSTSSPEELLQHVEDTLPPEFDRVSPLAPSRILPRQWHSLRSIFRRV TRTRAGVLLLKSFTAFFVAYVLCLVPAIRDWLGRYHYIMVVSVILNHPARAFGSQLDGAALTTLGTACGLGWGAV GMLLSTATTPARAGYGGLLAMMLALFMASLALIRAFFIRFYQAIMAAGIAIVFTTLAETSGVEITWIKLFDYGIP WLFGQAIALVINCLISPDAGSRAIAYSLHASFAVMQEALVVPSQQDRRLRRRLARSFVELSQAG* |
| Coding | >Hirsu2|11176 ATGATCTCAGATGACAAGATTGACACGGAAACGTATGGCGTGTCCGAACTTCGCGACGGCTTTTTCGATGCCCTT TTCGTCAAGCCGTCGACTTCGTCTCCTGAAGAGCTGCTACAACATGTCGAGGATACGCTGCCGCCCGAGTTTGAC AGGGTCTCGCCTCTTGCCCCCAGCCGAATCCTCCCCAGGCAATGGCACTCGCTGCGGTCCATCTTCCGGCGCGTC ACGAGGACTAGGGCTGGCGTTCTGCTCCTCAAGTCCTTCACTGCCTTCTTCGTAGCCTACGTCCTATGCCTCGTC CCGGCCATCCGCGATTGGCTTGGTCGCTATCATTACATCATGGTCGTTTCTGTCATCCTCAACCACCCAGCCAGA GCATTCGGATCTCAGCTGGACGGAGCTGCCCTTACTACCCTCGGCACTGCGTGTGGACTCGGCTGGGGTGCCGTG GGCATGCTGTTGTCCACGGCGACAACCCCTGCGCGGGCCGGGTACGGAGGTTTGTTGGCCATGATGCTTGCGCTG TTCATGGCCTCGCTGGCCCTGATACGTGCCTTTTTCATCAGGTTTTATCAGGCCATCATGGCTGCCGGCATTGCC ATCGTCTTCACGACCCTGGCTGAGACTAGCGGTGTCGAGATTACTTGGATAAAGCTGTTCGACTATGGCATCCCT TGGCTTTTCGGACAGGCCATCGCTTTGGTCATCAATTGCCTCATCTCCCCCGATGCCGGATCGAGAGCCATAGCC TACTCATTGCACGCCTCTTTTGCTGTCATGCAGGAAGCCCTCGTCGTCCCCAGCCAACAGGACAGGAGGCTGCGG CGGCGTCTGGCGCGATCTTTCGTGGAGCTGTCGCAAGCCGGATGA |
| Transcript | >Hirsu2|11176 ATGATCTCAGATGACAAGATTGACACGGAAACGTATGGCGTGTCCGAACTTCGCGACGGCTTTTTCGATGCCCTT TTCGTCAAGCCGTCGACTTCGTCTCCTGAAGAGCTGCTACAACATGTCGAGGATACGCTGCCGCCCGAGTTTGAC AGGGTCTCGCCTCTTGCCCCCAGCCGAATCCTCCCCAGGCAATGGCACTCGCTGCGGTCCATCTTCCGGCGCGTC ACGAGGACTAGGGCTGGCGTTCTGCTCCTCAAGTCCTTCACTGCCTTCTTCGTAGCCTACGTCCTATGCCTCGTC CCGGCCATCCGCGATTGGCTTGGTCGCTATCATTACATCATGGTCGTTTCTGTCATCCTCAACCACCCAGCCAGA GCATTCGGATCTCAGCTGGACGGAGCTGCCCTTACTACCCTCGGCACTGCGTGTGGACTCGGCTGGGGTGCCGTG GGCATGCTGTTGTCCACGGCGACAACCCCTGCGCGGGCCGGGTACGGAGGTTTGTTGGCCATGATGCTTGCGCTG TTCATGGCCTCGCTGGCCCTGATACGTGCCTTTTTCATCAGGTTTTATCAGGCCATCATGGCTGCCGGCATTGCC ATCGTCTTCACGACCCTGGCTGAGACTAGCGGTGTCGAGATTACTTGGATAAAGCTGTTCGACTATGGCATCCCT TGGCTTTTCGGACAGGCCATCGCTTTGGTCATCAATTGCCTCATCTCCCCCGATGCCGGATCGAGAGCCATAGCC TACTCATTGCACGCCTCTTTTGCTGTCATGCAGGAAGCCCTCGTCGTCCCCAGCCAACAGGACAGGAGGCTGCGG CGGCGTCTGGCGCGATCTTTCGTGGAGCTGTCGCAAGCCGGATGA |
| Gene | >Hirsu2|11176 ATGATCTCAGATGACAAGATTGACACGGAAACGTATGGCGTGTCCGAACTTCGCGACGGCTTTTTCGATGCCCTT TTCGTCAAGCCGTCGACTTCGTCTCCTGAAGAGCTGCTACAACATGTCGAGGATACGCTGCCGCCCGAGTTTGAC AGGGTCTCGCCTCTTGCCCCCAGCCGAATCCTCCCCAGGCAATGGCACTCGCTGCGGTCCATCTTCCGGCGCGTC ACGAGGACTAGGGCTGGCGTTCTGCTCCTCAAGTCCTTCACTGCCTTCTTCGTAGCCTACGTCCTATGCCTCGTC CCGGCCATCCGCGATTGGCTTGGTCGCTATCATTACATCATGGTCGTTTCTGTCATCCTCAACCACCCAGCCAGA GCATTCGGATCTCAGCTGGACGGAGCTGCCCTTACTACCCTCGGCACTGCGTGTGGACTCGGCTGGGGTGCCGTG GGCATGCTGTTGTCCACGGCGACAACCCCTGCGCGGGCCGGGTACGGAGGTTTGTTGGCCATGATGCTTGCGCTG TTCATGGCCTCGCTGGCCCTGATACGTGCCTTTTTCATCAGGTTTTATCAGGCCATCATGGCTGCCGGCATTGCC ATCGTCTTCACGACCCTGGCTGAGACTAGCGGTGTCGAGATTACTTGGATAAAGCTGTTCGACTATGGCATCCCT TGGCTTTTCGGACAGGCCATCGCTTTGGTCATCAATTGCCTCATCTCCCCCGATGCCGGATCGAGAGCCATAGCC TACTCATTGCACGCCTCTTTTGCTGTCATGCAGGTTTGTACTGTGACCTTTCCACTCGCGAGTGTCTGACGTCGC TGATTCAGCGCCATCAGGAAGCCCTCGTCGTCCCCAGCCAACAGGACAGGAGGCTGCGGCGGCGTCTGGCGCGAT CTTTCGTGGAGCTGTCGCAAGTATGTCGTGACATGAGAATCGATATCACGATAACACGATTCAGGCCGGATGA |