© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1112 |
| Gene name | |
| Location | Contig_1233:4565..5536 |
| Strand | - |
| Gene length (bp) | 971 |
| Transcript length (bp) | 918 |
| Coding sequence length (bp) | 918 |
| Protein length (aa) | 306 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02045 | CBFB_NFYA | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 4.1E-28 | 211 | 266 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P24488|HAP2_SCHPO | Transcriptional activator hap2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hap2 PE=3 SV=1 | 212 | 304 | 6.0E-28 |
| sp|P06774|HAP2_YEAST | Transcriptional activator HAP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HAP2 PE=1 SV=1 | 198 | 281 | 6.0E-27 |
| sp|P53768|HAP2_KLULA | Transcriptional activator HAP2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=HAP2 PE=3 SV=1 | 209 | 283 | 2.0E-24 |
| sp|Q84JP1|NFYA7_ARATH | Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1 | 202 | 301 | 2.0E-22 |
| sp|Q9LNP6|NFYA8_ARATH | Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2 | 182 | 272 | 2.0E-20 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P24488|HAP2_SCHPO | Transcriptional activator hap2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hap2 PE=3 SV=1 | 212 | 304 | 6.0E-28 |
| sp|P06774|HAP2_YEAST | Transcriptional activator HAP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HAP2 PE=1 SV=1 | 198 | 281 | 6.0E-27 |
| sp|P53768|HAP2_KLULA | Transcriptional activator HAP2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=HAP2 PE=3 SV=1 | 209 | 283 | 2.0E-24 |
| sp|Q84JP1|NFYA7_ARATH | Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1 | 202 | 301 | 2.0E-22 |
| sp|Q9LNP6|NFYA8_ARATH | Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2 | 182 | 272 | 2.0E-20 |
| sp|Q8VY64|NFYA4_ARATH | Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1 | 194 | 295 | 8.0E-19 |
| sp|P23708|NFYA_MOUSE | Nuclear transcription factor Y subunit alpha OS=Mus musculus GN=Nfya PE=1 SV=2 | 208 | 271 | 1.0E-18 |
| sp|Q9M9X4|NFYA2_ARATH | Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1 | 208 | 290 | 1.0E-18 |
| sp|P23511|NFYA_HUMAN | Nuclear transcription factor Y subunit alpha OS=Homo sapiens GN=NFYA PE=1 SV=2 | 208 | 271 | 1.0E-18 |
| sp|P18576|NFYA_RAT | Nuclear transcription factor Y subunit alpha OS=Rattus norvegicus GN=Nfya PE=1 SV=1 | 208 | 271 | 2.0E-18 |
| sp|Q5E9S2|NFYA_BOVIN | Nuclear transcription factor Y subunit alpha OS=Bos taurus GN=NFYA PE=2 SV=1 | 208 | 271 | 2.0E-18 |
| sp|Q9SYH4|NFYA5_ARATH | Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1 | 202 | 272 | 4.0E-18 |
| sp|Q93ZH2|NFYA3_ARATH | Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2 | 176 | 272 | 5.0E-18 |
| sp|Q54S29|NFYA_DICDI | Nuclear transcription factor Y subunit alpha OS=Dictyostelium discoideum GN=nfyA PE=3 SV=1 | 209 | 276 | 1.0E-16 |
| sp|Q9LXV5|NFYA1_ARATH | Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1 | 202 | 305 | 2.0E-16 |
| sp|Q945M9|NFYA9_ARATH | Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1 | 182 | 266 | 2.0E-16 |
| sp|Q9LVJ7|NFYA6_ARATH | Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1 | 202 | 271 | 5.0E-16 |
| sp|Q8LFU0|NFYAA_ARATH | Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2 | 208 | 294 | 1.0E-15 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0003700 | DNA-binding transcription factor activity | Yes |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0140110 | transcription regulator activity | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0065007 | biological regulation | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0080090 | regulation of primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 65 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| CCAAT-binding TF |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1112 MMEYAQYPQQQQQNTHSGYAGSAASAGITSPTNHSVTQHAVHSSPLLNSQPPPPPPPQQQQQPPPPQPQQPNQHQ GHGMYQPQYGVPQQGMQQVPYGMPGIQAAAMAATAAASGSNYPYMHSDPSIGQTSPRMAGDSSKKDTRQSPRINS MSQIPGRRMSQVTSPGVPSGPAMMNHGGPRPGVAPPQIPPGQAMQHPQSPEMPTGAAEESPLYVNAKQFHRILKR RVARQRLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADEVTALEKENKGEDANKTEGADAAAAKAADS ADKHQ* |
| Coding | >Hirsu2|1112 ATGATGGAATACGCGCAATATCCACAGCAGCAGCAGCAGAACACACATTCGGGTTACGCCGGCTCGGCCGCAAGC GCCGGTATCACGTCGCCCACCAACCACAGCGTCACCCAGCACGCCGTGCACTCGTCGCCGCTCCTCAACTCGCAG CCGCCGCCGCCACCGCCGCCCCAGCAGCAGCAGCAACCGCCGCCGCCGCAACCACAGCAGCCGAACCAACACCAG GGCCACGGCATGTACCAGCCGCAGTACGGCGTGCCCCAGCAGGGCATGCAGCAGGTCCCCTACGGGATGCCGGGC ATCCAGGCGGCCGCAATGGCCGCCACGGCCGCCGCCTCCGGCTCCAACTACCCCTACATGCACTCGGACCCCAGC ATCGGCCAGACGTCGCCCAGGATGGCCGGCGACAGCTCCAAGAAGGACACGCGCCAGTCGCCCCGGATAAACAGC ATGTCGCAAATACCCGGGCGGCGCATGAGCCAAGTGACGAGCCCCGGCGTGCCCAGCGGCCCGGCCATGATGAAC CACGGCGGGCCGCGCCCCGGCGTCGCGCCCCCGCAGATCCCGCCCGGCCAGGCCATGCAGCACCCCCAATCGCCC GAGATGCCGACCGGCGCGGCCGAGGAGTCGCCCCTGTACGTCAATGCGAAGCAGTTCCATCGGATCCTCAAGCGG AGAGTGGCGCGCCAACGGCTGGAGGAGCAGCTGCGGCTGACGTCCAAGGGCCGGAAGCCCTACCTCCATGAGTCG CGCCACAACCATGCCATGCGCCGGCCTCGCGGCCCGGGCGGCCGCTTCCTGACGGCCGACGAGGTGACGGCGCTG GAGAAGGAGAACAAGGGCGAGGACGCGAACAAGACGGAGGGCGCAGACGCAGCCGCCGCCAAGGCCGCGGACTCC GCAGACAAGCACCAATAG |
| Transcript | >Hirsu2|1112 ATGATGGAATACGCGCAATATCCACAGCAGCAGCAGCAGAACACACATTCGGGTTACGCCGGCTCGGCCGCAAGC GCCGGTATCACGTCGCCCACCAACCACAGCGTCACCCAGCACGCCGTGCACTCGTCGCCGCTCCTCAACTCGCAG CCGCCGCCGCCACCGCCGCCCCAGCAGCAGCAGCAACCGCCGCCGCCGCAACCACAGCAGCCGAACCAACACCAG GGCCACGGCATGTACCAGCCGCAGTACGGCGTGCCCCAGCAGGGCATGCAGCAGGTCCCCTACGGGATGCCGGGC ATCCAGGCGGCCGCAATGGCCGCCACGGCCGCCGCCTCCGGCTCCAACTACCCCTACATGCACTCGGACCCCAGC ATCGGCCAGACGTCGCCCAGGATGGCCGGCGACAGCTCCAAGAAGGACACGCGCCAGTCGCCCCGGATAAACAGC ATGTCGCAAATACCCGGGCGGCGCATGAGCCAAGTGACGAGCCCCGGCGTGCCCAGCGGCCCGGCCATGATGAAC CACGGCGGGCCGCGCCCCGGCGTCGCGCCCCCGCAGATCCCGCCCGGCCAGGCCATGCAGCACCCCCAATCGCCC GAGATGCCGACCGGCGCGGCCGAGGAGTCGCCCCTGTACGTCAATGCGAAGCAGTTCCATCGGATCCTCAAGCGG AGAGTGGCGCGCCAACGGCTGGAGGAGCAGCTGCGGCTGACGTCCAAGGGCCGGAAGCCCTACCTCCATGAGTCG CGCCACAACCATGCCATGCGCCGGCCTCGCGGCCCGGGCGGCCGCTTCCTGACGGCCGACGAGGTGACGGCGCTG GAGAAGGAGAACAAGGGCGAGGACGCGAACAAGACGGAGGGCGCAGACGCAGCCGCCGCCAAGGCCGCGGACTCC GCAGACAAGCACCAATAG |
| Gene | >Hirsu2|1112 ATGATGGAATACGCGCAATATCCACAGCAGCAGCAGCAGAACACACATTCGGGTTACGCCGGCTCGGCCGCAAGC GCCGGTATCACGTCGCCCACCAACCACAGCGTCACCCAGCACGCCGTGCACTCGTCGCCGCTCCTCAACTCGCAG CCGCCGCCGCCACCGCCGCCCCAGCAGCAGCAGCAACCGCCGCCGCCGCAACCACAGCAGCCGAACCAACACCAG GGCCACGGCATGTACCAGCCGCAGTACGGCGTGCCCCAGCAGGGCATGCAGCAGGTCCCCTACGGGATGCCGGGC ATCCAGGCGGCCGCAATGGCCGCCACGGCCGCCGCCTCCGGCTCCAACTACCCCTACATGCACTCGGACCCCAGC ATCGGCCAGACGTCGCCCAGGATGGCCGGCGACAGCTCCAAGAAGGACACGCGCCAGTCGCCCCGGATAAACAGC ATGTCGCAAATACCCGGGCGGCGCATGAGCCAAGTGACGAGCCCCGGCGTGCCCAGCGGCCCGGCCATGATGAAC CACGGCGGGCCGCGCCCCGGCGTCGCGCCCCCGCAGATCCCGCCCGGCCAGGCCATGCAGCACCCCCAATCGCCC GAGATGCCGACCGGCGCGGCCGAGGAGTCGCCCCTGTACGTCAATGCGAAGCAGTTCCATCGGATCCTCAAGCGG AGAGTGGCGCGCCAACGGCTGGAGGAGCAGCTGCGGCTGACGTCCAAGGGCCGGAAGCCCTACCTCCATGAGTCG CGCCACAACCATGCCATGCGCCGGCCTCGCGGCCCGGGCGGCCGCTTCCTGACGGCCGACGAGGTGACGGCGCTG GAGAAGGAGAACAAGGGCGAGGACGCGAACAAGACGGAGGGCGCAGACGCAGCCGCCGCCAAGGCCGCGGACTCC GCAGGTACGAAGCGCAAGTCCGAAGCCGCGTCGGGGTCTCCTAATAAGAAGTCCAAGACAAGCACCAATAG |