© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|11104 |
| Gene name | |
| Location | Contig_962:4303..4660 |
| Strand | - |
| Gene length (bp) | 357 |
| Transcript length (bp) | 357 |
| Coding sequence length (bp) | 357 |
| Protein length (aa) | 119 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular|Cell membrane | 0.0875 | 0.0652 | 0.7195 | 0.554 | 0.0574 | 0.0038 | 0.2985 | 0.1883 | 0.1328 | 0.0024 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 17 | 0.999678 |
| Orthofinder run ID | 4 |
| Orthogroup | 8675 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|11104 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|11104 MLLSRMMLAALPALALAQPQYQSPPPPTSAATAEASTMTQTSTTMLTKTVTLARVQTVTSSHNGTAPTAVGTASL FTPPAAVPTTKAGSVPTVNAAGSLDAPRVAALALAGVLALALL* |
| Coding | >Hirsu2|11104 ATGCTGCTGTCCCGCATGATGCTCGCCGCCCTGCCGGCGCTCGCGCTTGCGCAGCCGCAGTACCAGTCGCCGCCG CCGCCCACGTCGGCCGCCACCGCCGAGGCATCGACCATGACGCAGACGTCGACGACGATGCTGACCAAGACCGTC ACCCTCGCCCGCGTCCAGACCGTCACGTCGAGCCACAACGGCACCGCGCCCACCGCCGTCGGCACCGCCTCGCTC TTCACCCCGCCTGCCGCCGTGCCGACGACCAAGGCCGGCTCCGTCCCGACGGTCAACGCCGCCGGCTCGCTCGAC GCCCCGCGCGTCGCCGCCCTCGCCCTCGCCGGCGTCCTCGCCCTCGCCCTCTTGTAG |
| Transcript | >Hirsu2|11104 ATGCTGCTGTCCCGCATGATGCTCGCCGCCCTGCCGGCGCTCGCGCTTGCGCAGCCGCAGTACCAGTCGCCGCCG CCGCCCACGTCGGCCGCCACCGCCGAGGCATCGACCATGACGCAGACGTCGACGACGATGCTGACCAAGACCGTC ACCCTCGCCCGCGTCCAGACCGTCACGTCGAGCCACAACGGCACCGCGCCCACCGCCGTCGGCACCGCCTCGCTC TTCACCCCGCCTGCCGCCGTGCCGACGACCAAGGCCGGCTCCGTCCCGACGGTCAACGCCGCCGGCTCGCTCGAC GCCCCGCGCGTCGCCGCCCTCGCCCTCGCCGGCGTCCTCGCCCTCGCCCTCTTGTAG |
| Gene | >Hirsu2|11104 ATGCTGCTGTCCCGCATGATGCTCGCCGCCCTGCCGGCGCTCGCGCTTGCGCAGCCGCAGTACCAGTCGCCGCCG CCGCCCACGTCGGCCGCCACCGCCGAGGCATCGACCATGACGCAGACGTCGACGACGATGCTGACCAAGACCGTC ACCCTCGCCCGCGTCCAGACCGTCACGTCGAGCCACAACGGCACCGCGCCCACCGCCGTCGGCACCGCCTCGCTC TTCACCCCGCCTGCCGCCGTGCCGACGACCAAGGCCGGCTCCGTCCCGACGGTCAACGCCGCCGGCTCGCTCGAC GCCCCGCGCGTCGCCGCCCTCGCCCTCGCCGGCGTCCTCGCCCTCGCCCTCTTGTAG |