© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1109 |
| Gene name | |
| Location | Contig_1232:2544..3529 |
| Strand | - |
| Gene length (bp) | 985 |
| Transcript length (bp) | 795 |
| Coding sequence length (bp) | 795 |
| Protein length (aa) | 265 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00722 | Glyco_hydro_16 | Glycosyl hydrolases family 16 | 3.7E-10 | 90 | 213 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P45797|GUB_PAEPO | Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1 | 84 | 228 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1616 | 0.0789 | 0.8491 | 0.0934 | 0.1094 | 0.086 | 0.4094 | 0.3203 | 0.222 | 0.0123 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 18 | 0.581846 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| GH16_23 | 5.1E-87 | 73 | 253 |
| Orthofinder run ID | 4 |
| Orthogroup | 4869 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1109 MHLLRWSLVFAPRLVASLCAVETDFTKTGDVLDERDWVRQQFNVSAKAGRGRYGKTFSVSNISPHGSARLGVAEQ GIELRVNGAPKNDAVPGAEMDSARVDMHWGSYRAGLKLTAVRGTCAAFFWYFNDTQEIDMEFLSQLYDAGRQLYP VNLVVQSRKSMEAGYDASRTETFRRVNLSFDPTAGFHEYRFDYLPGRVVFYADSVKLAVMQGEEIPTNGGHLILQ HWSNGDPMWSGGPPTQDALLLVSYVKAYFNSSQEDGSGQ* |
| Coding | >Hirsu2|1109 ATGCATTTGCTTCGCTGGTCACTGGTGTTTGCCCCGCGCCTCGTGGCGTCGCTCTGCGCGGTCGAAACCGACTTC ACCAAGACGGGAGATGTCCTGGACGAGCGAGATTGGGTTCGCCAGCAGTTCAACGTCTCGGCCAAGGCTGGCCGT GGAAGGTATGGCAAGACGTTCAGCGTCAGTAACATATCGCCCCATGGTTCGGCACGGCTTGGCGTGGCCGAACAG GGAATTGAGCTGCGTGTCAACGGCGCTCCCAAGAACGATGCGGTGCCGGGGGCCGAGATGGATTCTGCGAGGGTG GACATGCACTGGGGATCGTATCGTGCCGGACTGAAACTGACAGCAGTCCGCGGCACATGCGCTGCCTTCTTCTGG TACTTCAACGACACGCAAGAGATCGACATGGAATTTCTTTCCCAGCTCTATGATGCCGGCCGTCAACTTTACCCG GTCAACCTGGTGGTGCAGTCGAGGAAGTCCATGGAGGCCGGGTACGATGCCAGCAGAACGGAGACATTCAGACGC GTCAACCTCTCATTTGATCCGACAGCCGGCTTCCACGAGTACCGATTCGACTACTTGCCAGGCCGCGTCGTCTTT TATGCCGACAGCGTCAAGCTGGCCGTGATGCAGGGCGAGGAGATTCCCACGAACGGTGGCCATCTCATTCTCCAG CACTGGAGCAACGGAGATCCAATGTGGTCAGGCGGCCCCCCGACACAGGACGCGCTGCTCCTCGTCAGTTATGTC AAGGCTTACTTCAACTCATCCCAAGAGGACGGCTCGGGCCAGTAA |
| Transcript | >Hirsu2|1109 ATGCATTTGCTTCGCTGGTCACTGGTGTTTGCCCCGCGCCTCGTGGCGTCGCTCTGCGCGGTCGAAACCGACTTC ACCAAGACGGGAGATGTCCTGGACGAGCGAGATTGGGTTCGCCAGCAGTTCAACGTCTCGGCCAAGGCTGGCCGT GGAAGGTATGGCAAGACGTTCAGCGTCAGTAACATATCGCCCCATGGTTCGGCACGGCTTGGCGTGGCCGAACAG GGAATTGAGCTGCGTGTCAACGGCGCTCCCAAGAACGATGCGGTGCCGGGGGCCGAGATGGATTCTGCGAGGGTG GACATGCACTGGGGATCGTATCGTGCCGGACTGAAACTGACAGCAGTCCGCGGCACATGCGCTGCCTTCTTCTGG TACTTCAACGACACGCAAGAGATCGACATGGAATTTCTTTCCCAGCTCTATGATGCCGGCCGTCAACTTTACCCG GTCAACCTGGTGGTGCAGTCGAGGAAGTCCATGGAGGCCGGGTACGATGCCAGCAGAACGGAGACATTCAGACGC GTCAACCTCTCATTTGATCCGACAGCCGGCTTCCACGAGTACCGATTCGACTACTTGCCAGGCCGCGTCGTCTTT TATGCCGACAGCGTCAAGCTGGCCGTGATGCAGGGCGAGGAGATTCCCACGAACGGTGGCCATCTCATTCTCCAG CACTGGAGCAACGGAGATCCAATGTGGTCAGGCGGCCCCCCGACACAGGACGCGCTGCTCCTCGTCAGTTATGTC AAGGCTTACTTCAACTCATCCCAAGAGGACGGCTCGGGCCAGTAA |
| Gene | >Hirsu2|1109 ATGCATTTGCTTCGCTGGTCACTGGTGTTTGCCCCGCGCCTCGTGGCGTCGCTCTGTGAGTGCGGGTTCGCGGTA GCATCACAAGGAGCGCGCGAAGGGGATAGTCCATTGCTGTTCACAGGCGCGGTCGAAACCGACTTCACCAAGACG GGAGATGTCCTGGACGAGCGAGATTGGGTTCGCCAGCAGTTCAACGTCTCGGCCAAGGCTGGCCGTGGAAGGTAT GGCAAGACGTTCAGCGTCAGTAACATATCGCCCCATGGTTCGGCACGGCTTGGCGTGGCCGAACAGGGAATTGAG CTGCGTGTCAACGGCGCTCCCAAGAACGATGCGGTGCCGGGGGCCGAGATGGATTCTGCGAGGGTGGACATGCAC TGGGGATCGTATCGTGCCGGACTGAAACTGACAGCAGTCCGCGGCACATGCGCTGCCTTCTTCTGGGTGCGTGCT CCGCGCCTTTTTGAGTCTTGCTCCGACCAGTCCTGACGTTGGACGGCCTCTAGTACTTCAACGACACGCAAGAGA TCGACATGGAATTTCTTTCCCAGCTCTATGATGCCGGCCGTCAACTTTACCCGGTCAACCTGGTGGTGCAGTCGA GGAAGTCCATGGAGGCCGGGTACGATGCCAGCAGAACGGAGACATTCAGACGCGTCAACCTCTCATTTGATCCGA CAGCCGGCTTCCACGAGTACCGATTCGACTACTTGCCAGGCCGCGTCGTCTTTTATGCCGACAGCGTCAAGCTGG CCGTGATGCAGGGCGAGGAGATTCCCACGAACGGTGGCCATCTCATTCTCCAGCACTGGAGCAACGGAGATCCAA TGTGGTCAGGCGGCCCCCCGACACAGGACGCGCTGCTCCTCGTCAGTTATGTCAAGGCTTACTTCAACTCATCCC AAGAGGACGGCTCGGGGTGGGCGGAACGTTGCATGGGCGCTCAAAGAACGGCCGTGTGCAACATCGCAGACGTCA TAGCCAGTAA |