© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|11087 |
| Gene name | |
| Location | Contig_96:29960..30344 |
| Strand | + |
| Gene length (bp) | 384 |
| Transcript length (bp) | 330 |
| Coding sequence length (bp) | 330 |
| Protein length (aa) | 110 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0935 | 0.0459 | 0.9669 | 0.0562 | 0.0836 | 0.0117 | 0.0802 | 0.1647 | 0.0726 | 0.0036 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 14 | 0.999691 |
| Orthofinder run ID | 4 |
| Orthogroup | 6944 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|10957 |
| Ophiocordyceps subramaniannii | Hirsu2|11087 (this protein) |
| Ophiocordyceps subramaniannii | Hirsu2|9818 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|11087 MMYSVLLLIPAVMGAATPSGPLCHIYGYEIPMTACIPAAEYDARNDVAKIPDAYCPGGEGMKCCIPKKENVPKVA AWKTQSDQEFEILIQDVFHGHKENVVPTEDTEDK* |
| Coding | >Hirsu2|11087 ATGATGTACTCTGTTCTCCTCCTCATCCCTGCCGTTATGGGTGCTGCCACGCCGTCCGGCCCGCTGTGTCATATT TACGGATACGAAATTCCAATGACCGCATGCATTCCAGCTGCAGAATACGATGCACGCAATGATGTCGCCAAAATT CCGGACGCTTACTGTCCTGGCGGAGAGGGCATGAAATGCTGCATACCCAAGAAGGAAAATGTTCCGAAGGTTGCC GCGTGGAAGACGCAGTCGGACCAGGAATTTGAAATCCTCATTCAAGACGTGTTCCATGGTCACAAAGAAAATGTA GTTCCCACCGAGGATACCGAGGATAAGTAG |
| Transcript | >Hirsu2|11087 ATGATGTACTCTGTTCTCCTCCTCATCCCTGCCGTTATGGGTGCTGCCACGCCGTCCGGCCCGCTGTGTCATATT TACGGATACGAAATTCCAATGACCGCATGCATTCCAGCTGCAGAATACGATGCACGCAATGATGTCGCCAAAATT CCGGACGCTTACTGTCCTGGCGGAGAGGGCATGAAATGCTGCATACCCAAGAAGGAAAATGTTCCGAAGGTTGCC GCGTGGAAGACGCAGTCGGACCAGGAATTTGAAATCCTCATTCAAGACGTGTTCCATGGTCACAAAGAAAATGTA GTTCCCACCGAGGATACCGAGGATAAGTAG |
| Gene | >Hirsu2|11087 ATGATGTACTCTGTTCTCCTCCTCATCCCTGCCGTTATGGGTGCTGCCACGCCGTCCGGCCCGCTGTGTCATATT TACGGATACGAAATTCCAATGACCGCATGCATTCCAGCTGCAGAATACGATGCACGCAATGATGTCGCCAAAATT CCGGACGCTTACTGTCCTGGCGGAGAGGGCATGAAATGCTGCATACCCAAGAAGGAAAATGTTCCGAAGGTTGCC GCGTGGAAGACGCAGTCGGACCAGGAATTTGAAATCCTCATTCAAGACGTGTTCCATGGTCACAAAGAGTAAGTC TGCTAATAGTACCGCGGGCCTTCGCAGCTTACTGAGTTATTTTCTAGAAATGTAGTTCCCACCGAGGATACCGAG GATAAGTAG |