Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1107
Gene name
LocationContig_1231:6125..7453
Strand+
Gene length (bp)1328
Transcript length (bp)1194
Coding sequence length (bp)1194
Protein length (aa) 398

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01940 DUF92 Integral membrane protein DUF92 6.7E-85 9 376

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q0P4L9|TMM19_XENTR Transmembrane protein 19 OS=Xenopus tropicalis GN=tmem19 PE=2 SV=1 19 267 8.0E-18
sp|Q96HH6|TMM19_HUMAN Transmembrane protein 19 OS=Homo sapiens GN=TMEM19 PE=1 SV=1 4 267 2.0E-17
sp|Q5RF73|TMM19_PONAB Transmembrane protein 19 OS=Pongo abelii GN=TMEM19 PE=2 SV=1 4 267 1.0E-16
sp|Q91W52|TMM19_MOUSE Transmembrane protein 19 OS=Mus musculus GN=Tmem19 PE=1 SV=1 4 266 1.0E-16
sp|Q6IR76|TMM19_XENLA Transmembrane protein 19 OS=Xenopus laevis GN=tmem19 PE=2 SV=1 58 267 3.0E-12
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Swissprot ID Swissprot Description Start End E-value
sp|Q0P4L9|TMM19_XENTR Transmembrane protein 19 OS=Xenopus tropicalis GN=tmem19 PE=2 SV=1 19 267 8.0E-18
sp|Q96HH6|TMM19_HUMAN Transmembrane protein 19 OS=Homo sapiens GN=TMEM19 PE=1 SV=1 4 267 2.0E-17
sp|Q5RF73|TMM19_PONAB Transmembrane protein 19 OS=Pongo abelii GN=TMEM19 PE=2 SV=1 4 267 1.0E-16
sp|Q91W52|TMM19_MOUSE Transmembrane protein 19 OS=Mus musculus GN=Tmem19 PE=1 SV=1 4 266 1.0E-16
sp|Q6IR76|TMM19_XENLA Transmembrane protein 19 OS=Xenopus laevis GN=tmem19 PE=2 SV=1 58 267 3.0E-12
sp|Q6P726|TMM19_RAT Transmembrane protein 19 OS=Rattus norvegicus GN=Tmem19 PE=2 SV=2 4 266 6.0E-12
sp|Q58343|Y933_METJA Uncharacterized membrane protein MJ0933 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0933 PE=3 SV=1 129 198 1.0E-08
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0044425 membrane part No
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.5

Transmembrane Domains

Domain # Start End Length
1 39 58 19
2 183 205 22
3 231 253 22
4 367 389 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1107
MKPIFAIPLTAALVVRAWQKKSLTPAGIVAGVLTAVAHAYHPWNLPLVLLVVFFFAGTRVTHIKENVKATLTLHS
RGTSGGEGPRTHVQVFANSLMGSILSLLHAHQLRARAAAYADPEASSPSGSMCYSWGGDVLVVGIIANYAAVAAD
TFSSELGILSRSQPRLVTSPTLRKVPRGTNGGVTAEGLAAGLFGSMVVVTTAMLFLPACSSDTAPTVGGGPPWSM
TQRRLFMAFLVVWGALGSLLDSVLGGILQRSVLDVRSGKIVEGEGGNRVLVSASASQVVGGSTKRAEARAAALEG
RGGGGGGGGGQGARGSDTSAVADVEEEDEAARRGSAAGQKHRKASFGDERPSRVVANGWDLLDNNDVNFLMASTM
SIGGMALASWYWGVPINDVMRP*
Coding >Hirsu2|1107
ATGAAGCCCATCTTCGCGATCCCGTTGACGGCGGCGCTCGTCGTGCGCGCCTGGCAGAAGAAGTCGCTTACGCCG
GCCGGCATCGTCGCGGGCGTCCTGACGGCCGTCGCCCACGCATACCACCCGTGGAACCTACCGCTCGTGCTCCTC
GTCGTCTTCTTCTTCGCGGGCACGCGAGTGACGCACATCAAGGAGAATGTCAAGGCGACGCTGACGCTGCACTCG
AGAGGCACGTCGGGCGGGGAGGGGCCGAGGACACACGTGCAAGTGTTTGCAAACTCGCTGATGGGGTCGATCCTG
TCGCTGCTGCACGCGCACCAGCTCCGCGCGAGGGCGGCGGCCTACGCAGATCCCGAGGCGAGCAGCCCGTCGGGC
AGCATGTGCTACTCGTGGGGTGGCGACGTGCTCGTGGTCGGCATCATCGCCAACTACGCGGCCGTGGCGGCCGAC
ACGTTCAGCTCGGAGCTGGGGATCCTGTCGCGAAGCCAACCGCGGCTGGTGACGTCGCCGACGCTACGCAAGGTG
CCCCGGGGCACCAACGGCGGCGTGACGGCGGAGGGGCTCGCGGCCGGGCTGTTCGGGTCCATGGTGGTGGTGACG
ACAGCGATGCTGTTCCTGCCGGCCTGCAGCAGCGACACGGCACCGACGGTGGGGGGCGGCCCGCCGTGGTCGATG
ACGCAGCGCCGGCTCTTCATGGCCTTCCTCGTCGTCTGGGGCGCCCTGGGCAGCCTGCTGGACAGCGTCCTGGGC
GGCATCCTGCAGCGATCCGTCCTCGACGTCCGTTCCGGCAAGATCGTCGAGGGCGAGGGGGGCAACCGCGTGCTC
GTCTCGGCTAGCGCCAGCCAGGTCGTCGGCGGCTCGACCAAGCGTGCCGAGGCAAGGGCGGCGGCGCTCGAGGGG
CGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCAGGGGGCCAGGGGGTCGGACACGTCTGCCGTGGCCGATGTCGAG
GAGGAGGACGAGGCGGCGCGGCGGGGAAGCGCGGCGGGCCAGAAGCATCGCAAGGCCAGCTTCGGGGACGAGCGA
CCGTCGAGGGTCGTGGCGAACGGATGGGATCTATTGGACAACAACGACGTCAATTTCCTGATGGCGTCGACGATG
AGCATCGGCGGCATGGCGCTGGCCAGCTGGTACTGGGGGGTGCCCATCAACGACGTCATGAGACCCTGA
Transcript >Hirsu2|1107
ATGAAGCCCATCTTCGCGATCCCGTTGACGGCGGCGCTCGTCGTGCGCGCCTGGCAGAAGAAGTCGCTTACGCCG
GCCGGCATCGTCGCGGGCGTCCTGACGGCCGTCGCCCACGCATACCACCCGTGGAACCTACCGCTCGTGCTCCTC
GTCGTCTTCTTCTTCGCGGGCACGCGAGTGACGCACATCAAGGAGAATGTCAAGGCGACGCTGACGCTGCACTCG
AGAGGCACGTCGGGCGGGGAGGGGCCGAGGACACACGTGCAAGTGTTTGCAAACTCGCTGATGGGGTCGATCCTG
TCGCTGCTGCACGCGCACCAGCTCCGCGCGAGGGCGGCGGCCTACGCAGATCCCGAGGCGAGCAGCCCGTCGGGC
AGCATGTGCTACTCGTGGGGTGGCGACGTGCTCGTGGTCGGCATCATCGCCAACTACGCGGCCGTGGCGGCCGAC
ACGTTCAGCTCGGAGCTGGGGATCCTGTCGCGAAGCCAACCGCGGCTGGTGACGTCGCCGACGCTACGCAAGGTG
CCCCGGGGCACCAACGGCGGCGTGACGGCGGAGGGGCTCGCGGCCGGGCTGTTCGGGTCCATGGTGGTGGTGACG
ACAGCGATGCTGTTCCTGCCGGCCTGCAGCAGCGACACGGCACCGACGGTGGGGGGCGGCCCGCCGTGGTCGATG
ACGCAGCGCCGGCTCTTCATGGCCTTCCTCGTCGTCTGGGGCGCCCTGGGCAGCCTGCTGGACAGCGTCCTGGGC
GGCATCCTGCAGCGATCCGTCCTCGACGTCCGTTCCGGCAAGATCGTCGAGGGCGAGGGGGGCAACCGCGTGCTC
GTCTCGGCTAGCGCCAGCCAGGTCGTCGGCGGCTCGACCAAGCGTGCCGAGGCAAGGGCGGCGGCGCTCGAGGGG
CGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCAGGGGGCCAGGGGGTCGGACACGTCTGCCGTGGCCGATGTCGAG
GAGGAGGACGAGGCGGCGCGGCGGGGAAGCGCGGCGGGCCAGAAGCATCGCAAGGCCAGCTTCGGGGACGAGCGA
CCGTCGAGGGTCGTGGCGAACGGATGGGATCTATTGGACAACAACGACGTCAATTTCCTGATGGCGTCGACGATG
AGCATCGGCGGCATGGCGCTGGCCAGCTGGTACTGGGGGGTGCCCATCAACGACGTCATGAGACCCTGA
Gene >Hirsu2|1107
ATGAAGCCCATCTTCGCGATCCCGTTGACGGCGGCGCTCGTCGTGCGCGCCTGGCAGAAGAAGTCGCTTACGCCG
GCCGGCATCGTCGCGGGCGTCCTGACGGCCGTCGCCCACGCATACCACCCGTGGAACCTACCGCTCGTGCTCCTC
GTCGTCTTCTTCTTCGCGGGCACGCGAGTGACGCACGTATGGATTCGCCCCGGGCGCCAGGGCTGGGAGACGTCG
CTGACGCCGGCCGAGCAGATCAAGGAGAATGTCAAGGCGACGCTGACGCTGCACTCGAGAGGCACGTCGGGCGGG
GAGGGGCCGAGGACACACGTGCAAGGTATGGCCGACCGGAGAGGAGAAGACGGGGGGAGAGAGACGAGGAGCGCG
CTCTGACGACCAAGGGGAACGGCCCAGTGTTTGCAAACTCGCTGATGGGGTCGATCCTGTCGCTGCTGCACGCGC
ACCAGCTCCGCGCGAGGGCGGCGGCCTACGCAGATCCCGAGGCGAGCAGCCCGTCGGGCAGCATGTGCTACTCGT
GGGGTGGCGACGTGCTCGTGGTCGGCATCATCGCCAACTACGCGGCCGTGGCGGCCGACACGTTCAGCTCGGAGC
TGGGGATCCTGTCGCGAAGCCAACCGCGGCTGGTGACGTCGCCGACGCTACGCAAGGTGCCCCGGGGCACCAACG
GCGGCGTGACGGCGGAGGGGCTCGCGGCCGGGCTGTTCGGGTCCATGGTGGTGGTGACGACAGCGATGCTGTTCC
TGCCGGCCTGCAGCAGCGACACGGCACCGACGGTGGGGGGCGGCCCGCCGTGGTCGATGACGCAGCGCCGGCTCT
TCATGGCCTTCCTCGTCGTCTGGGGCGCCCTGGGCAGCCTGCTGGACAGCGTCCTGGGCGGCATCCTGCAGCGAT
CCGTCCTCGACGTCCGTTCCGGCAAGATCGTCGAGGGCGAGGGGGGCAACCGCGTGCTCGTCTCGGCTAGCGCCA
GCCAGGTCGTCGGCGGCTCGACCAAGCGTGCCGAGGCAAGGGCGGCGGCGCTCGAGGGGCGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCCAGGGGGCCAGGGGGTCGGACACGTCTGCCGTGGCCGATGTCGAGGAGGAGGACGAGGCGG
CGCGGCGGGGAAGCGCGGCGGGCCAGAAGCATCGCAAGGCCAGCTTCGGGGACGAGCGACCGTCGAGGGTCGTGG
CGAACGGATGGGATCTATTGGACAACAACGACGTCAATTTCCTGATGGCGTCGACGATGAGCATCGGCGGCATGG
CGCTGGCCAGCTGGTACTGGGGGGTGCCCATCAACGACGTCATGAGACCCTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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