Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|11061
Gene name
LocationContig_956:6702..7850
Strand+
Gene length (bp)1148
Transcript length (bp)957
Coding sequence length (bp)957
Protein length (aa) 319

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06772 LtrA Bacterial low temperature requirement A protein (LtrA) 1.1E-30 41 281

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 65 0.45

Transmembrane Domains

Domain # Start End Length
1 105 124 19
2 134 156 22
3 165 187 22
4 191 213 22
5 234 256 22
6 260 282 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|11061
MNCNELQQGSKGSRYLIKRPKALQWFHNGRLYKESDEERQAGRFELFLDLLYVAIVANFSDDLAENPDGFHVAKY
MLIFVPAWHLWSDMREIMNSYYNDDIVQRLTILWIMALLVLYANNARLVDSDIAALRTTAAAYVIARFTSASVFL
ISSFASFQHRTQARILAGFMFSGLLFTVPLFFEAVSLRAKAAITVAMILYSECTWALTLSPFIKRRLRLEYSTAV
DIAHEIDRLAAFEIIILGEFVYSVIVGGPAGIGLTAGYAKALCVLVIAFCLNWIYHLDSSSFTFLFLHPCSSVDT
LVLSARSCTNSRMASDGF*
Coding >Hirsu2|11061
ATGAACTGCAACGAGCTCCAACAAGGCTCCAAGGGGTCACGTTACCTCATTAAGCGTCCTAAAGCGCTGCAATGG
TTCCACAACGGCCGCCTCTACAAGGAGAGCGACGAAGAGCGGCAGGCTGGTCGATTTGAACTGTTTCTCGACTTG
CTTTATGTAGCCATCGTCGCCAACTTCAGCGACGACCTTGCGGAGAACCCGGACGGCTTCCATGTGGCCAAATAC
ATGCTCATCTTCGTCCCAGCCTGGCATCTTTGGTCAGACATGAGGGAAATCATGAATTCGTATTACAACGACGAT
ATTGTCCAACGCCTGACGATCCTCTGGATCATGGCGTTGCTTGTTCTCTACGCCAACAACGCGCGACTTGTTGAC
AGCGACATCGCCGCGCTCCGCACCACCGCTGCAGCCTATGTCATTGCTCGCTTCACGTCCGCGTCTGTCTTTCTC
ATCAGCTCATTCGCCAGCTTCCAACATCGCACCCAAGCGCGTATCCTGGCCGGCTTCATGTTTTCGGGCCTCCTT
TTCACCGTGCCACTCTTCTTCGAAGCCGTTAGCCTCCGGGCCAAGGCGGCGATAACGGTGGCCATGATACTTTAC
AGCGAATGTACCTGGGCTCTGACCCTGAGCCCGTTCATTAAGCGGCGATTGCGCCTTGAATACAGCACCGCCGTC
GATATTGCTCATGAGATCGATCGTCTCGCCGCCTTTGAGATCATAATCCTGGGCGAATTCGTATACAGTGTCATC
GTGGGCGGCCCAGCGGGCATTGGCCTTACTGCCGGCTACGCCAAGGCCCTTTGTGTGCTTGTTATAGCCTTCTGC
CTGAACTGGATCTACCATTTGGATTCTTCCTCCTTCACCTTCCTCTTTCTGCATCCCTGCTCATCGGTGGACACA
TTGGTGCTGTCAGCACGAAGCTGCACCAATTCGAGGATGGCCAGCGATGGCTTCTAG
Transcript >Hirsu2|11061
ATGAACTGCAACGAGCTCCAACAAGGCTCCAAGGGGTCACGTTACCTCATTAAGCGTCCTAAAGCGCTGCAATGG
TTCCACAACGGCCGCCTCTACAAGGAGAGCGACGAAGAGCGGCAGGCTGGTCGATTTGAACTGTTTCTCGACTTG
CTTTATGTAGCCATCGTCGCCAACTTCAGCGACGACCTTGCGGAGAACCCGGACGGCTTCCATGTGGCCAAATAC
ATGCTCATCTTCGTCCCAGCCTGGCATCTTTGGTCAGACATGAGGGAAATCATGAATTCGTATTACAACGACGAT
ATTGTCCAACGCCTGACGATCCTCTGGATCATGGCGTTGCTTGTTCTCTACGCCAACAACGCGCGACTTGTTGAC
AGCGACATCGCCGCGCTCCGCACCACCGCTGCAGCCTATGTCATTGCTCGCTTCACGTCCGCGTCTGTCTTTCTC
ATCAGCTCATTCGCCAGCTTCCAACATCGCACCCAAGCGCGTATCCTGGCCGGCTTCATGTTTTCGGGCCTCCTT
TTCACCGTGCCACTCTTCTTCGAAGCCGTTAGCCTCCGGGCCAAGGCGGCGATAACGGTGGCCATGATACTTTAC
AGCGAATGTACCTGGGCTCTGACCCTGAGCCCGTTCATTAAGCGGCGATTGCGCCTTGAATACAGCACCGCCGTC
GATATTGCTCATGAGATCGATCGTCTCGCCGCCTTTGAGATCATAATCCTGGGCGAATTCGTATACAGTGTCATC
GTGGGCGGCCCAGCGGGCATTGGCCTTACTGCCGGCTACGCCAAGGCCCTTTGTGTGCTTGTTATAGCCTTCTGC
CTGAACTGGATCTACCATTTGGATTCTTCCTCCTTCACCTTCCTCTTTCTGCATCCCTGCTCATCGGTGGACACA
TTGGTGCTGTCAGCACGAAGCTGCACCAATTCGAGGATGGCCAGCGATGGCTTCTAG
Gene >Hirsu2|11061
ATGAACTGCAACGAGCTCCAACAAGGCTCCAAGGGGTCACGTTACCTCATTAAGCGTCCTAAAGCGCTGCAATGG
TTCCACAACGGCCGCCTCTACAAGGAGAGCGACGAAGAGCGGCAGGCTGGTCGATTTGAACTGTTTCTCGACTTG
CTTTGTGAGTAAACAGAGGACGATGCCAGGCCCGTAGCTACGCCTCCCGGGTTTCATAGAAAGCCTTGGGACAGA
TGACAGAACGGAACAGCTGACTCCAGTGCCGTCGTTGTTTTTTTCTGTGACTTCACTACCAGATGTAGCCATCGT
CGCCAACTTCAGCGACGACCTTGCGGAGAACCCGGACGGCTTCCATGTGGCCAAATACATGCTCATCTTCGTCCC
AGCCTGGCATCTTTGGTCAGACATGAGGGAAATCATGAATTCGTATTACAACGACGATATTGTCCAACGCCTGAC
GATCCTCTGGATCATGGCGTTGCTTGTTCTCTACGCCAACAACGCGCGACTTGTTGACAGCGACATCGCCGCGCT
CCGCACCACCGCTGCAGCCTATGTCATTGCTCGCTTCACGTCCGCGTCTGTCTTTCTCATCAGCTCATTCGCCAG
CTTCCAACATCGCACCCAAGCGCGTATCCTGGCCGGCTTCATGTTTTCGGGCCTCCTTTTCACCGTGCCACTCTT
CTTCGAAGCCGTTAGCCTCCGGGCCAAGGCGGCGATAACGGTGGCCATGATACTTTACAGCGAATGTACCTGGGC
TCTGACCCTGAGCCCGTTCATTAAGCGGCGATTGCGCCTTGAATACAGCACCGCCGTCGATATTGCTCATGAGAT
CGATCGTCTCGCCGCCTTTGAGATCATAATCCTGGGCGAATTCGTATACAGTGTCATCGTGGGCGGCCCAGCGGG
CATTGGCCTTACTGCCGGCTACGCCAAGGCCCTTTGTGTGCTTGTTATAGCCTTCTGCCTGAACTGGATCTACGT
GAGCGGAGACGGCAGCGTGAGGTCCACGCATCCCATTCGGCGCTCGGCATGGACAGCATTTGGATTCTTCCTCCT
TCACCTTCCTCTTTCTGCATCCCTGCTCATCGGTGGACACATTGGTGCTGTCAGCACGAAGCTGCACCAATTCGA
GGATGGCCAGCGATGGCTTCTAG

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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