Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|1106
Gene name
Location	Contig_1231:4587..5532
Strand	-
Gene length (bp)	945
Transcript length (bp)	945
Coding sequence length (bp)	945
Protein length (aa)	315

Overview

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF12923	RRP7	Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain	6.6E-31	194	312
PF17799	RRM_Rrp7	Rrp7 RRM-like N-terminal domain	1.5E-13	11	175

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P25368\|RRP7_YEAST	Ribosomal RNA-processing protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP7 PE=1 SV=1	4	312	6.0E-14
sp\|O94683\|RRP7_SCHPO	Ribosomal RNA-processing protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp7 PE=3 SV=2	226	312	6.0E-13
sp\|Q9D1C9\|RRP7A_MOUSE	Ribosomal RNA-processing protein 7 homolog A OS=Mus musculus GN=Rrp7a PE=2 SV=1	205	312	3.0E-09
sp\|Q5RA17\|RRP7A_PONAB	Ribosomal RNA-processing protein 7 homolog A OS=Pongo abelii GN=RRP7A PE=2 SV=1	11	312	3.0E-08
sp\|Q23314\|RRP7_CAEEL	Ribosomal RNA-processing protein 7 homolog OS=Caenorhabditis elegans GN=ZC434.4 PE=3 SV=3	200	312	5.0E-08

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P25368\|RRP7_YEAST	Ribosomal RNA-processing protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP7 PE=1 SV=1	4	312	6.0E-14
sp\|O94683\|RRP7_SCHPO	Ribosomal RNA-processing protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp7 PE=3 SV=2	226	312	6.0E-13
sp\|Q9D1C9\|RRP7A_MOUSE	Ribosomal RNA-processing protein 7 homolog A OS=Mus musculus GN=Rrp7a PE=2 SV=1	205	312	3.0E-09
sp\|Q5RA17\|RRP7A_PONAB	Ribosomal RNA-processing protein 7 homolog A OS=Pongo abelii GN=RRP7A PE=2 SV=1	11	312	3.0E-08
sp\|Q23314\|RRP7_CAEEL	Ribosomal RNA-processing protein 7 homolog OS=Caenorhabditis elegans GN=ZC434.4 PE=3 SV=3	200	312	5.0E-08
sp\|Q9Y3A4\|RRP7A_HUMAN	Ribosomal RNA-processing protein 7 homolog A OS=Homo sapiens GN=RRP7A PE=1 SV=2	162	312	7.0E-08
sp\|Q9NSQ0\|RRP7B_HUMAN	Putative ribosomal RNA-processing protein 7 homolog B OS=Homo sapiens GN=RRP7BP PE=5 SV=1	230	312	4.0E-07

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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Nucleus	Nuclear localization signal	0.3485	0.8031	0.2409	0.0159	0.0997	0.0113	0.036	0.0055	0.0095	0.0004

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID	4
Orthogroup	1473
Change Orthofinder run

Species	Protein ID
Ophiocordyceps australis 1348a (Ghana)	OphauG2\|4532
Ophiocordyceps australis map64 (Brazil)	OphauB2\|5391
Ophiocordyceps camponoti-floridani	Ophcf2\|00763
Ophiocordyceps camponoti-rufipedis	Ophun1\|1363
Ophiocordyceps kimflemingae	Ophio5\|4457
Ophiocordyceps subramaniannii	Hirsu2\|1106 (this protein)

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|1106 MAPLEAVGDQFAILPIRIPPAPSYPQTAIHEVRVRRNAPKLPTANDSRSLFLKNVPADSTEAHFRAVFVSLVGAG RFESIAFDDETAAAPLAVDPAQATKVAAFARKRKRTDVEAADQEREMESARLPEIWTRRLHRSSGTAVALFADEK SVQLVLKAVAKLQKTRKYPVWGENLADKVPSLGGPWIASHLQLCRADKAETQKAVHAFFNVFNRKEKEASELAKR LRNEPDEDGFVTVTRGGRAAPASRNEADEAKQRMVDRQAKKKSEMKDFYRFQLRERRKHEQAALLKRFEEDKRKV VAMREKRGKFKPEA*
Coding	>Hirsu2\|1106 ATGGCACCTCTGGAGGCTGTCGGCGATCAATTCGCCATCCTCCCGATTCGCATCCCCCCCGCCCCCTCCTATCCT CAAACCGCCATCCACGAGGTCCGGGTCCGTCGAAATGCGCCGAAACTGCCGACTGCCAACGACTCCCGCAGTCTT TTCCTCAAGAACGTCCCCGCCGACAGCACGGAGGCGCACTTCAGAGCCGTCTTCGTCAGCCTCGTGGGCGCGGGT CGCTTCGAGAGCATCGCCTTTGACGACGAGACGGCAGCGGCTCCCCTTGCCGTCGATCCCGCCCAGGCCACCAAA GTCGCGGCCTTTGCGCGGAAACGCAAGAGGACCGACGTCGAAGCGGCCGACCAGGAGCGGGAAATGGAGTCTGCC CGGCTGCCGGAGATATGGACGCGCCGCCTGCACCGGAGCAGCGGCACGGCCGTGGCCCTGTTCGCCGACGAGAAG AGCGTCCAGCTCGTGCTCAAGGCCGTCGCGAAGCTTCAAAAGACGCGCAAGTACCCCGTCTGGGGCGAGAACCTG GCCGACAAGGTGCCGTCCCTGGGCGGCCCTTGGATAGCCTCACATCTGCAGCTCTGTCGGGCCGACAAGGCCGAG ACCCAGAAGGCGGTGCACGCCTTCTTTAACGTCTTCAACCGCAAGGAGAAGGAGGCCTCGGAGCTGGCCAAGAGG TTGCGCAACGAGCCGGACGAGGATGGCTTCGTCACGGTCACGCGCGGCGGCCGCGCCGCCCCGGCGAGCCGCAAC GAGGCCGACGAGGCCAAGCAGAGGATGGTGGACAGGCAGGCCAAGAAGAAGTCGGAGATGAAAGACTTCTACCGC TTCCAGCTGCGCGAGAGGCGGAAGCACGAGCAGGCTGCGCTGCTGAAGCGCTTCGAGGAGGACAAGCGCAAGGTC GTGGCCATGCGGGAGAAGAGAGGGAAATTCAAGCCCGAGGCGTGA
Transcript	>Hirsu2\|1106 ATGGCACCTCTGGAGGCTGTCGGCGATCAATTCGCCATCCTCCCGATTCGCATCCCCCCCGCCCCCTCCTATCCT CAAACCGCCATCCACGAGGTCCGGGTCCGTCGAAATGCGCCGAAACTGCCGACTGCCAACGACTCCCGCAGTCTT TTCCTCAAGAACGTCCCCGCCGACAGCACGGAGGCGCACTTCAGAGCCGTCTTCGTCAGCCTCGTGGGCGCGGGT CGCTTCGAGAGCATCGCCTTTGACGACGAGACGGCAGCGGCTCCCCTTGCCGTCGATCCCGCCCAGGCCACCAAA GTCGCGGCCTTTGCGCGGAAACGCAAGAGGACCGACGTCGAAGCGGCCGACCAGGAGCGGGAAATGGAGTCTGCC CGGCTGCCGGAGATATGGACGCGCCGCCTGCACCGGAGCAGCGGCACGGCCGTGGCCCTGTTCGCCGACGAGAAG AGCGTCCAGCTCGTGCTCAAGGCCGTCGCGAAGCTTCAAAAGACGCGCAAGTACCCCGTCTGGGGCGAGAACCTG GCCGACAAGGTGCCGTCCCTGGGCGGCCCTTGGATAGCCTCACATCTGCAGCTCTGTCGGGCCGACAAGGCCGAG ACCCAGAAGGCGGTGCACGCCTTCTTTAACGTCTTCAACCGCAAGGAGAAGGAGGCCTCGGAGCTGGCCAAGAGG TTGCGCAACGAGCCGGACGAGGATGGCTTCGTCACGGTCACGCGCGGCGGCCGCGCCGCCCCGGCGAGCCGCAAC GAGGCCGACGAGGCCAAGCAGAGGATGGTGGACAGGCAGGCCAAGAAGAAGTCGGAGATGAAAGACTTCTACCGC TTCCAGCTGCGCGAGAGGCGGAAGCACGAGCAGGCTGCGCTGCTGAAGCGCTTCGAGGAGGACAAGCGCAAGGTC GTGGCCATGCGGGAGAAGAGAGGGAAATTCAAGCCCGAGGCGTGA
Gene	>Hirsu2\|1106 ATGGCACCTCTGGAGGCTGTCGGCGATCAATTCGCCATCCTCCCGATTCGCATCCCCCCCGCCCCCTCCTATCCT CAAACCGCCATCCACGAGGTCCGGGTCCGTCGAAATGCGCCGAAACTGCCGACTGCCAACGACTCCCGCAGTCTT TTCCTCAAGAACGTCCCCGCCGACAGCACGGAGGCGCACTTCAGAGCCGTCTTCGTCAGCCTCGTGGGCGCGGGT CGCTTCGAGAGCATCGCCTTTGACGACGAGACGGCAGCGGCTCCCCTTGCCGTCGATCCCGCCCAGGCCACCAAA GTCGCGGCCTTTGCGCGGAAACGCAAGAGGACCGACGTCGAAGCGGCCGACCAGGAGCGGGAAATGGAGTCTGCC CGGCTGCCGGAGATATGGACGCGCCGCCTGCACCGGAGCAGCGGCACGGCCGTGGCCCTGTTCGCCGACGAGAAG AGCGTCCAGCTCGTGCTCAAGGCCGTCGCGAAGCTTCAAAAGACGCGCAAGTACCCCGTCTGGGGCGAGAACCTG GCCGACAAGGTGCCGTCCCTGGGCGGCCCTTGGATAGCCTCACATCTGCAGCTCTGTCGGGCCGACAAGGCCGAG ACCCAGAAGGCGGTGCACGCCTTCTTTAACGTCTTCAACCGCAAGGAGAAGGAGGCCTCGGAGCTGGCCAAGAGG TTGCGCAACGAGCCGGACGAGGATGGCTTCGTCACGGTCACGCGCGGCGGCCGCGCCGCCCCGGCGAGCCGCAAC GAGGCCGACGAGGCCAAGCAGAGGATGGTGGACAGGCAGGCCAAGAAGAAGTCGGAGATGAAAGACTTCTACCGC TTCCAGCTGCGCGAGAGGCGGAAGCACGAGCAGGCTGCGCTGCTGAAGCGCTTCGAGGAGGACAAGCGCAAGGTC GTGGCCATGCGGGAGAAGAGAGGGAAATTCAAGCCCGAGGCGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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