Protein ID | Hirsu2|1103 |
Gene name | |
Location | Contig_1231:11..559 |
Strand | - |
Gene length (bp) | 548 |
Transcript length (bp) | 366 |
Coding sequence length (bp) | 366 |
Protein length (aa) | 122 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11559 | ADIP | Afadin- and alpha -actinin-Binding | 4.3E-23 | 9 | 119 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | 0.6294 | 0.5058 | 0.1169 | 0.0926 | 0.1718 | 0.0023 | 0.0382 | 0.0713 | 0.041 | 0.0716 |
Orthofinder run ID | 4 |
Orthogroup | 1459 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1103 MIDTENLCTASQYINNQLVSRGLLRDGQAIDFAHGGGGDAQGSAANAGRIISIVNDLILRRDRDADQRESLSVAI RNLRAENVKQATDLARLADKKAEEERRADAAGAAEAALRTQLRRRG* |
Coding | >Hirsu2|1103 ATGATCGACACGGAGAACCTGTGCACGGCCTCGCAGTACATCAACAACCAGCTCGTCTCCCGGGGGCTGCTTCGC GATGGCCAGGCCATAGACTTTGCCCACGGCGGCGGCGGCGACGCACAAGGCTCGGCCGCCAACGCCGGGCGCATC ATCAGCATCGTCAACGACCTGATCCTGCGGCGCGATCGCGATGCCGACCAGCGCGAGTCGCTCTCCGTCGCCATT CGGAACCTCCGCGCCGAGAACGTCAAGCAGGCGACGGACCTGGCGCGCCTGGCGGACAAGAAGGCAGAGGAGGAG CGGCGGGCGGACGCGGCGGGCGCGGCCGAGGCGGCGCTCCGGACGCAGCTGCGGCGGCGCGGATGA |
Transcript | >Hirsu2|1103 ATGATCGACACGGAGAACCTGTGCACGGCCTCGCAGTACATCAACAACCAGCTCGTCTCCCGGGGGCTGCTTCGC GATGGCCAGGCCATAGACTTTGCCCACGGCGGCGGCGGCGACGCACAAGGCTCGGCCGCCAACGCCGGGCGCATC ATCAGCATCGTCAACGACCTGATCCTGCGGCGCGATCGCGATGCCGACCAGCGCGAGTCGCTCTCCGTCGCCATT CGGAACCTCCGCGCCGAGAACGTCAAGCAGGCGACGGACCTGGCGCGCCTGGCGGACAAGAAGGCAGAGGAGGAG CGGCGGGCGGACGCGGCGGGCGCGGCCGAGGCGGCGCTCCGGACGCAGCTGCGGCGGCGCGGATGA |
Gene | >Hirsu2|1103 ATGATCGACACGGAGAACCTGTGCACGGCCTCGCAGTACATCAACAACCAGCTCGTCTCCCGGGGGCTGCTTCGC GATGGCCAGGCCATAGACTTTGCCCACGGCGGCGGCGGCGACGCACAAGGCTCGGCCGCCAACGCCGGGCGCATC ATCAGCATCGTCAACGACCTGATCCTGCGGCGCGATGTAAGCAATCTTCCCTCCCCACCGATCCCGCACCGGGAA ACCTTGCTTCGTGCAGAGAAGAAGGATGGCAGGCGGCGAGAGAGGATGGGCGGGGGGGGGGGGCAGCAGGGGCTG ACCAGACGTTTTTCTCTTCACTGTCACGCAGCGCGATGCCGACCAGCGCGAGTCGCTCTCCGTCGCCATTCGGAA CCTCCGCGCCGAGAACGTCAAGCAGGCGACGGACCTGGCGCGCCTGGCGGACAAGAAGGCAGAGGAGGAGCGGCG GGCGGACGCGGCGGGCGCGGCCGAGGCGGCGCTCCGGACGCAGCTGCGGTCGGCCGAGGCGCAGGCGCGCAGCCT GAGGGAGGAGGCGGCGCGGATGA |