© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1102 |
| Gene name | |
| Location | Contig_1230:6712..7870 |
| Strand | - |
| Gene length (bp) | 1158 |
| Transcript length (bp) | 1092 |
| Coding sequence length (bp) | 1092 |
| Protein length (aa) | 364 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16016 | VASt | VAD1 Analog of StAR-related lipid transfer domain | 9.8E-32 | 6 | 131 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q06681|YSP2_YEAST | Membrane-anchored lipid-binding protein YSP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSP2 PE=1 SV=1 | 34 | 150 | 8.0E-27 |
| sp|Q06681|YSP2_YEAST | Membrane-anchored lipid-binding protein YSP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSP2 PE=1 SV=1 | 36 | 153 | 9.0E-25 |
| sp|O42976|YGZ7_SCHPO | Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1 | 35 | 147 | 8.0E-24 |
| sp|P38800|LAM4_YEAST | Membrane-anchored lipid-binding protein LAM4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAM4 PE=1 SV=1 | 35 | 133 | 3.0E-23 |
| sp|P38800|LAM4_YEAST | Membrane-anchored lipid-binding protein LAM4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAM4 PE=1 SV=1 | 1 | 281 | 7.0E-22 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q06681|YSP2_YEAST | Membrane-anchored lipid-binding protein YSP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSP2 PE=1 SV=1 | 34 | 150 | 8.0E-27 |
| sp|Q06681|YSP2_YEAST | Membrane-anchored lipid-binding protein YSP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSP2 PE=1 SV=1 | 36 | 153 | 9.0E-25 |
| sp|O42976|YGZ7_SCHPO | Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1 | 35 | 147 | 8.0E-24 |
| sp|P38800|LAM4_YEAST | Membrane-anchored lipid-binding protein LAM4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAM4 PE=1 SV=1 | 35 | 133 | 3.0E-23 |
| sp|P38800|LAM4_YEAST | Membrane-anchored lipid-binding protein LAM4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAM4 PE=1 SV=1 | 1 | 281 | 7.0E-22 |
| sp|Q08001|LAM6_YEAST | Membrane-anchored lipid-binding protein LAM6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAM6 PE=1 SV=1 | 39 | 164 | 4.0E-15 |
| sp|P43560|LAM5_YEAST | Membrane-anchored lipid-binding protein LAM5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAM5 PE=1 SV=2 | 39 | 136 | 9.0E-15 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 216 | 238 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1102 MFGPASVDWMARWLTGDQQKCTDLQMEDRRGLGPDNRSRNFTYVKPLNASLGPKQTKCIVAETLENMDLERAVNL SVSTQNPDVPSGNVFCVKTKYCLSWAENSCTRVQVNCTTEWTGKSWLKGPIEKGVGDGQMQYCRDLFAALKSAVS SRSRPGVPSGGAPRIKKKLKRSKALQSADGSVEGGGGLARADTKNWGPLEPVRGLAEPLLDVVRPVLTSNVMYGL LVGLLVAMWFGFGSSPTKNSASYGPEVGYYSPSRLAAYEEMWRREESELWDWLEERVGLDRLSSDASNGVGGVGG VGGKRTMAGRSVEDKLRDGQMDERDVEAAIWVTEEKLKVLKDAFGRNGRVTDRERESGRRGER* |
| Coding | >Hirsu2|1102 ATGTTCGGCCCGGCCTCGGTCGACTGGATGGCCCGGTGGCTGACGGGCGACCAGCAGAAGTGCACCGACCTGCAG ATGGAGGACCGGAGGGGCCTGGGCCCGGACAACCGGTCGCGCAACTTCACCTACGTCAAGCCGCTCAACGCGTCG CTCGGCCCCAAGCAGACCAAGTGCATCGTGGCCGAGACGCTCGAGAACATGGACCTGGAGAGGGCCGTCAACCTG AGCGTGTCGACGCAGAACCCGGACGTGCCCAGCGGCAACGTCTTTTGCGTCAAGACCAAGTACTGCCTGTCGTGG GCCGAGAACAGCTGCACCCGCGTCCAGGTCAACTGCACGACGGAGTGGACGGGCAAGAGCTGGCTGAAAGGGCCG ATCGAGAAGGGCGTCGGCGACGGGCAAATGCAGTACTGCAGGGACCTGTTCGCGGCCCTCAAGAGCGCGGTGTCG TCGAGGAGCCGGCCGGGCGTCCCGTCGGGCGGCGCGCCGAGGATCAAGAAGAAGCTGAAGCGGAGCAAGGCGCTC CAGTCGGCGGACGGCAGCGTCGAGGGCGGCGGCGGACTGGCGCGCGCCGACACGAAGAACTGGGGCCCGCTGGAG CCGGTCAGAGGGCTGGCGGAGCCGCTGCTGGACGTGGTGCGGCCGGTGCTGACGAGCAACGTCATGTACGGGCTG CTGGTGGGCCTGCTGGTGGCCATGTGGTTCGGGTTCGGCTCGTCGCCGACCAAGAACTCGGCGTCGTACGGGCCC GAGGTGGGCTACTACAGCCCGAGCCGGCTGGCGGCGTACGAGGAGATGTGGCGGCGGGAGGAGAGCGAGCTCTGG GACTGGCTGGAGGAGCGGGTCGGGCTGGACCGACTGAGCTCGGACGCGTCGAACGGCGTCGGCGGCGTCGGCGGC GTCGGCGGCAAGAGGACGATGGCGGGACGGAGCGTCGAGGACAAGCTGAGGGACGGGCAGATGGACGAGAGGGAC GTCGAGGCGGCCATCTGGGTGACGGAGGAGAAGCTCAAGGTGCTGAAGGACGCCTTTGGCCGGAACGGCCGCGTC ACGGACCGCGAGAGGGAGAGCGGGCGGAGGGGCGAGCGGTGA |
| Transcript | >Hirsu2|1102 ATGTTCGGCCCGGCCTCGGTCGACTGGATGGCCCGGTGGCTGACGGGCGACCAGCAGAAGTGCACCGACCTGCAG ATGGAGGACCGGAGGGGCCTGGGCCCGGACAACCGGTCGCGCAACTTCACCTACGTCAAGCCGCTCAACGCGTCG CTCGGCCCCAAGCAGACCAAGTGCATCGTGGCCGAGACGCTCGAGAACATGGACCTGGAGAGGGCCGTCAACCTG AGCGTGTCGACGCAGAACCCGGACGTGCCCAGCGGCAACGTCTTTTGCGTCAAGACCAAGTACTGCCTGTCGTGG GCCGAGAACAGCTGCACCCGCGTCCAGGTCAACTGCACGACGGAGTGGACGGGCAAGAGCTGGCTGAAAGGGCCG ATCGAGAAGGGCGTCGGCGACGGGCAAATGCAGTACTGCAGGGACCTGTTCGCGGCCCTCAAGAGCGCGGTGTCG TCGAGGAGCCGGCCGGGCGTCCCGTCGGGCGGCGCGCCGAGGATCAAGAAGAAGCTGAAGCGGAGCAAGGCGCTC CAGTCGGCGGACGGCAGCGTCGAGGGCGGCGGCGGACTGGCGCGCGCCGACACGAAGAACTGGGGCCCGCTGGAG CCGGTCAGAGGGCTGGCGGAGCCGCTGCTGGACGTGGTGCGGCCGGTGCTGACGAGCAACGTCATGTACGGGCTG CTGGTGGGCCTGCTGGTGGCCATGTGGTTCGGGTTCGGCTCGTCGCCGACCAAGAACTCGGCGTCGTACGGGCCC GAGGTGGGCTACTACAGCCCGAGCCGGCTGGCGGCGTACGAGGAGATGTGGCGGCGGGAGGAGAGCGAGCTCTGG GACTGGCTGGAGGAGCGGGTCGGGCTGGACCGACTGAGCTCGGACGCGTCGAACGGCGTCGGCGGCGTCGGCGGC GTCGGCGGCAAGAGGACGATGGCGGGACGGAGCGTCGAGGACAAGCTGAGGGACGGGCAGATGGACGAGAGGGAC GTCGAGGCGGCCATCTGGGTGACGGAGGAGAAGCTCAAGGTGCTGAAGGACGCCTTTGGCCGGAACGGCCGCGTC ACGGACCGCGAGAGGGAGAGCGGGCGGAGGGGCGAGCGGTGA |
| Gene | >Hirsu2|1102 ATGTTCGGCCCGGCCTCGGTCGACTGGATGGCCCGGTGGCTGACGGGCGACCAGCAGAAGTGCACCGACCTGCAG ATGGAGGACCGGAGGGGCCTGGGCCCGGACAACCGGTCGCGCAACTTCACCTACGTCAAGCCGCTCAACGCGTCG CTCGGCCCCAAGCAGACCAAGTGCATCGTGGCCGAGACGCTCGAGAACATGGACCTGGAGAGGGCCGTCAACCTG AGCGTGTCGACGCAGAACCCGGACGTGCCCAGCGGCAACGTCTTTTGCGTCAAGACCAAGTACTGCCTGTCGTGG GCCGAGAACAGCTGCACCCGCGTCCAGGTCAACTGCACGACGGAGTGGACGGGCAAGAGCTGGCTGAAAGGTGCG TACAGGACGAAGGAGGGCCGAGCCGTCGAGCCGTGAAACTGACAAACTCTCTCCTCCGCAGGGCCGATCGAGAAG GGCGTCGGCGACGGGCAAATGCAGTACTGCAGGGACCTGTTCGCGGCCCTCAAGAGCGCGGTGTCGTCGAGGAGC CGGCCGGGCGTCCCGTCGGGCGGCGCGCCGAGGATCAAGAAGAAGCTGAAGCGGAGCAAGGCGCTCCAGTCGGCG GACGGCAGCGTCGAGGGCGGCGGCGGACTGGCGCGCGCCGACACGAAGAACTGGGGCCCGCTGGAGCCGGTCAGA GGGCTGGCGGAGCCGCTGCTGGACGTGGTGCGGCCGGTGCTGACGAGCAACGTCATGTACGGGCTGCTGGTGGGC CTGCTGGTGGCCATGTGGTTCGGGTTCGGCTCGTCGCCGACCAAGAACTCGGCGTCGTACGGGCCCGAGGTGGGC TACTACAGCCCGAGCCGGCTGGCGGCGTACGAGGAGATGTGGCGGCGGGAGGAGAGCGAGCTCTGGGACTGGCTG GAGGAGCGGGTCGGGCTGGACCGACTGAGCTCGGACGCGTCGAACGGCGTCGGCGGCGTCGGCGGCGTCGGCGGC AAGAGGACGATGGCGGGACGGAGCGTCGAGGACAAGCTGAGGGACGGGCAGATGGACGAGAGGGACGTCGAGGCG GCCATCTGGGTGACGGAGGAGAAGCTCAAGGTGCTGAAGGACGCCTTTGGCCGGAACGGCCGCGTCACGGACCGC GAGAGGGAGAGCGGGCGGAGGGGCGAGCGGTGA |