Protein ID | Hirsu2|11018 |
Gene name | |
Location | Contig_947:1041..2283 |
Strand | + |
Gene length (bp) | 1242 |
Transcript length (bp) | 1176 |
Coding sequence length (bp) | 1176 |
Protein length (aa) | 392 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF03403 | PAF-AH_p_II | Platelet-activating factor acetylhydrolase, isoform II | 1.1E-10 | 127 | 165 |
PF03403 | PAF-AH_p_II | Platelet-activating factor acetylhydrolase, isoform II | 6.0E-05 | 218 | 268 |
PF12740 | Chlorophyllase2 | Chlorophyllase enzyme | 1.2E-06 | 128 | 249 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|D4AZY1|A1751_ARTBC | Probable 1-alkyl-2-acetylglycerophosphocholine esterase OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01751 PE=1 SV=1 | 1 | 370 | 1.0E-26 |
sp|Q28017|PAFA_BOVIN | Platelet-activating factor acetylhydrolase OS=Bos taurus GN=PLA2G7 PE=2 SV=1 | 127 | 273 | 6.0E-13 |
sp|Q13093|PAFA_HUMAN | Platelet-activating factor acetylhydrolase OS=Homo sapiens GN=PLA2G7 PE=1 SV=1 | 127 | 273 | 6.0E-13 |
sp|Q99487|PAFA2_HUMAN | Platelet-activating factor acetylhydrolase 2, cytoplasmic OS=Homo sapiens GN=PAFAH2 PE=1 SV=1 | 119 | 263 | 7.0E-10 |
sp|Q60963|PAFA_MOUSE | Platelet-activating factor acetylhydrolase OS=Mus musculus GN=Pla2g7 PE=2 SV=2 | 127 | 359 | 2.0E-09 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|D4AZY1|A1751_ARTBC | Probable 1-alkyl-2-acetylglycerophosphocholine esterase OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01751 PE=1 SV=1 | 1 | 370 | 1.0E-26 |
sp|Q28017|PAFA_BOVIN | Platelet-activating factor acetylhydrolase OS=Bos taurus GN=PLA2G7 PE=2 SV=1 | 127 | 273 | 6.0E-13 |
sp|Q13093|PAFA_HUMAN | Platelet-activating factor acetylhydrolase OS=Homo sapiens GN=PLA2G7 PE=1 SV=1 | 127 | 273 | 6.0E-13 |
sp|Q99487|PAFA2_HUMAN | Platelet-activating factor acetylhydrolase 2, cytoplasmic OS=Homo sapiens GN=PAFAH2 PE=1 SV=1 | 119 | 263 | 7.0E-10 |
sp|Q60963|PAFA_MOUSE | Platelet-activating factor acetylhydrolase OS=Mus musculus GN=Pla2g7 PE=2 SV=2 | 127 | 359 | 2.0E-09 |
sp|P79106|PAFA2_BOVIN | Platelet-activating factor acetylhydrolase 2, cytoplasmic OS=Bos taurus GN=PAFAH2 PE=1 SV=1 | 120 | 263 | 6.0E-09 |
sp|P83006|PAFA2_RAT | Platelet-activating factor acetylhydrolase 2, cytoplasmic OS=Rattus norvegicus GN=Pafah2 PE=1 SV=2 | 129 | 263 | 1.0E-07 |
sp|Q8VDG7|PAFA2_MOUSE | Platelet-activating factor acetylhydrolase 2, cytoplasmic OS=Mus musculus GN=Pafah2 PE=1 SV=2 | 129 | 263 | 3.0E-07 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016042 | lipid catabolic process | Yes |
GO:0003847 | 1-alkyl-2-acetylglycerophosphocholine esterase activity | Yes |
GO:1901575 | organic substance catabolic process | No |
GO:0006629 | lipid metabolic process | No |
GO:0052689 | carboxylic ester hydrolase activity | No |
GO:0071704 | organic substance metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0003824 | catalytic activity | No |
GO:0044238 | primary metabolic process | No |
GO:0016788 | hydrolase activity, acting on ester bonds | No |
GO:0008150 | biological_process | No |
GO:0016787 | hydrolase activity | No |
GO:0003674 | molecular_function | No |
GO:0009056 | catabolic process | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.2369 | 0.1503 | 0.746 | 0.1828 | 0.2059 | 0.2706 | 0.4172 | 0.515 | 0.3472 | 0.2429 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 18 | 0.999763 |
Orthofinder run ID | 4 |
Orthogroup | 4863 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|11018 MLLLPVVVVAAVLAAVQAVRVPGPTGPYPVAMRVQQLTDQRRLDPYAPPGRPHKRRILVSVFLPLDPGRFADGPV QSVPYMPPRTAALYGDEAVRESPLPRDFFSRLTIDFSQFPKNGSTSDEGHRRRYPVVLFSHGLGGSRLLHTAAAR DIASQGYVVMTIDHPYDASYVEFPDGSEVRGANISTMPAIIRSVQVRAADVSFLVDQLHDSAALQRLTAGMAGGV DADKVVVCGHSLGGATSAAVMANDSRIAGGLDLDGHIIGPVADEGFDRPFALVGKPGRGQTAGSKWPELYSRLRG PKMELAVAETEHLSFFDVPLLLTTAKVADGDRPRLDAALGRVNGRRLRGITMGIFTAFLDLVFRGKADGLRNLDK DFCGVSVVKSELPQGS* |
Coding | >Hirsu2|11018 ATGCTGCTGCTGCCCGTTGTCGTCGTCGCGGCTGTCCTGGCGGCCGTCCAGGCCGTTCGGGTCCCCGGCCCGACG GGTCCGTATCCGGTCGCGATGCGAGTCCAGCAGCTGACGGACCAGCGGCGCCTCGACCCGTACGCGCCCCCGGGC AGGCCTCACAAGAGGCGCATCCTCGTCTCCGTCTTTCTGCCGCTCGACCCCGGGCGCTTCGCCGACGGCCCCGTG CAGAGCGTGCCATACATGCCGCCCCGCACCGCGGCTCTGTACGGCGACGAGGCTGTCAGAGAGTCTCCCCTGCCC CGGGATTTCTTTTCCCGCCTCACCATCGACTTCTCGCAGTTTCCCAAGAACGGCAGCACGAGCGACGAGGGCCAC CGGCGGCGATACCCCGTTGTCCTCTTCTCACACGGGCTCGGCGGGTCGAGACTGCTGCACACGGCTGCCGCGCGG GACATCGCCAGCCAGGGCTATGTGGTGATGACCATCGACCATCCTTACGACGCCTCCTATGTGGAATTCCCCGAC GGCTCCGAGGTCCGCGGCGCCAACATATCGACGATGCCGGCCATCATTCGGTCGGTCCAGGTTCGCGCGGCAGAC GTCTCGTTCCTCGTCGATCAGCTGCACGACTCGGCGGCTCTGCAGCGGCTAACGGCCGGGATGGCCGGCGGCGTC GACGCGGACAAGGTGGTCGTCTGCGGGCACTCGCTGGGGGGCGCGACGAGCGCGGCCGTCATGGCCAACGACAGC CGCATCGCGGGGGGCCTGGACCTGGACGGGCACATCATCGGGCCGGTCGCCGACGAGGGCTTCGACAGGCCGTTT GCGCTGGTGGGAAAGCCCGGGCGCGGGCAGACGGCCGGGTCCAAGTGGCCCGAGCTGTACTCTCGCCTGCGGGGG CCCAAGATGGAGCTGGCCGTGGCCGAGACGGAGCACCTGTCGTTCTTCGACGTGCCGCTGCTGCTGACGACGGCC AAGGTGGCCGACGGCGACCGGCCCAGGCTGGACGCGGCGCTCGGGCGCGTCAACGGACGCCGGCTGCGCGGCATC ACCATGGGCATCTTCACCGCCTTCCTCGACCTCGTATTCAGGGGCAAGGCGGACGGGCTGCGCAACCTGGACAAG GACTTTTGCGGCGTGTCCGTGGTGAAGAGCGAGCTCCCGCAAGGCTCGTGA |
Transcript | >Hirsu2|11018 ATGCTGCTGCTGCCCGTTGTCGTCGTCGCGGCTGTCCTGGCGGCCGTCCAGGCCGTTCGGGTCCCCGGCCCGACG GGTCCGTATCCGGTCGCGATGCGAGTCCAGCAGCTGACGGACCAGCGGCGCCTCGACCCGTACGCGCCCCCGGGC AGGCCTCACAAGAGGCGCATCCTCGTCTCCGTCTTTCTGCCGCTCGACCCCGGGCGCTTCGCCGACGGCCCCGTG CAGAGCGTGCCATACATGCCGCCCCGCACCGCGGCTCTGTACGGCGACGAGGCTGTCAGAGAGTCTCCCCTGCCC CGGGATTTCTTTTCCCGCCTCACCATCGACTTCTCGCAGTTTCCCAAGAACGGCAGCACGAGCGACGAGGGCCAC CGGCGGCGATACCCCGTTGTCCTCTTCTCACACGGGCTCGGCGGGTCGAGACTGCTGCACACGGCTGCCGCGCGG GACATCGCCAGCCAGGGCTATGTGGTGATGACCATCGACCATCCTTACGACGCCTCCTATGTGGAATTCCCCGAC GGCTCCGAGGTCCGCGGCGCCAACATATCGACGATGCCGGCCATCATTCGGTCGGTCCAGGTTCGCGCGGCAGAC GTCTCGTTCCTCGTCGATCAGCTGCACGACTCGGCGGCTCTGCAGCGGCTAACGGCCGGGATGGCCGGCGGCGTC GACGCGGACAAGGTGGTCGTCTGCGGGCACTCGCTGGGGGGCGCGACGAGCGCGGCCGTCATGGCCAACGACAGC CGCATCGCGGGGGGCCTGGACCTGGACGGGCACATCATCGGGCCGGTCGCCGACGAGGGCTTCGACAGGCCGTTT GCGCTGGTGGGAAAGCCCGGGCGCGGGCAGACGGCCGGGTCCAAGTGGCCCGAGCTGTACTCTCGCCTGCGGGGG CCCAAGATGGAGCTGGCCGTGGCCGAGACGGAGCACCTGTCGTTCTTCGACGTGCCGCTGCTGCTGACGACGGCC AAGGTGGCCGACGGCGACCGGCCCAGGCTGGACGCGGCGCTCGGGCGCGTCAACGGACGCCGGCTGCGCGGCATC ACCATGGGCATCTTCACCGCCTTCCTCGACCTCGTATTCAGGGGCAAGGCGGACGGGCTGCGCAACCTGGACAAG GACTTTTGCGGCGTGTCCGTGGTGAAGAGCGAGCTCCCGCAAGGCTCGTGA |
Gene | >Hirsu2|11018 ATGCTGCTGCTGCCCGTTGTCGTCGTCGCGGCTGTCCTGGCGGCCGTCCAGGCCGTTCGGGTCCCCGGCCCGACG GGTCCGTATCCGGTCGCGATGCGAGTCCAGCAGCTGACGGACCAGCGGCGCCTCGACCCGTACGCGCCCCCGGGC AGGCCTCACAAGAGGCGCATCCTCGTCTCCGTCTTTCTGCCGCTCGACCCCGGGCGCTTCGCCGACGGCCCCGTG CAGAGCGTGCCATACATGCCGCCCCGCACCGCGGCTCTGTACGGCGACGAGGCTGTCAGAGAGTCTCCCCTGCCC CGGGATTTCTTTTCCCGCCTCACCATCGACTTCTCGCAGTTTCCCAAGAACGGCAGCACGAGCGACGAGGGCCAC CGGCGGCGATACCCCGTTGTCCTCTTCTCACACGGGCTCGGCGGGTCGAGACTGCTGCACACGGCTGCCGCGCGG GACATCGCCAGCCAGGGCTATGTGGTGATGACCATCGACCATCCTTACGACGCCTCCTATGTGGAATTCCCCGAC GGCTCCGAGGTCCGCGGCGCCAACATATCGACGATGCCGGCCATCATTCGGTCGGTCCAGGTCAGTTGGCAGGTC TCGCCCGGCGTTGATGGGTCTCATCGTTGACGGGGGCATCCTCCTCGGCAGGTTCGCGCGGCAGACGTCTCGTTC CTCGTCGATCAGCTGCACGACTCGGCGGCTCTGCAGCGGCTAACGGCCGGGATGGCCGGCGGCGTCGACGCGGAC AAGGTGGTCGTCTGCGGGCACTCGCTGGGGGGCGCGACGAGCGCGGCCGTCATGGCCAACGACAGCCGCATCGCG GGGGGCCTGGACCTGGACGGGCACATCATCGGGCCGGTCGCCGACGAGGGCTTCGACAGGCCGTTTGCGCTGGTG GGAAAGCCCGGGCGCGGGCAGACGGCCGGGTCCAAGTGGCCCGAGCTGTACTCTCGCCTGCGGGGGCCCAAGATG GAGCTGGCCGTGGCCGAGACGGAGCACCTGTCGTTCTTCGACGTGCCGCTGCTGCTGACGACGGCCAAGGTGGCC GACGGCGACCGGCCCAGGCTGGACGCGGCGCTCGGGCGCGTCAACGGACGCCGGCTGCGCGGCATCACCATGGGC ATCTTCACCGCCTTCCTCGACCTCGTATTCAGGGGCAAGGCGGACGGGCTGCGCAACCTGGACAAGGACTTTTGC GGCGTGTCCGTGGTGAAGAGCGAGCTCCCGCAAGGCTCGTGA |