Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|11009
Gene name
LocationContig_945:3790..4292
Strand-
Gene length (bp)502
Transcript length (bp)435
Coding sequence length (bp)435
Protein length (aa) 145

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Endoplasmic reticulum Signal peptide|Transmembrane domain 0.2073 0.2024 0.3405 0.3928 0.436 0.0713 0.481 0.2066 0.2685 0.1131

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 4 26 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup8647
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|11009 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|11009
MSLSAEALIALASLVTGLPPTVLAVTKFVERYQRKRRPESSHGAVPAGSGAFGRVARLTPAPAAAGPYPRQRWRR
DRRRMLSLRPRLAANAQMGAGAGRVPLQPGQADALVLNWRSRLTAGTCTQTPTLVEPDKIQQVEAAHTW*
Coding >Hirsu2|11009
ATGAGCCTGTCCGCCGAGGCCCTCATCGCCCTCGCATCGCTCGTCACAGGATTGCCTCCGACGGTTCTGGCCGTG
ACCAAGTTTGTCGAACGCTACCAGCGGAAAAGACGCCCGGAGTCGAGTCATGGAGCTGTACCTGCCGGTAGTGGG
GCCTTTGGACGGGTCGCTCGACTCACGCCCGCCCCCGCCGCCGCCGGTCCTTATCCGCGCCAGAGGTGGCGACGC
GACCGACGACGCATGCTGTCCCTCCGGCCGAGACTCGCCGCGAACGCACAAATGGGCGCCGGCGCCGGCCGCGTC
CCACTTCAGCCGGGTCAGGCCGATGCTCTTGTATTGAACTGGCGCTCAAGACTGACTGCTGGGACGTGCACGCAG
ACGCCTACCCTCGTCGAGCCGGACAAGATCCAACAGGTCGAAGCGGCGCATACGTGGTGA
Transcript >Hirsu2|11009
ATGAGCCTGTCCGCCGAGGCCCTCATCGCCCTCGCATCGCTCGTCACAGGATTGCCTCCGACGGTTCTGGCCGTG
ACCAAGTTTGTCGAACGCTACCAGCGGAAAAGACGCCCGGAGTCGAGTCATGGAGCTGTACCTGCCGGTAGTGGG
GCCTTTGGACGGGTCGCTCGACTCACGCCCGCCCCCGCCGCCGCCGGTCCTTATCCGCGCCAGAGGTGGCGACGC
GACCGACGACGCATGCTGTCCCTCCGGCCGAGACTCGCCGCGAACGCACAAATGGGCGCCGGCGCCGGCCGCGTC
CCACTTCAGCCGGGTCAGGCCGATGCTCTTGTATTGAACTGGCGCTCAAGACTGACTGCTGGGACGTGCACGCAG
ACGCCTACCCTCGTCGAGCCGGACAAGATCCAACAGGTCGAAGCGGCGCATACGTGGTGA
Gene >Hirsu2|11009
ATGAGCCTGTCCGCCGAGGCCCTCATCGCCCTCGCATCGCTCGTCACAGGATTGCCTCCGACGGTTCTGGCCGTG
ACCAAGTTTGTCGAACGCTACCAGCGGAAAAGACGCCCGGAGTCGAGTCATGGAGCTGTACGTCTGAGTTTTGTC
TGTTGATGACGACATCGGAGCCGGAACGCTGACCGAAACGAACGTCGGTCTAGCTGCCGGTAGTGGGGCCTTTGG
ACGGGTCGCTCGACTCACGCCCGCCCCCGCCGCCGCCGGTCCTTATCCGCGCCAGAGGTGGCGACGCGACCGACG
ACGCATGCTGTCCCTCCGGCCGAGACTCGCCGCGAACGCACAAATGGGCGCCGGCGCCGGCCGCGTCCCACTTCA
GCCGGGTCAGGCCGATGCTCTTGTATTGAACTGGCGCTCAAGACTGACTGCTGGGACGTGCACGCAGACGCCTAC
CCTCGTCGAGCCGGACAAGATCCAACAGGTCGAAGCGGCGCATACGTGGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail