Protein ID | Hirsu2|110 |
Gene name | |
Location | Contig_1015:7418..8219 |
Strand | + |
Gene length (bp) | 801 |
Transcript length (bp) | 801 |
Coding sequence length (bp) | 801 |
Protein length (aa) | 267 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide|Transmembrane domain | 0.2263 | 0.1554 | 0.2078 | 0.6062 | 0.2648 | 0.0302 | 0.1075 | 0.5153 | 0.1725 | 0.0457 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 10 | 32 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 6508 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|110 MADPSCTVTIVLATTIPSAVLLLLGAVLFWRLFRRKKRLFHRGITPIDDEEIASWKTARSDEKVAGPGPPSSIWR DSLPSSHRPSNSVVSSRKPASVIVYQNPSQHGLRLSEDMPTSPPHNKRSVDVPPTPVLARAPNARPGLTDEAIQG EDAFIAQARRHPCRLAKPPPPRVPRHNRSKSSRATMSGATGTRDLWYGQHFDYQRLPRRSADQILPMSAAFGADF SDVPSTRSTPVRATFDDDVAFPGGLSPRPLVRKSEIGRAIG* |
Coding | >Hirsu2|110 ATGGCGGACCCGAGCTGTACCGTCACCATCGTCCTGGCGACGACGATCCCGTCCGCCGTGCTCCTCCTCCTGGGC GCCGTGCTGTTCTGGCGCCTGTTCCGGCGCAAGAAGCGCCTCTTCCACCGCGGCATCACGCCCATCGACGACGAG GAGATTGCGTCGTGGAAGACGGCCCGGTCCGACGAAAAGGTGGCCGGTCCCGGGCCGCCGTCGAGCATATGGCGT GACAGCCTGCCCTCGAGCCACCGGCCCTCCAACTCGGTCGTCTCGTCGCGCAAGCCGGCCAGCGTCATCGTCTAC CAGAACCCGTCCCAGCACGGCCTGCGCCTGTCCGAGGACATGCCCACCTCTCCGCCCCACAACAAGCGAAGCGTC GACGTGCCGCCCACGCCCGTCCTGGCCCGGGCCCCGAACGCGCGGCCCGGCCTGACGGACGAGGCCATCCAGGGC GAGGACGCCTTCATCGCCCAGGCCAGGCGCCACCCGTGCCGCCTGGCCAAGCCGCCGCCGCCGCGGGTGCCGCGC CACAACCGCAGCAAGAGCTCGCGGGCCACCATGTCCGGCGCGACCGGCACGCGCGACCTGTGGTACGGCCAGCAC TTTGACTACCAGAGGCTGCCTCGCCGGTCCGCCGACCAGATCCTCCCCATGTCGGCCGCCTTCGGGGCCGATTTC AGCGACGTGCCCTCGACGCGATCCACGCCCGTCCGAGCCACCTTTGACGACGACGTCGCCTTCCCCGGCGGCCTC TCCCCACGACCTCTGGTCCGCAAGTCGGAGATCGGGCGGGCCATAGGCTGA |
Transcript | >Hirsu2|110 ATGGCGGACCCGAGCTGTACCGTCACCATCGTCCTGGCGACGACGATCCCGTCCGCCGTGCTCCTCCTCCTGGGC GCCGTGCTGTTCTGGCGCCTGTTCCGGCGCAAGAAGCGCCTCTTCCACCGCGGCATCACGCCCATCGACGACGAG GAGATTGCGTCGTGGAAGACGGCCCGGTCCGACGAAAAGGTGGCCGGTCCCGGGCCGCCGTCGAGCATATGGCGT GACAGCCTGCCCTCGAGCCACCGGCCCTCCAACTCGGTCGTCTCGTCGCGCAAGCCGGCCAGCGTCATCGTCTAC CAGAACCCGTCCCAGCACGGCCTGCGCCTGTCCGAGGACATGCCCACCTCTCCGCCCCACAACAAGCGAAGCGTC GACGTGCCGCCCACGCCCGTCCTGGCCCGGGCCCCGAACGCGCGGCCCGGCCTGACGGACGAGGCCATCCAGGGC GAGGACGCCTTCATCGCCCAGGCCAGGCGCCACCCGTGCCGCCTGGCCAAGCCGCCGCCGCCGCGGGTGCCGCGC CACAACCGCAGCAAGAGCTCGCGGGCCACCATGTCCGGCGCGACCGGCACGCGCGACCTGTGGTACGGCCAGCAC TTTGACTACCAGAGGCTGCCTCGCCGGTCCGCCGACCAGATCCTCCCCATGTCGGCCGCCTTCGGGGCCGATTTC AGCGACGTGCCCTCGACGCGATCCACGCCCGTCCGAGCCACCTTTGACGACGACGTCGCCTTCCCCGGCGGCCTC TCCCCACGACCTCTGGTCCGCAAGTCGGAGATCGGGCGGGCCATAGGCTGA |
Gene | >Hirsu2|110 ATGGCGGACCCGAGCTGTACCGTCACCATCGTCCTGGCGACGACGATCCCGTCCGCCGTGCTCCTCCTCCTGGGC GCCGTGCTGTTCTGGCGCCTGTTCCGGCGCAAGAAGCGCCTCTTCCACCGCGGCATCACGCCCATCGACGACGAG GAGATTGCGTCGTGGAAGACGGCCCGGTCCGACGAAAAGGTGGCCGGTCCCGGGCCGCCGTCGAGCATATGGCGT GACAGCCTGCCCTCGAGCCACCGGCCCTCCAACTCGGTCGTCTCGTCGCGCAAGCCGGCCAGCGTCATCGTCTAC CAGAACCCGTCCCAGCACGGCCTGCGCCTGTCCGAGGACATGCCCACCTCTCCGCCCCACAACAAGCGAAGCGTC GACGTGCCGCCCACGCCCGTCCTGGCCCGGGCCCCGAACGCGCGGCCCGGCCTGACGGACGAGGCCATCCAGGGC GAGGACGCCTTCATCGCCCAGGCCAGGCGCCACCCGTGCCGCCTGGCCAAGCCGCCGCCGCCGCGGGTGCCGCGC CACAACCGCAGCAAGAGCTCGCGGGCCACCATGTCCGGCGCGACCGGCACGCGCGACCTGTGGTACGGCCAGCAC TTTGACTACCAGAGGCTGCCTCGCCGGTCCGCCGACCAGATCCTCCCCATGTCGGCCGCCTTCGGGGCCGATTTC AGCGACGTGCCCTCGACGCGATCCACGCCCGTCCGAGCCACCTTTGACGACGACGTCGCCTTCCCCGGCGGCCTC TCCCCACGACCTCTGGTCCGCAAGTCGGAGATCGGGCGGGCCATAGGCTGA |