© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|110 |
| Gene name | |
| Location | Contig_1015:7418..8219 |
| Strand | + |
| Gene length (bp) | 801 |
| Transcript length (bp) | 801 |
| Coding sequence length (bp) | 801 |
| Protein length (aa) | 267 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Signal peptide|Transmembrane domain | 0.2263 | 0.1554 | 0.2078 | 0.6062 | 0.2648 | 0.0302 | 0.1075 | 0.5153 | 0.1725 | 0.0457 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6508 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|110 MADPSCTVTIVLATTIPSAVLLLLGAVLFWRLFRRKKRLFHRGITPIDDEEIASWKTARSDEKVAGPGPPSSIWR DSLPSSHRPSNSVVSSRKPASVIVYQNPSQHGLRLSEDMPTSPPHNKRSVDVPPTPVLARAPNARPGLTDEAIQG EDAFIAQARRHPCRLAKPPPPRVPRHNRSKSSRATMSGATGTRDLWYGQHFDYQRLPRRSADQILPMSAAFGADF SDVPSTRSTPVRATFDDDVAFPGGLSPRPLVRKSEIGRAIG* |
| Coding | >Hirsu2|110 ATGGCGGACCCGAGCTGTACCGTCACCATCGTCCTGGCGACGACGATCCCGTCCGCCGTGCTCCTCCTCCTGGGC GCCGTGCTGTTCTGGCGCCTGTTCCGGCGCAAGAAGCGCCTCTTCCACCGCGGCATCACGCCCATCGACGACGAG GAGATTGCGTCGTGGAAGACGGCCCGGTCCGACGAAAAGGTGGCCGGTCCCGGGCCGCCGTCGAGCATATGGCGT GACAGCCTGCCCTCGAGCCACCGGCCCTCCAACTCGGTCGTCTCGTCGCGCAAGCCGGCCAGCGTCATCGTCTAC CAGAACCCGTCCCAGCACGGCCTGCGCCTGTCCGAGGACATGCCCACCTCTCCGCCCCACAACAAGCGAAGCGTC GACGTGCCGCCCACGCCCGTCCTGGCCCGGGCCCCGAACGCGCGGCCCGGCCTGACGGACGAGGCCATCCAGGGC GAGGACGCCTTCATCGCCCAGGCCAGGCGCCACCCGTGCCGCCTGGCCAAGCCGCCGCCGCCGCGGGTGCCGCGC CACAACCGCAGCAAGAGCTCGCGGGCCACCATGTCCGGCGCGACCGGCACGCGCGACCTGTGGTACGGCCAGCAC TTTGACTACCAGAGGCTGCCTCGCCGGTCCGCCGACCAGATCCTCCCCATGTCGGCCGCCTTCGGGGCCGATTTC AGCGACGTGCCCTCGACGCGATCCACGCCCGTCCGAGCCACCTTTGACGACGACGTCGCCTTCCCCGGCGGCCTC TCCCCACGACCTCTGGTCCGCAAGTCGGAGATCGGGCGGGCCATAGGCTGA |
| Transcript | >Hirsu2|110 ATGGCGGACCCGAGCTGTACCGTCACCATCGTCCTGGCGACGACGATCCCGTCCGCCGTGCTCCTCCTCCTGGGC GCCGTGCTGTTCTGGCGCCTGTTCCGGCGCAAGAAGCGCCTCTTCCACCGCGGCATCACGCCCATCGACGACGAG GAGATTGCGTCGTGGAAGACGGCCCGGTCCGACGAAAAGGTGGCCGGTCCCGGGCCGCCGTCGAGCATATGGCGT GACAGCCTGCCCTCGAGCCACCGGCCCTCCAACTCGGTCGTCTCGTCGCGCAAGCCGGCCAGCGTCATCGTCTAC CAGAACCCGTCCCAGCACGGCCTGCGCCTGTCCGAGGACATGCCCACCTCTCCGCCCCACAACAAGCGAAGCGTC GACGTGCCGCCCACGCCCGTCCTGGCCCGGGCCCCGAACGCGCGGCCCGGCCTGACGGACGAGGCCATCCAGGGC GAGGACGCCTTCATCGCCCAGGCCAGGCGCCACCCGTGCCGCCTGGCCAAGCCGCCGCCGCCGCGGGTGCCGCGC CACAACCGCAGCAAGAGCTCGCGGGCCACCATGTCCGGCGCGACCGGCACGCGCGACCTGTGGTACGGCCAGCAC TTTGACTACCAGAGGCTGCCTCGCCGGTCCGCCGACCAGATCCTCCCCATGTCGGCCGCCTTCGGGGCCGATTTC AGCGACGTGCCCTCGACGCGATCCACGCCCGTCCGAGCCACCTTTGACGACGACGTCGCCTTCCCCGGCGGCCTC TCCCCACGACCTCTGGTCCGCAAGTCGGAGATCGGGCGGGCCATAGGCTGA |
| Gene | >Hirsu2|110 ATGGCGGACCCGAGCTGTACCGTCACCATCGTCCTGGCGACGACGATCCCGTCCGCCGTGCTCCTCCTCCTGGGC GCCGTGCTGTTCTGGCGCCTGTTCCGGCGCAAGAAGCGCCTCTTCCACCGCGGCATCACGCCCATCGACGACGAG GAGATTGCGTCGTGGAAGACGGCCCGGTCCGACGAAAAGGTGGCCGGTCCCGGGCCGCCGTCGAGCATATGGCGT GACAGCCTGCCCTCGAGCCACCGGCCCTCCAACTCGGTCGTCTCGTCGCGCAAGCCGGCCAGCGTCATCGTCTAC CAGAACCCGTCCCAGCACGGCCTGCGCCTGTCCGAGGACATGCCCACCTCTCCGCCCCACAACAAGCGAAGCGTC GACGTGCCGCCCACGCCCGTCCTGGCCCGGGCCCCGAACGCGCGGCCCGGCCTGACGGACGAGGCCATCCAGGGC GAGGACGCCTTCATCGCCCAGGCCAGGCGCCACCCGTGCCGCCTGGCCAAGCCGCCGCCGCCGCGGGTGCCGCGC CACAACCGCAGCAAGAGCTCGCGGGCCACCATGTCCGGCGCGACCGGCACGCGCGACCTGTGGTACGGCCAGCAC TTTGACTACCAGAGGCTGCCTCGCCGGTCCGCCGACCAGATCCTCCCCATGTCGGCCGCCTTCGGGGCCGATTTC AGCGACGTGCCCTCGACGCGATCCACGCCCGTCCGAGCCACCTTTGACGACGACGTCGCCTTCCCCGGCGGCCTC TCCCCACGACCTCTGGTCCGCAAGTCGGAGATCGGGCGGGCCATAGGCTGA |