Protein ID | Hirsu2|10965 |
Gene name | |
Location | Contig_935:8235..9348 |
Strand | + |
Gene length (bp) | 1113 |
Transcript length (bp) | 741 |
Coding sequence length (bp) | 741 |
Protein length (aa) | 247 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF02104 | SURF1 | SURF1 family | 5.0E-57 | 10 | 219 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9Y810|SHY1_SCHPO | Cytochrome oxidase assembly protein shy1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=shy1 PE=3 SV=1 | 7 | 231 | 8.0E-61 |
sp|P09925|SURF1_MOUSE | Surfeit locus protein 1 OS=Mus musculus GN=Surf1 PE=1 SV=3 | 7 | 234 | 1.0E-47 |
sp|Q15526|SURF1_HUMAN | Surfeit locus protein 1 OS=Homo sapiens GN=SURF1 PE=1 SV=1 | 7 | 236 | 8.0E-46 |
sp|Q9QXU2|SURF1_RAT | Surfeit locus protein 1 OS=Rattus norvegicus GN=Surf1 PE=2 SV=1 | 7 | 236 | 1.0E-45 |
sp|A4IHH4|SURF1_XENTR | Surfeit locus protein 1 OS=Xenopus tropicalis GN=surf1 PE=2 SV=1 | 7 | 231 | 1.0E-43 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9Y810|SHY1_SCHPO | Cytochrome oxidase assembly protein shy1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=shy1 PE=3 SV=1 | 7 | 231 | 8.0E-61 |
sp|P09925|SURF1_MOUSE | Surfeit locus protein 1 OS=Mus musculus GN=Surf1 PE=1 SV=3 | 7 | 234 | 1.0E-47 |
sp|Q15526|SURF1_HUMAN | Surfeit locus protein 1 OS=Homo sapiens GN=SURF1 PE=1 SV=1 | 7 | 236 | 8.0E-46 |
sp|Q9QXU2|SURF1_RAT | Surfeit locus protein 1 OS=Rattus norvegicus GN=Surf1 PE=2 SV=1 | 7 | 236 | 1.0E-45 |
sp|A4IHH4|SURF1_XENTR | Surfeit locus protein 1 OS=Xenopus tropicalis GN=surf1 PE=2 SV=1 | 7 | 231 | 1.0E-43 |
sp|Q800L1|SURF1_CHICK | Surfeit locus protein 1 OS=Gallus gallus GN=SURF1 PE=3 SV=1 | 8 | 226 | 6.0E-43 |
sp|O57593|SURF1_TAKRU | Surfeit locus protein 1 (Fragment) OS=Takifugu rubripes GN=surf1 PE=3 SV=1 | 7 | 226 | 2.0E-42 |
sp|Q9U4F3|SURF1_DROME | SURF1-like protein OS=Drosophila melanogaster GN=Surf1 PE=2 SV=1 | 7 | 234 | 4.0E-42 |
sp|A8Y2C9|SURF1_CAEBR | SURF1-like protein OS=Caenorhabditis briggsae GN=sft-1 PE=3 SV=1 | 6 | 224 | 3.0E-39 |
sp|A9UWF0|SURF1_MONBE | SURF1-like protein OS=Monosiga brevicollis GN=18583 PE=3 SV=1 | 8 | 231 | 2.0E-38 |
sp|Q9N5N8|SURF1_CAEEL | SURF1-like protein OS=Caenorhabditis elegans GN=sft-1 PE=3 SV=1 | 6 | 224 | 2.0E-37 |
sp|P53266|SHY1_YEAST | Cytochrome oxidase assembly protein SHY1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHY1 PE=1 SV=1 | 7 | 176 | 1.0E-33 |
sp|Q556J9|SURF1_DICDI | SURF1-like protein OS=Dictyostelium discoideum GN=surf1-1 PE=3 SV=2 | 7 | 231 | 8.0E-33 |
sp|Q9SE51|SURF1_ARATH | Surfeit locus protein 1 OS=Arabidopsis thaliana GN=SURF1 PE=2 SV=1 | 6 | 230 | 4.0E-18 |
sp|Q1RJM4|SURF1_RICBR | SURF1-like protein OS=Rickettsia bellii (strain RML369-C) GN=RBE_0359 PE=3 SV=1 | 7 | 235 | 9.0E-16 |
sp|Q4UN32|SURF1_RICFE | SURF1-like protein OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0175 PE=3 SV=1 | 7 | 236 | 4.0E-15 |
sp|Q92GL0|SURF1_RICCN | SURF1-like protein OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC1113 PE=3 SV=1 | 7 | 231 | 7.0E-13 |
sp|Q9ZCJ8|SURF1_RICPR | SURF1-like protein OS=Rickettsia prowazekii (strain Madrid E) GN=RP733 PE=3 SV=1 | 2 | 224 | 3.0E-09 |
sp|P66884|Y2259_MYCBO | Uncharacterized SURF1-like protein Mb2259 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2259 PE=3 SV=1 | 18 | 193 | 8.0E-06 |
sp|P9WGA7|Y2235_MYCTU | Uncharacterized SURF1-like protein Rv2235 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv2235 PE=1 SV=1 | 18 | 193 | 8.0E-06 |
sp|P9WGA6|Y2235_MYCTO | Uncharacterized SURF1-like protein MT2294 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT2294 PE=3 SV=1 | 18 | 193 | 8.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016020 | membrane | Yes |
GO:0005575 | cellular_component | No |
GO:0110165 | cellular anatomical entity | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1757 | 0.1551 | 0.1213 | 0.2396 | 0.2251 | 0.0451 | 0.6858 | 0.1978 | 0.3432 | 0.0808 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 5 | 24 | 19 |
2 | 210 | 229 | 19 |
Orthofinder run ID | 4 |
Orthogroup | 1440 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|10965 MIRRIILLVLIPVTAFALGTWQVQRLSWKTELLAKLEDRLVRDPLPLPPHIDPTVVHEFDYRRVLATGRFRHDQE MLIGPRMRDGQDGYMVVTPLERDDASTILVNRGWISKKHRSQKTRPDSLPRGQVTVEGLLRKPWKKNMFTPHNRP DKGEFYFPDVEQMAALTGSQPVWIEATMEPEYMRMVDYEARGIPFGRPAEVNVRNNHAQYIFTWYSLCVATSVML YLVLKKPTPNIARRVQAGRDL* |
Coding | >Hirsu2|10965 ATGATCCGGAGAATCATCCTGCTAGTCCTCATCCCCGTAACGGCATTCGCGCTCGGCACTTGGCAGGTCCAGCGA CTGAGCTGGAAGACGGAACTGCTCGCAAAGTTGGAGGACCGCCTCGTGCGCGACCCTCTGCCCCTGCCGCCGCAC ATCGACCCGACCGTCGTCCATGAGTTCGACTACCGACGGGTTCTGGCCACGGGCCGCTTCCGCCACGACCAGGAG ATGCTCATTGGACCGCGCATGCGCGACGGCCAGGACGGCTACATGGTGGTGACGCCGCTTGAGCGCGACGACGCG TCCACCATCCTCGTCAACAGGGGCTGGATCAGCAAGAAGCACCGCAGCCAAAAGACGCGCCCGGACTCCCTGCCG CGGGGCCAAGTCACGGTCGAGGGGCTGCTGCGCAAGCCTTGGAAGAAGAACATGTTCACGCCGCACAACAGGCCC GACAAGGGAGAGTTCTACTTCCCCGACGTGGAGCAGATGGCGGCGCTGACCGGCAGTCAGCCGGTCTGGATTGAA GCTACCATGGAGCCCGAGTACATGAGAATGGTCGACTACGAGGCCCGTGGCATCCCCTTCGGACGGCCCGCCGAA GTCAACGTGAGGAACAACCACGCCCAGTACATCTTTACCTGGTACAGCTTGTGCGTCGCCACATCAGTCATGCTA TACTTGGTCCTCAAGAAACCGACGCCCAACATCGCCCGTCGCGTGCAAGCGGGCCGGGACTTGTAA |
Transcript | >Hirsu2|10965 ATGATCCGGAGAATCATCCTGCTAGTCCTCATCCCCGTAACGGCATTCGCGCTCGGCACTTGGCAGGTCCAGCGA CTGAGCTGGAAGACGGAACTGCTCGCAAAGTTGGAGGACCGCCTCGTGCGCGACCCTCTGCCCCTGCCGCCGCAC ATCGACCCGACCGTCGTCCATGAGTTCGACTACCGACGGGTTCTGGCCACGGGCCGCTTCCGCCACGACCAGGAG ATGCTCATTGGACCGCGCATGCGCGACGGCCAGGACGGCTACATGGTGGTGACGCCGCTTGAGCGCGACGACGCG TCCACCATCCTCGTCAACAGGGGCTGGATCAGCAAGAAGCACCGCAGCCAAAAGACGCGCCCGGACTCCCTGCCG CGGGGCCAAGTCACGGTCGAGGGGCTGCTGCGCAAGCCTTGGAAGAAGAACATGTTCACGCCGCACAACAGGCCC GACAAGGGAGAGTTCTACTTCCCCGACGTGGAGCAGATGGCGGCGCTGACCGGCAGTCAGCCGGTCTGGATTGAA GCTACCATGGAGCCCGAGTACATGAGAATGGTCGACTACGAGGCCCGTGGCATCCCCTTCGGACGGCCCGCCGAA GTCAACGTGAGGAACAACCACGCCCAGTACATCTTTACCTGGTACAGCTTGTGCGTCGCCACATCAGTCATGCTA TACTTGGTCCTCAAGAAACCGACGCCCAACATCGCCCGTCGCGTGCAAGCGGGCCGGGACTTGTAA |
Gene | >Hirsu2|10965 ATGATCCGGAGTTCGTTTCCATCCTTGATGCGCCTCCTCAAATTGTCCGTGCCGGTCGGAGACACGGTCCAGGAA TCATCCTGCTAGGTTCGTCGCACATCACCCACATTTGCGTCTGCCTTCCATCCGCCAGCACAGCTTGACGTCCGC CAGCCACGCGGCACTGTTCTCCATTCTTCTTGACGATGAAATGAAATGAAAAATTTCACCCCCGTCTCCTGACCT GCCGTCTTTCCCGCAGTCCTCATCCCCGTAACGGCATTCGCGCTCGGCACTTGGCAGGTCCAGCGACTGAGCTGG AAGACGGAACTGCTCGCAAAGTTGGAGGACCGCCTCGTGCGCGACCCTCTGCCCCTGCCGCCGCACATCGACCCG ACCGTCGTCCATGAGTTCGACTACCGACGGGTTCTGGCCACGGGCCGCTTCCGCCACGACCAGGAGATGCTCATT GGACCGCGCATGCGCGACGGCCAGGACGGCTACATGGTGGTGACGCCGCTTGAGCGCGACGACGCGTCCACCATC CTCGTCAACAGGGGCTGGATCAGCAAGAAGCACCGCAGCCAAAAGACGCGCCCGGACTCCCTGCCGCGGGGCCAA GTCACGGTCGAGGGGCTGCTGCGCAAGCCTTGGAAGAAGAACATGTTCACGCCGCACAACAGGCCCGACAAGGGA GAGTTCTACTTCCCCGACGTGGAGCAGATGGCGGCGCTGACCGGCAGTCAGCCGGTCTGGATTGAAGCTACCATG GGTATGTGCCCCCGTCAGACCCACGGCTTGCTCGTCCCGTGAGCTAAGTCGACAGCAGAGCCCGAGTACATGAGA ATGGTCGACTACGAGGCCCGTGGCATCCCCTTCGGACGGCCCGCCGAAGTCAACGTGAGGAACAACCACGCCCAG TACATCTTTACCTGGTGTGTTCCCGTGCCGCCCCCGTCGTCCTCCCCCCCTCCTCCCCAAACGTCTCCCTCTCAT ATGTCCACCTGCGGCATCTGGCTTACGCTGCCCTCAAGGTACAGCTTGTGCGTCGCCACATCAGTCATGCTATAC TTGGTCCTCAAGAAACCGACGCCCAACATCGCCCGTCGCGTGCAAGCGGGCCGGGACTTGTAA |