© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10962 |
| Gene name | |
| Location | Contig_935:1208..3570 |
| Strand | + |
| Gene length (bp) | 2362 |
| Transcript length (bp) | 2295 |
| Coding sequence length (bp) | 2295 |
| Protein length (aa) | 765 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04515 | Choline_transpo | Plasma-membrane choline transporter | 1.7E-29 | 410 | 735 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74441|CTL1_SCHPO | Choline transporter-like protein ctl1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctl1 PE=1 SV=1 | 302 | 753 | 8.0E-40 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 295 | 317 | 22 |
| 2 | 337 | 359 | 22 |
| 3 | 366 | 388 | 22 |
| 4 | 403 | 422 | 19 |
| 5 | 449 | 471 | 22 |
| 6 | 491 | 513 | 22 |
| 7 | 658 | 680 | 22 |
| 8 | 708 | 730 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10962 MFSEYASRFLAQSQSRLSNLGQPDSDHPPRSTDWPASRPGRHPRDAGRGAANAPPARSFLARGYAGSPYQQNGAG SRFGHLGFASRISAAQDAPLFHSTLDEFREEDDEGEREREAADLFALQRSRRVAAASKLAESTESANSRTSVDES AGDIENPYRGHGLGRGIRSSWNGTRSTHQPRPAQDEALFEEEAEEVPQPRGDRSDTGKGKMVDIGLESQVDGDEG PPGSLLAGEGPADASPPPFQQFSPGAEREPFILKRTSTSDSVLSSLQRQDAAESEPAQALGEGELFKHDPFFAWI FLISLAGMMSTFTLVWLHTSPRKSPVGDTIYTTLQRSFDMLAVDTVVSVFVSLVWLAALRSFVRPLVSVILVAVP VIMLSFSLYSFVSSFQGRTHGSSLQDSVMRWASLVPAAACLLWLWLVVKGRRAIQQAIEILQFSSKILAQNPGLL LVGFGCLALIVLWTWAWLAMFTRVFMGGYFSKSLVRFVIRVSSWWLGAAFILMYLWTLAVINAVHRATTAATVSQ WYFHRNAGPATPSREIVAAALGHATTTIFGSICQSTLMSLMLRAPLLFLPRRIGLGLTNLAAFWVPTPIIALTNP LTVTYSAIHSQCLATSARGLDQMEVVSPAMPTTTLTPRALRLRGQPNHGLLPYRLAKLLLVATRFIMATGLGFAG WVITAKQLQIQLPDGVGVRGSAYAYVVGLMASFIGYSVMGAMEGILSGIVDAVLICYGSERRMERGHGRFCLEAA YLFGERRIGDEAYA* |
| Coding | >Hirsu2|10962 ATGTTTTCGGAGTATGCTTCCCGCTTTCTAGCCCAGTCCCAGTCCCGGCTGTCCAACTTGGGCCAGCCCGACTCC GACCATCCGCCGCGATCGACCGACTGGCCGGCCTCGCGTCCGGGCCGCCACCCGCGAGACGCCGGCCGCGGCGCC GCCAACGCGCCGCCCGCCAGGTCCTTCCTCGCCCGCGGCTACGCCGGGAGCCCGTACCAGCAGAACGGCGCCGGC TCGCGCTTCGGCCACCTGGGCTTCGCCTCCCGCATATCGGCCGCCCAGGACGCGCCCCTCTTCCACAGCACCCTC GACGAGTTCCGCGAAGAGGACGACGAGGGCGAGCGGGAGAGGGAGGCGGCCGACCTGTTCGCGCTGCAGCGGTCG CGCCGCGTCGCCGCCGCCAGCAAGCTGGCCGAGAGCACCGAGTCGGCCAACAGCCGCACCTCGGTCGACGAGAGC GCGGGCGACATCGAGAACCCGTACCGCGGCCACGGCCTGGGGCGCGGCATCCGGAGCAGCTGGAACGGCACGAGG AGCACGCACCAGCCCCGCCCGGCCCAGGATGAGGCCCTGTTCGAGGAGGAGGCCGAGGAGGTGCCGCAGCCGCGG GGCGATCGATCGGATACCGGCAAGGGCAAGATGGTCGACATCGGCCTGGAATCGCAGGTAGACGGCGACGAGGGC CCGCCCGGGTCGCTCCTGGCCGGGGAGGGGCCCGCCGACGCGAGCCCCCCCCCCTTCCAGCAGTTCAGCCCGGGC GCCGAGCGGGAGCCCTTCATCCTCAAGCGGACGTCGACGAGCGACTCGGTCCTGAGCAGCCTGCAGCGCCAGGAC GCGGCCGAGAGCGAGCCGGCGCAGGCCCTGGGCGAGGGCGAGCTGTTCAAGCACGACCCCTTCTTCGCCTGGATC TTCCTCATCAGCCTGGCCGGCATGATGTCGACCTTCACCCTCGTCTGGCTGCACACGTCGCCGCGGAAGAGCCCG GTCGGCGACACCATCTACACGACGCTGCAGCGGTCGTTCGACATGCTGGCCGTCGACACCGTCGTCTCCGTCTTC GTCTCGCTCGTCTGGCTGGCCGCGCTGCGCTCCTTCGTCCGGCCGCTCGTCAGCGTCATCCTGGTGGCCGTGCCC GTCATCATGCTCTCCTTCTCCCTCTACTCCTTCGTCTCCTCCTTCCAGGGCCGGACGCACGGGTCCAGCCTGCAG GACAGCGTGATGCGGTGGGCCTCGCTCGTCCCGGCCGCCGCCTGCCTGCTCTGGCTGTGGCTCGTCGTCAAGGGG CGGCGGGCGATCCAGCAGGCCATCGAGATCCTGCAGTTCTCGTCCAAGATCCTGGCGCAGAACCCGGGCCTCCTG CTCGTCGGCTTCGGCTGCCTGGCCCTCATCGTGCTCTGGACGTGGGCCTGGCTGGCCATGTTCACGCGCGTCTTC ATGGGCGGCTACTTCTCCAAGTCGCTGGTCCGCTTCGTCATCCGCGTCTCGAGCTGGTGGCTGGGCGCGGCCTTC ATCCTCATGTACCTGTGGACGCTGGCCGTCATCAACGCCGTGCACCGGGCGACGACGGCGGCGACGGTGTCGCAG TGGTACTTTCACCGCAACGCCGGGCCGGCCACGCCGTCGCGCGAGATCGTCGCGGCGGCGCTGGGCCACGCGACG ACGACCATCTTCGGCAGCATCTGCCAGTCGACGCTCATGTCGCTGATGCTGCGCGCGCCGCTGCTCTTCCTGCCG CGCAGGATCGGGCTGGGCCTGACGAACCTGGCGGCCTTTTGGGTGCCGACGCCCATCATCGCGCTGACGAACCCG CTGACGGTGACGTACTCGGCCATCCACTCGCAGTGCCTGGCGACGTCGGCGCGCGGGCTGGACCAGATGGAGGTG GTGTCGCCGGCGATGCCGACGACGACGCTCACGCCGCGGGCCCTGCGCCTGCGCGGGCAGCCCAACCACGGGCTG CTCCCGTACCGGCTGGCCAAGCTGCTGCTGGTGGCGACGCGCTTCATCATGGCGACGGGGCTGGGCTTCGCCGGC TGGGTCATCACGGCCAAGCAGCTGCAGATCCAGCTGCCGGACGGCGTGGGGGTGCGCGGCTCGGCGTACGCCTAC GTCGTCGGCCTCATGGCCAGCTTCATCGGCTACTCGGTCATGGGGGCCATGGAGGGCATCCTCAGCGGCATCGTC GACGCCGTGCTCATCTGCTACGGCAGCGAGCGGCGCATGGAGCGCGGCCACGGCCGGTTCTGCCTCGAGGCGGCG TACCTGTTTGGCGAGAGGCGGATCGGCGACGAGGCATACGCCTAG |
| Transcript | >Hirsu2|10962 ATGTTTTCGGAGTATGCTTCCCGCTTTCTAGCCCAGTCCCAGTCCCGGCTGTCCAACTTGGGCCAGCCCGACTCC GACCATCCGCCGCGATCGACCGACTGGCCGGCCTCGCGTCCGGGCCGCCACCCGCGAGACGCCGGCCGCGGCGCC GCCAACGCGCCGCCCGCCAGGTCCTTCCTCGCCCGCGGCTACGCCGGGAGCCCGTACCAGCAGAACGGCGCCGGC TCGCGCTTCGGCCACCTGGGCTTCGCCTCCCGCATATCGGCCGCCCAGGACGCGCCCCTCTTCCACAGCACCCTC GACGAGTTCCGCGAAGAGGACGACGAGGGCGAGCGGGAGAGGGAGGCGGCCGACCTGTTCGCGCTGCAGCGGTCG CGCCGCGTCGCCGCCGCCAGCAAGCTGGCCGAGAGCACCGAGTCGGCCAACAGCCGCACCTCGGTCGACGAGAGC GCGGGCGACATCGAGAACCCGTACCGCGGCCACGGCCTGGGGCGCGGCATCCGGAGCAGCTGGAACGGCACGAGG AGCACGCACCAGCCCCGCCCGGCCCAGGATGAGGCCCTGTTCGAGGAGGAGGCCGAGGAGGTGCCGCAGCCGCGG GGCGATCGATCGGATACCGGCAAGGGCAAGATGGTCGACATCGGCCTGGAATCGCAGGTAGACGGCGACGAGGGC CCGCCCGGGTCGCTCCTGGCCGGGGAGGGGCCCGCCGACGCGAGCCCCCCCCCCTTCCAGCAGTTCAGCCCGGGC GCCGAGCGGGAGCCCTTCATCCTCAAGCGGACGTCGACGAGCGACTCGGTCCTGAGCAGCCTGCAGCGCCAGGAC GCGGCCGAGAGCGAGCCGGCGCAGGCCCTGGGCGAGGGCGAGCTGTTCAAGCACGACCCCTTCTTCGCCTGGATC TTCCTCATCAGCCTGGCCGGCATGATGTCGACCTTCACCCTCGTCTGGCTGCACACGTCGCCGCGGAAGAGCCCG GTCGGCGACACCATCTACACGACGCTGCAGCGGTCGTTCGACATGCTGGCCGTCGACACCGTCGTCTCCGTCTTC GTCTCGCTCGTCTGGCTGGCCGCGCTGCGCTCCTTCGTCCGGCCGCTCGTCAGCGTCATCCTGGTGGCCGTGCCC GTCATCATGCTCTCCTTCTCCCTCTACTCCTTCGTCTCCTCCTTCCAGGGCCGGACGCACGGGTCCAGCCTGCAG GACAGCGTGATGCGGTGGGCCTCGCTCGTCCCGGCCGCCGCCTGCCTGCTCTGGCTGTGGCTCGTCGTCAAGGGG CGGCGGGCGATCCAGCAGGCCATCGAGATCCTGCAGTTCTCGTCCAAGATCCTGGCGCAGAACCCGGGCCTCCTG CTCGTCGGCTTCGGCTGCCTGGCCCTCATCGTGCTCTGGACGTGGGCCTGGCTGGCCATGTTCACGCGCGTCTTC ATGGGCGGCTACTTCTCCAAGTCGCTGGTCCGCTTCGTCATCCGCGTCTCGAGCTGGTGGCTGGGCGCGGCCTTC ATCCTCATGTACCTGTGGACGCTGGCCGTCATCAACGCCGTGCACCGGGCGACGACGGCGGCGACGGTGTCGCAG TGGTACTTTCACCGCAACGCCGGGCCGGCCACGCCGTCGCGCGAGATCGTCGCGGCGGCGCTGGGCCACGCGACG ACGACCATCTTCGGCAGCATCTGCCAGTCGACGCTCATGTCGCTGATGCTGCGCGCGCCGCTGCTCTTCCTGCCG CGCAGGATCGGGCTGGGCCTGACGAACCTGGCGGCCTTTTGGGTGCCGACGCCCATCATCGCGCTGACGAACCCG CTGACGGTGACGTACTCGGCCATCCACTCGCAGTGCCTGGCGACGTCGGCGCGCGGGCTGGACCAGATGGAGGTG GTGTCGCCGGCGATGCCGACGACGACGCTCACGCCGCGGGCCCTGCGCCTGCGCGGGCAGCCCAACCACGGGCTG CTCCCGTACCGGCTGGCCAAGCTGCTGCTGGTGGCGACGCGCTTCATCATGGCGACGGGGCTGGGCTTCGCCGGC TGGGTCATCACGGCCAAGCAGCTGCAGATCCAGCTGCCGGACGGCGTGGGGGTGCGCGGCTCGGCGTACGCCTAC GTCGTCGGCCTCATGGCCAGCTTCATCGGCTACTCGGTCATGGGGGCCATGGAGGGCATCCTCAGCGGCATCGTC GACGCCGTGCTCATCTGCTACGGCAGCGAGCGGCGCATGGAGCGCGGCCACGGCCGGTTCTGCCTCGAGGCGGCG TACCTGTTTGGCGAGAGGCGGATCGGCGACGAGGCATACGCCTAG |
| Gene | >Hirsu2|10962 ATGTTTTCGGAGTGTGCGCCCGCCTCGCCTCTGCCCGGGCTCCCCGGCACACACACCGGCTGACTCTTGCCGCGC CGCAGATGCTTCCCGCTTTCTAGCCCAGTCCCAGTCCCGGCTGTCCAACTTGGGCCAGCCCGACTCCGACCATCC GCCGCGATCGACCGACTGGCCGGCCTCGCGTCCGGGCCGCCACCCGCGAGACGCCGGCCGCGGCGCCGCCAACGC GCCGCCCGCCAGGTCCTTCCTCGCCCGCGGCTACGCCGGGAGCCCGTACCAGCAGAACGGCGCCGGCTCGCGCTT CGGCCACCTGGGCTTCGCCTCCCGCATATCGGCCGCCCAGGACGCGCCCCTCTTCCACAGCACCCTCGACGAGTT CCGCGAAGAGGACGACGAGGGCGAGCGGGAGAGGGAGGCGGCCGACCTGTTCGCGCTGCAGCGGTCGCGCCGCGT CGCCGCCGCCAGCAAGCTGGCCGAGAGCACCGAGTCGGCCAACAGCCGCACCTCGGTCGACGAGAGCGCGGGCGA CATCGAGAACCCGTACCGCGGCCACGGCCTGGGGCGCGGCATCCGGAGCAGCTGGAACGGCACGAGGAGCACGCA CCAGCCCCGCCCGGCCCAGGATGAGGCCCTGTTCGAGGAGGAGGCCGAGGAGGTGCCGCAGCCGCGGGGCGATCG ATCGGATACCGGCAAGGGCAAGATGGTCGACATCGGCCTGGAATCGCAGGTAGACGGCGACGAGGGCCCGCCCGG GTCGCTCCTGGCCGGGGAGGGGCCCGCCGACGCGAGCCCCCCCCCCTTCCAGCAGTTCAGCCCGGGCGCCGAGCG GGAGCCCTTCATCCTCAAGCGGACGTCGACGAGCGACTCGGTCCTGAGCAGCCTGCAGCGCCAGGACGCGGCCGA GAGCGAGCCGGCGCAGGCCCTGGGCGAGGGCGAGCTGTTCAAGCACGACCCCTTCTTCGCCTGGATCTTCCTCAT CAGCCTGGCCGGCATGATGTCGACCTTCACCCTCGTCTGGCTGCACACGTCGCCGCGGAAGAGCCCGGTCGGCGA CACCATCTACACGACGCTGCAGCGGTCGTTCGACATGCTGGCCGTCGACACCGTCGTCTCCGTCTTCGTCTCGCT CGTCTGGCTGGCCGCGCTGCGCTCCTTCGTCCGGCCGCTCGTCAGCGTCATCCTGGTGGCCGTGCCCGTCATCAT GCTCTCCTTCTCCCTCTACTCCTTCGTCTCCTCCTTCCAGGGCCGGACGCACGGGTCCAGCCTGCAGGACAGCGT GATGCGGTGGGCCTCGCTCGTCCCGGCCGCCGCCTGCCTGCTCTGGCTGTGGCTCGTCGTCAAGGGGCGGCGGGC GATCCAGCAGGCCATCGAGATCCTGCAGTTCTCGTCCAAGATCCTGGCGCAGAACCCGGGCCTCCTGCTCGTCGG CTTCGGCTGCCTGGCCCTCATCGTGCTCTGGACGTGGGCCTGGCTGGCCATGTTCACGCGCGTCTTCATGGGCGG CTACTTCTCCAAGTCGCTGGTCCGCTTCGTCATCCGCGTCTCGAGCTGGTGGCTGGGCGCGGCCTTCATCCTCAT GTACCTGTGGACGCTGGCCGTCATCAACGCCGTGCACCGGGCGACGACGGCGGCGACGGTGTCGCAGTGGTACTT TCACCGCAACGCCGGGCCGGCCACGCCGTCGCGCGAGATCGTCGCGGCGGCGCTGGGCCACGCGACGACGACCAT CTTCGGCAGCATCTGCCAGTCGACGCTCATGTCGCTGATGCTGCGCGCGCCGCTGCTCTTCCTGCCGCGCAGGAT CGGGCTGGGCCTGACGAACCTGGCGGCCTTTTGGGTGCCGACGCCCATCATCGCGCTGACGAACCCGCTGACGGT GACGTACTCGGCCATCCACTCGCAGTGCCTGGCGACGTCGGCGCGCGGGCTGGACCAGATGGAGGTGGTGTCGCC GGCGATGCCGACGACGACGCTCACGCCGCGGGCCCTGCGCCTGCGCGGGCAGCCCAACCACGGGCTGCTCCCGTA CCGGCTGGCCAAGCTGCTGCTGGTGGCGACGCGCTTCATCATGGCGACGGGGCTGGGCTTCGCCGGCTGGGTCAT CACGGCCAAGCAGCTGCAGATCCAGCTGCCGGACGGCGTGGGGGTGCGCGGCTCGGCGTACGCCTACGTCGTCGG CCTCATGGCCAGCTTCATCGGCTACTCGGTCATGGGGGCCATGGAGGGCATCCTCAGCGGCATCGTCGACGCCGT GCTCATCTGCTACGGCAGCGAGCGGCGCATGGAGCGCGGCCACGGCCGGTTCTGCCTCGAGGCGGCGTACCTGTT TGGCGAGAGGCGGATCGGCGACGAGGCATACGCCTAG |