© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10916 |
| Gene name | |
| Location | Contig_926:5427..6357 |
| Strand | + |
| Gene length (bp) | 930 |
| Transcript length (bp) | 867 |
| Coding sequence length (bp) | 867 |
| Protein length (aa) | 289 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.2309 | 0.0469 | 0.9161 | 0.1801 | 0.0682 | 0.0687 | 0.3124 | 0.1589 | 0.3612 | 0.003 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 26 | 0.976908 |
| Orthofinder run ID | 4 |
| Orthogroup | 4850 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10916 MLRSIAANAGLGLVLILSLVADGAAGLPECSKRDAAEAHCPGVSPGRGGGAADEAAKAGVEKRAAEEDLASCCCP LSQVKVFEPDGPQYKYLECSEGEGSRPSEGTYSRPGEAALKQLAKCRHDSVVYARCPGWEEAKAADDAEQAAKQK GSEQAFADEAASNPKTKDDICLPGQGKSCCCEDKARIRNSDGRCQKIADKNPWSPPATADAFITGRRKDNCSAEG EFGPCCPEWNQFRASHSRGKCTDQDEYHSAANKKDLYLFRTRNGCNGWDLLQEAAQPGFLGFG* |
| Coding | >Hirsu2|10916 ATGTTGCGCTCTATCGCCGCCAACGCCGGTCTCGGACTCGTCCTGATCCTCTCGCTGGTCGCAGACGGCGCAGCT GGCTTGCCCGAGTGCTCGAAGCGGGACGCCGCCGAGGCGCACTGTCCCGGCGTGTCTCCCGGGCGCGGGGGCGGC GCTGCCGACGAGGCCGCCAAGGCCGGCGTCGAGAAGCGCGCCGCCGAGGAGGATCTCGCGTCCTGTTGCTGCCCT CTCAGCCAAGTCAAAGTCTTCGAACCTGACGGTCCTCAATACAAGTACCTGGAGTGTTCCGAGGGCGAGGGCAGC CGGCCTAGCGAGGGCACGTACAGCCGGCCTGGCGAGGCGGCCTTGAAACAGCTCGCAAAGTGCCGCCACGACTCG GTCGTGTACGCCCGGTGTCCCGGCTGGGAGGAAGCCAAGGCCGCCGACGACGCCGAACAGGCGGCCAAACAGAAA GGAAGTGAGCAAGCCTTTGCCGACGAGGCCGCCAGCAACCCCAAGACCAAGGACGACATCTGCCTCCCGGGCCAG GGCAAGAGCTGCTGCTGCGAGGACAAGGCCCGCATCCGCAACAGCGACGGCCGCTGCCAGAAGATCGCCGACAAG AACCCGTGGAGTCCGCCGGCCACGGCCGACGCCTTTATCACAGGGCGGCGGAAGGACAACTGCTCGGCCGAGGGC GAGTTCGGTCCCTGCTGCCCCGAATGGAACCAGTTTCGGGCCAGCCATAGCCGAGGGAAGTGTACGGACCAAGAC GAATATCACTCGGCTGCGAACAAGAAAGATTTGTACCTGTTCCGGACACGCAATGGTTGCAATGGGTGGGATCTT TTACAAGAGGCGGCGCAGCCGGGCTTTCTCGGGTTCGGGTAG |
| Transcript | >Hirsu2|10916 ATGTTGCGCTCTATCGCCGCCAACGCCGGTCTCGGACTCGTCCTGATCCTCTCGCTGGTCGCAGACGGCGCAGCT GGCTTGCCCGAGTGCTCGAAGCGGGACGCCGCCGAGGCGCACTGTCCCGGCGTGTCTCCCGGGCGCGGGGGCGGC GCTGCCGACGAGGCCGCCAAGGCCGGCGTCGAGAAGCGCGCCGCCGAGGAGGATCTCGCGTCCTGTTGCTGCCCT CTCAGCCAAGTCAAAGTCTTCGAACCTGACGGTCCTCAATACAAGTACCTGGAGTGTTCCGAGGGCGAGGGCAGC CGGCCTAGCGAGGGCACGTACAGCCGGCCTGGCGAGGCGGCCTTGAAACAGCTCGCAAAGTGCCGCCACGACTCG GTCGTGTACGCCCGGTGTCCCGGCTGGGAGGAAGCCAAGGCCGCCGACGACGCCGAACAGGCGGCCAAACAGAAA GGAAGTGAGCAAGCCTTTGCCGACGAGGCCGCCAGCAACCCCAAGACCAAGGACGACATCTGCCTCCCGGGCCAG GGCAAGAGCTGCTGCTGCGAGGACAAGGCCCGCATCCGCAACAGCGACGGCCGCTGCCAGAAGATCGCCGACAAG AACCCGTGGAGTCCGCCGGCCACGGCCGACGCCTTTATCACAGGGCGGCGGAAGGACAACTGCTCGGCCGAGGGC GAGTTCGGTCCCTGCTGCCCCGAATGGAACCAGTTTCGGGCCAGCCATAGCCGAGGGAAGTGTACGGACCAAGAC GAATATCACTCGGCTGCGAACAAGAAAGATTTGTACCTGTTCCGGACACGCAATGGTTGCAATGGGTGGGATCTT TTACAAGAGGCGGCGCAGCCGGGCTTTCTCGGGTTCGGGTAG |
| Gene | >Hirsu2|10916 ATGTTGCGCTCTATCGCCGCCAACGCCGGTCTCGGACTCGTCCTGATCCTCTCGCTGGTCGCAGACGGCGCAGCT GGCTTGCCCGAGTGCTCGAAGCGGGACGCCGCCGAGGCGCACTGTCCCGGCGTGTCTCCCGGGCGCGGGGGCGGC GCTGCCGACGAGGCCGCCAAGGCCGGCGTCGAGAAGCGCGCCGCCGAGGAGGATCTCGCGTCCTGGTCCGTGGGA TGCATCTGGAACGGTTCCCATGTTATCCCTGACCAAGATGAACGATCAAACAGTTGCTGCCCTCTCAGCCAAGTC AAAGTCTTCGAACCTGACGGTCCTCAATACAAGTACCTGGAGTGTTCCGAGGGCGAGGGCAGCCGGCCTAGCGAG GGCACGTACAGCCGGCCTGGCGAGGCGGCCTTGAAACAGCTCGCAAAGTGCCGCCACGACTCGGTCGTGTACGCC CGGTGTCCCGGCTGGGAGGAAGCCAAGGCCGCCGACGACGCCGAACAGGCGGCCAAACAGAAAGGAAGTGAGCAA GCCTTTGCCGACGAGGCCGCCAGCAACCCCAAGACCAAGGACGACATCTGCCTCCCGGGCCAGGGCAAGAGCTGC TGCTGCGAGGACAAGGCCCGCATCCGCAACAGCGACGGCCGCTGCCAGAAGATCGCCGACAAGAACCCGTGGAGT CCGCCGGCCACGGCCGACGCCTTTATCACAGGGCGGCGGAAGGACAACTGCTCGGCCGAGGGCGAGTTCGGTCCC TGCTGCCCCGAATGGAACCAGTTTCGGGCCAGCCATAGCCGAGGGAAGTGTACGGACCAAGACGAATATCACTCG GCTGCGAACAAGAAAGATTTGTACCTGTTCCGGACACGCAATGGTTGCAATGGGTGGGATCTTTTACAAGAGGCG GCGCAGCCGGGCTTTCTCGGGTTCGGGTAG |