© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10914 |
| Gene name | |
| Location | Contig_926:2012..3043 |
| Strand | + |
| Gene length (bp) | 1031 |
| Transcript length (bp) | 882 |
| Coding sequence length (bp) | 882 |
| Protein length (aa) | 294 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.5E-09 | 18 | 82 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.2E-08 | 154 | 231 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9ZUU4|CP29B_ARATH | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1 | 2 | 240 | 3.0E-08 |
| sp|Q00539|NAM8_YEAST | Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAM8 PE=1 SV=2 | 18 | 237 | 5.0E-08 |
| sp|Q39061|CP33_ARATH | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1 | 9 | 236 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.5791 | 0.695 | 0.0268 | 0.057 | 0.1184 | 0.0105 | 0.132 | 0.0093 | 0.0171 | 0.0007 |
| Orthofinder run ID | 4 |
| Orthogroup | 1419 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10914 MDSAPQGQSDASSEGRRIYLGNLSYTVKPSEIEEMLAANGFDQIESIHISIDPVSAKCPGYCFIDFADRATADLA LGSLRGSIDGRPIKVGPCEPKKPRTRRWGNDDSPVFQRWGNWGSRPGDGRDGGKRIEQGPHGALDHFDDMVHGSE GRRLFVGGLGKMIDQAHNTREIKEIFAGFNPTAIGKRITPHESLRGKPGNHHYCFVDFETREETEAAIKALDGKP FEGGKLKVSPARKTPDKLTERQTDGRRTHDRGSSHREGSAAAAAAATTTTTGKAMASSNWRRKDDDTK* |
| Coding | >Hirsu2|10914 ATGGACTCGGCGCCGCAGGGCCAGTCGGACGCCTCGTCCGAGGGCCGCCGCATCTACCTAGGCAACCTGTCGTAC ACGGTCAAGCCGTCCGAGATCGAGGAGATGTTGGCGGCCAACGGGTTCGACCAGATCGAGAGCATCCACATCTCC ATCGACCCCGTCAGCGCCAAGTGCCCCGGCTACTGCTTCATCGACTTCGCCGACCGCGCGACCGCCGACCTCGCC CTCGGCTCCCTGCGCGGCTCCATCGACGGCCGGCCGATCAAGGTCGGCCCCTGCGAGCCCAAGAAGCCGCGCACG CGGCGCTGGGGCAACGACGACAGCCCCGTCTTCCAGCGATGGGGCAACTGGGGCTCCCGGCCCGGCGACGGCCGC GATGGCGGCAAGAGGATCGAGCAGGGCCCGCACGGCGCCCTCGACCACTTCGACGACATGGTGCACGGCTCCGAG GGCCGCAGGCTCTTCGTCGGCGGGCTCGGCAAGATGATTGACCAGGCCCACAACACGCGCGAGATCAAGGAGATC TTTGCCGGCTTCAACCCGACCGCCATCGGCAAGCGCATCACGCCGCACGAGAGCCTGAGAGGGAAGCCGGGCAAT CACCACTACTGCTTCGTCGACTTCGAGACGCGGGAGGAGACGGAGGCGGCCATCAAGGCCCTGGACGGCAAGCCC TTCGAGGGCGGCAAGCTCAAGGTCTCGCCGGCGCGCAAGACGCCAGACAAGCTGACGGAGCGCCAGACGGACGGC CGCCGGACGCACGACCGGGGCTCGTCCCATCGGGAGGGCTCGGCGGCGGCGGCGGCGGCGGCGACGACGACGACG ACGGGCAAGGCCATGGCCTCGAGCAACTGGCGCAGGAAAGACGACGACACGAAGTGA |
| Transcript | >Hirsu2|10914 ATGGACTCGGCGCCGCAGGGCCAGTCGGACGCCTCGTCCGAGGGCCGCCGCATCTACCTAGGCAACCTGTCGTAC ACGGTCAAGCCGTCCGAGATCGAGGAGATGTTGGCGGCCAACGGGTTCGACCAGATCGAGAGCATCCACATCTCC ATCGACCCCGTCAGCGCCAAGTGCCCCGGCTACTGCTTCATCGACTTCGCCGACCGCGCGACCGCCGACCTCGCC CTCGGCTCCCTGCGCGGCTCCATCGACGGCCGGCCGATCAAGGTCGGCCCCTGCGAGCCCAAGAAGCCGCGCACG CGGCGCTGGGGCAACGACGACAGCCCCGTCTTCCAGCGATGGGGCAACTGGGGCTCCCGGCCCGGCGACGGCCGC GATGGCGGCAAGAGGATCGAGCAGGGCCCGCACGGCGCCCTCGACCACTTCGACGACATGGTGCACGGCTCCGAG GGCCGCAGGCTCTTCGTCGGCGGGCTCGGCAAGATGATTGACCAGGCCCACAACACGCGCGAGATCAAGGAGATC TTTGCCGGCTTCAACCCGACCGCCATCGGCAAGCGCATCACGCCGCACGAGAGCCTGAGAGGGAAGCCGGGCAAT CACCACTACTGCTTCGTCGACTTCGAGACGCGGGAGGAGACGGAGGCGGCCATCAAGGCCCTGGACGGCAAGCCC TTCGAGGGCGGCAAGCTCAAGGTCTCGCCGGCGCGCAAGACGCCAGACAAGCTGACGGAGCGCCAGACGGACGGC CGCCGGACGCACGACCGGGGCTCGTCCCATCGGGAGGGCTCGGCGGCGGCGGCGGCGGCGGCGACGACGACGACG ACGGGCAAGGCCATGGCCTCGAGCAACTGGCGCAGGAAAGACGACGACACGAAGTGA |
| Gene | >Hirsu2|10914 ATGGACTCGGCGCCGCAGGGCCAGTCGGACGCCTCGTCCGAGGGCCGCCGCATCTACCTAGGTGTGCCCGGCCTC GTGCTCCCCCGTCCCGCAGCCCTCCCGCGCCGCCGTCGGAGCTGACGCGTCGCATCGTGGCCAGGCAACCTGTCG TACACGGTCAAGCCGTCCGAGATCGAGGAGATGTTGGCGGCCAACGGGTTCGACCAGATCGAGAGCATCCACATC TCCATCGACCCCGTCAGCGCCAAGTGCCCCGGCTACTGCTTCATCGACTTCGCCGACCGCGCGACCGCCGACCTC GCCCTCGGCTCCCTGCGCGGCTCCATCGACGGCCGGCCGATCAAGGTCGGCCCCTGCGAGCCCAAGAAGCCGCGC ACGCGGCGCTGGGGCAACGACGACAGCCCCGTCTTCCAGCGATGGGGCAACTGGGGCTCCCGGCCCGGCGACGGC CGCGATGGCGGCAAGAGGATCGAGCAGGGCCCGCACGGCGCCCTCGACCACTTCGACGACATGGTGCACGGCTCC GAGGGCCGCAGGCTCTTCGTCGGCGGGCTCGGCAAGATGATTGACCAGGCCCACAACACGCGCGAGATCAAGGAG ATCTTTGCCGGCTTCAACCCGTGCGTACAAATGGACCAGTGAACGAATGGTCGGCCCGGCTTTTACTGACCGAGA GGGGGAACGCTGCCAGGACCGCCATCGGCAAGCGCATCACGCCGCACGAGAGCCTGAGAGGGAAGCCGGGCAATC ACCACTACTGCTTCGTCGACTTCGAGACGCGGGAGGAGACGGAGGCGGCCATCAAGGCCCTGGACGGCAAGCCCT TCGAGGGCGGCAAGCTCAAGGTCTCGCCGGCGCGCAAGACGCCAGACAAGCTGACGGAGCGCCAGACGGACGGCC GCCGGACGCACGACCGGGGCTCGTCCCATCGGGAGGGCTCGGCGGCGGCGGCGGCGGCGGCGACGACGACGACGA CGGGCAAGGCCATGGCCTCGAGCAACTGGCGCAGGAAAGACGACGACACGAAGTGA |