© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10903 |
| Gene name | |
| Location | Contig_923:4789..5582 |
| Strand | - |
| Gene length (bp) | 793 |
| Transcript length (bp) | 696 |
| Coding sequence length (bp) | 696 |
| Protein length (aa) | 232 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04588 | HIG_1_N | Hypoxia induced protein conserved region | 4.4E-06 | 118 | 162 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P3B2|RCF2_SCHPO | Respiratory supercomplex factor 2 homolog C1565.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rcf2 PE=3 SV=1 | 1 | 221 | 3.0E-26 |
| sp|P53721|RCF2_YEAST | Respiratory supercomplex factor 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCF2 PE=1 SV=1 | 1 | 168 | 2.0E-16 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 61 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 116 | 135 | 19 |
| 3 | 145 | 167 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10903 MKVLSKEEEEAHYSAVVKGGLIGGSAGLALGVGGVVLATRRYPAFRGLTVPFRAFLVTSSGTFGAIVNADRYSVK FQRAQHPESQYKDASARAQQMIRENETAYQRFLEWGRDNRYGIVFASWVASMGIALALVSRAPMSTSQKVVQARV YAQGLTLVVLVVSAIFEMNDANNGDGRWKTIMVVDPNDPEHKHMIEKRVHKEEYEGQDLWKDMVEAEERRLAAKK ASIEKA* |
| Coding | >Hirsu2|10903 ATGAAGGTCCTCAGCAAGGAAGAGGAGGAGGCGCACTACTCGGCCGTCGTCAAGGGCGGCCTGATCGGCGGCTCG GCCGGCCTCGCCCTCGGCGTCGGCGGCGTCGTCTTGGCCACGCGCCGCTACCCGGCCTTTCGCGGCCTGACGGTG CCCTTCCGGGCCTTCCTCGTCACCTCGAGCGGCACCTTCGGCGCCATCGTCAACGCCGACCGCTACAGCGTCAAG TTCCAGCGCGCCCAGCACCCCGAGAGCCAGTACAAGGATGCCAGCGCCCGCGCGCAGCAGATGATCCGCGAGAAC GAGACGGCCTACCAGCGCTTCCTCGAGTGGGGCCGCGACAACCGCTACGGCATCGTCTTCGCCTCCTGGGTCGCC AGCATGGGCATCGCCCTCGCCCTCGTCAGCCGCGCCCCCATGAGCACCTCGCAAAAGGTCGTCCAGGCCCGTGTC TACGCCCAGGGCCTGACCCTCGTCGTCCTCGTCGTCTCCGCCATCTTCGAGATGAACGACGCCAACAACGGCGAC GGCCGCTGGAAGACCATCATGGTCGTCGACCCCAACGACCCCGAGCACAAGCACATGATTGAGAAGAGAGTCCAC AAGGAGGAATACGAGGGCCAGGATCTCTGGAAAGACATGGTCGAAGCCGAGGAACGACGGTTGGCGGCCAAGAAG GCCTCGATTGAGAAGGCATAA |
| Transcript | >Hirsu2|10903 ATGAAGGTCCTCAGCAAGGAAGAGGAGGAGGCGCACTACTCGGCCGTCGTCAAGGGCGGCCTGATCGGCGGCTCG GCCGGCCTCGCCCTCGGCGTCGGCGGCGTCGTCTTGGCCACGCGCCGCTACCCGGCCTTTCGCGGCCTGACGGTG CCCTTCCGGGCCTTCCTCGTCACCTCGAGCGGCACCTTCGGCGCCATCGTCAACGCCGACCGCTACAGCGTCAAG TTCCAGCGCGCCCAGCACCCCGAGAGCCAGTACAAGGATGCCAGCGCCCGCGCGCAGCAGATGATCCGCGAGAAC GAGACGGCCTACCAGCGCTTCCTCGAGTGGGGCCGCGACAACCGCTACGGCATCGTCTTCGCCTCCTGGGTCGCC AGCATGGGCATCGCCCTCGCCCTCGTCAGCCGCGCCCCCATGAGCACCTCGCAAAAGGTCGTCCAGGCCCGTGTC TACGCCCAGGGCCTGACCCTCGTCGTCCTCGTCGTCTCCGCCATCTTCGAGATGAACGACGCCAACAACGGCGAC GGCCGCTGGAAGACCATCATGGTCGTCGACCCCAACGACCCCGAGCACAAGCACATGATTGAGAAGAGAGTCCAC AAGGAGGAATACGAGGGCCAGGATCTCTGGAAAGACATGGTCGAAGCCGAGGAACGACGGTTGGCGGCCAAGAAG GCCTCGATTGAGAAGGCATAA |
| Gene | >Hirsu2|10903 ATGAAGGTCCTCAGCAAGGAAGAGGAGGAGGCGCACTACTCGGCCGTCGTCAAGGGCGGCCTGATCGGCGGCTCG GCCGGCCTCGCCCTCGGCGTCGGCGGCGTCGTCTTGGCCACGCGCCGCTACCCGGCCTTTCGCGGCCTGACGGTG CCCTTCCGGGCCTTCCTCGTCACCTCGAGCGGCACCTTCGGCGCCATCGTCAACGCCGACCGCTACAGCGTCAAG TTCCAGCGCGCCCAGCACCCCGAGAGCCAGTACAAGGATGCCAGCGCCCGCGCGCAGCAGATGATCCGCGAGAAC GAGACGGCCTACCAGCGCTTCCTCGAGTGGGGCCGCGACAACCGCTACGGCATCGTCTTCGCCTCCTGGGTCGCC AGCATGGGCATCGCCCTCGCCCTCGTCAGCCGCGCCCCCATGAGCACCTCGCAAAAGGTCGTCCAGGCCCGTGTC TACGCCCAGGGCCTGACCCTCGTCGTCCTCGTCGTCTCCGCCATCTTCGAGATGAACGACGCCAACAACGGCGAC GGCCGCTGGAAGACCATCATGGTCGTCGACCCCAACGACCCCGAGCACAAGCACATGATTGAGAAGAGAGTCCAC AAGGAGGAATACGAGGGCCAGGATCTCTGGAAAGGTACCGTCTCCCACCCGTTGCACGGCCAATACCTACTACCT ACCACTCTACTACCACTGTCAACCTGTGCTGACCCTGTGCCCCGCCCTGCCTCCAGACATGGTCGAAGCCGAGGA ACGACGGTTGGCGGCCAAGAAGGCCTCGATTGAGAAGGCATAA |