© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1089 |
| Gene name | |
| Location | Contig_1229:3908..4730 |
| Strand | + |
| Gene length (bp) | 822 |
| Transcript length (bp) | 678 |
| Coding sequence length (bp) | 678 |
| Protein length (aa) | 226 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09802 | Sec66 | Preprotein translocase subunit Sec66 | 3.0E-77 | 7 | 188 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UUA4|SEC66_SCHPO | Translocation protein sec66 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec66 PE=1 SV=1 | 9 | 183 | 3.0E-32 |
| sp|P33754|SEC66_YEAST | Translocation protein SEC66 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC66 PE=1 SV=1 | 12 | 180 | 5.0E-19 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0031204 | post-translational protein targeting to membrane, translocation | Yes |
| GO:0031207 | Sec62/Sec63 complex | Yes |
| GO:0032991 | protein-containing complex | No |
| GO:0098796 | membrane protein complex | No |
| GO:0051179 | localization | No |
| GO:0065002 | intracellular protein transmembrane transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0071702 | organic substance transport | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0051641 | cellular localization | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0009987 | cellular process | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0008104 | protein localization | No |
| GO:0033036 | macromolecule localization | No |
| GO:0071806 | protein transmembrane transport | No |
| GO:0006886 | intracellular protein transport | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| GO:0046907 | intracellular transport | No |
| GO:0006810 | transport | No |
| GO:0005575 | cellular_component | No |
| GO:0015031 | protein transport | No |
| GO:0055085 | transmembrane transport | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | 0.2333 | 0.2768 | 0.2168 | 0.0686 | 0.5109 | 0.0198 | 0.7039 | 0.1415 | 0.4355 | 0.1023 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 30 | 20 |
| Orthofinder run ID | 4 |
| Orthogroup | 1404 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1089 MFGVDWKGLALPFAYLLVLGGALMTFSTIYRKRKAAESANLAPWFGPNLQRNVYLSLLHMEPQDGQSKSPRVPDG VLRAALLRRAVQDIERLIAIKSAKQACSTLLLRGSVGDDLWQRFQRAEKEMEEELRDVVTEANALAPNWGPTIFQ SAHEIAANTKLRQRLDEIQAQTESEKQWWEKRRGQIQSDFMKELDDSEKSSTKATSEDDAVLIDTPGKSGKKGKK * |
| Coding | >Hirsu2|1089 ATGTTCGGAGTCGATTGGAAGGGCCTCGCCCTTCCCTTTGCATACCTGCTCGTCCTCGGCGGCGCCCTCATGACT TTTTCGACCATCTACCGCAAGCGAAAAGCCGCCGAGAGCGCGAACCTGGCGCCCTGGTTCGGGCCCAACCTGCAG CGCAACGTCTACCTGTCGCTGCTGCACATGGAGCCCCAGGACGGCCAGAGCAAGTCGCCGCGCGTGCCCGACGGC GTCCTGCGCGCCGCGCTGCTGCGCCGCGCCGTCCAGGACATCGAGCGCCTCATCGCCATCAAGTCGGCCAAGCAG GCCTGCAGCACCCTGCTGCTGCGCGGCAGCGTCGGCGACGACCTGTGGCAGCGCTTCCAGCGCGCCGAGAAGGAG ATGGAGGAGGAGCTGCGAGACGTCGTCACCGAGGCCAACGCCCTGGCCCCCAACTGGGGCCCGACCATCTTCCAG TCGGCGCACGAGATCGCCGCCAACACCAAGCTCCGCCAACGGCTCGACGAGATCCAGGCCCAGACCGAGTCGGAG AAGCAGTGGTGGGAGAAGCGCCGGGGCCAGATCCAGAGCGACTTCATGAAGGAGCTCGACGACTCGGAAAAGAGC TCGACCAAGGCCACGAGCGAGGACGACGCCGTCCTCATCGACACGCCCGGCAAGAGCGGCAAGAAAGGCAAGAAA TAG |
| Transcript | >Hirsu2|1089 ATGTTCGGAGTCGATTGGAAGGGCCTCGCCCTTCCCTTTGCATACCTGCTCGTCCTCGGCGGCGCCCTCATGACT TTTTCGACCATCTACCGCAAGCGAAAAGCCGCCGAGAGCGCGAACCTGGCGCCCTGGTTCGGGCCCAACCTGCAG CGCAACGTCTACCTGTCGCTGCTGCACATGGAGCCCCAGGACGGCCAGAGCAAGTCGCCGCGCGTGCCCGACGGC GTCCTGCGCGCCGCGCTGCTGCGCCGCGCCGTCCAGGACATCGAGCGCCTCATCGCCATCAAGTCGGCCAAGCAG GCCTGCAGCACCCTGCTGCTGCGCGGCAGCGTCGGCGACGACCTGTGGCAGCGCTTCCAGCGCGCCGAGAAGGAG ATGGAGGAGGAGCTGCGAGACGTCGTCACCGAGGCCAACGCCCTGGCCCCCAACTGGGGCCCGACCATCTTCCAG TCGGCGCACGAGATCGCCGCCAACACCAAGCTCCGCCAACGGCTCGACGAGATCCAGGCCCAGACCGAGTCGGAG AAGCAGTGGTGGGAGAAGCGCCGGGGCCAGATCCAGAGCGACTTCATGAAGGAGCTCGACGACTCGGAAAAGAGC TCGACCAAGGCCACGAGCGAGGACGACGCCGTCCTCATCGACACGCCCGGCAAGAGCGGCAAGAAAGGCAAGAAA TAG |
| Gene | >Hirsu2|1089 ATGTTCGGAGTCGATTGGAAGGGCCTCGCCCTTCCCTTTGCATACCTGCTCGTCCTCGGCGGCGCCCTCATGACT TTTTCGACCATCTACCGCAAGCGAAAAGCCGGTAACGTCACCCAAACGGCCCCCCCCTCTCCGGCAGGAGGAGAA AGGGCACCGTGCCACGACTGACGCGAAAACACGCTTCCAGCCGAGAGCGCGAACCTGGCGCCCTGGTTCGGGCCC AACCTGCAGCGCAACGTCTACCTGTCGCTGCTGCACATGGAGCCCCAGGACGGCCAGAGCAAGTCGCCGCGCGTG CCCGACGGCGTCCTGCGCGCCGCGCTGCTGCGCCGCGCCGTCCAGGACATCGAGCGCCTCATCGCCATCAAGTCG GCCAAGCAGGCCTGCAGCACCCTGCTGCTGCGCGGCAGCGTCGGCGACGACCTGTGGCAGCGCTTCCAGCGCGCC GAGAAGGAGATGGAGGAGGAGCTGCGAGACGTCGTCACCGAGGTAAGCCATTGCCTCTCTCCCCTCTCGGACCCA GTTCGCTGACCAGAGGCCGCGTCGCAGGCCAACGCCCTGGCCCCCAACTGGGGCCCGACCATCTTCCAGTCGGCG CACGAGATCGCCGCCAACACCAAGCTCCGCCAACGGCTCGACGAGATCCAGGCCCAGACCGAGTCGGAGAAGCAG TGGTGGGAGAAGCGCCGGGGCCAGATCCAGAGCGACTTCATGAAGGAGCTCGACGACTCGGAAAAGAGCTCGACC AAGGCCACGAGCGAGGACGACGCCGTCCTCATCGACACGCCCGGCAAGAGCGGCAAGAAAGGCAAGAAATAG |