© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10888 |
| Gene name | |
| Location | Contig_920:1677..2925 |
| Strand | - |
| Gene length (bp) | 1248 |
| Transcript length (bp) | 849 |
| Coding sequence length (bp) | 849 |
| Protein length (aa) | 283 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03661 | TMEM33_Pom33 | Transmembrane protein 33/Nucleoporin POM33 | 1.6E-29 | 18 | 257 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|G0S6T0|POM33_CHATD | Nucleoporin POM33 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=POM33 PE=3 SV=1 | 3 | 282 | 3.0E-122 |
| sp|Q12164|POM33_YEAST | Pore membrane protein of 33 kDa OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POM33 PE=1 SV=1 | 5 | 256 | 7.0E-37 |
| sp|Q9Y7Z5|TTS1_SCHPO | Tetra-spanning protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tts1 PE=1 SV=1 | 1 | 262 | 3.0E-31 |
| sp|Q12144|PER33_YEAST | Pore and endoplasmic reticulum protein of 33 kDa OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PER33 PE=1 SV=1 | 23 | 257 | 3.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 24 | 43 | 19 |
| 2 | 56 | 73 | 17 |
| 3 | 106 | 128 | 22 |
| 4 | 180 | 199 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10888 MAPQPNSSMPLQERLLALAKTLQFAWFVGHLTLIMATFRYSFSWLRMNYYGSMAQFSYRTSFVAAAATYGIVVYK TQRARAKTGARMSGGAVGLLADENVQYLLMALVWLLSPQYPLALLPYCVYSVFHVATYTRANLIPVFQPPPPAAE GAAARPKVNSRLADQIGVFVKEYYDTSMSIVSGLELLLWFRVVLAAILFQRRSWILFGLYTAFLRARFSQSSHVQ NSVSQLGARIDSLVGAQGTPPAARQIWANIKNGARQFHDATDMGKYVSSSGPAKKTS* |
| Coding | >Hirsu2|10888 ATGGCTCCTCAACCCAACTCGAGCATGCCGCTTCAGGAGCGGCTTCTGGCCCTGGCCAAGACGCTGCAGTTCGCC TGGTTTGTTGGCCACCTGACGCTCATCATGGCCACCTTTCGCTACAGCTTCTCCTGGCTGCGCATGAACTACTAC GGCAGCATGGCCCAGTTCTCCTATCGCACCTCGTTCGTCGCCGCCGCCGCCACGTACGGCATCGTCGTCTACAAG ACGCAGCGCGCCCGCGCAAAGACGGGGGCCAGGATGTCGGGCGGTGCCGTGGGCCTCCTTGCCGACGAAAACGTG CAGTATCTTCTCATGGCCCTTGTCTGGCTCCTCTCTCCCCAGTACCCCCTGGCGCTGCTGCCTTACTGCGTCTAT TCCGTCTTCCACGTCGCCACCTACACGCGCGCCAACCTGATTCCCGTCTTCCAGCCGCCGCCGCCCGCCGCCGAG GGCGCCGCGGCTCGGCCCAAGGTGAACAGCCGGCTGGCGGACCAGATCGGCGTCTTCGTCAAGGAGTACTACGAC ACGTCCATGTCCATCGTCTCGGGCCTGGAGCTCCTGCTGTGGTTCCGCGTCGTGCTCGCCGCCATCCTCTTCCAA CGTAGGTCGTGGATCCTGTTTGGCCTCTACACGGCGTTCCTGCGCGCGCGCTTCTCCCAGAGCTCGCACGTCCAG AACTCGGTATCGCAGCTCGGCGCCCGGATCGACTCGCTCGTCGGCGCGCAGGGCACGCCCCCGGCCGCCCGGCAG ATCTGGGCCAACATCAAGAACGGGGCCAGGCAGTTCCACGACGCGACCGACATGGGCAAGTACGTCAGCAGCAGC GGCCCCGCCAAGAAGACCTCGTAA |
| Transcript | >Hirsu2|10888 ATGGCTCCTCAACCCAACTCGAGCATGCCGCTTCAGGAGCGGCTTCTGGCCCTGGCCAAGACGCTGCAGTTCGCC TGGTTTGTTGGCCACCTGACGCTCATCATGGCCACCTTTCGCTACAGCTTCTCCTGGCTGCGCATGAACTACTAC GGCAGCATGGCCCAGTTCTCCTATCGCACCTCGTTCGTCGCCGCCGCCGCCACGTACGGCATCGTCGTCTACAAG ACGCAGCGCGCCCGCGCAAAGACGGGGGCCAGGATGTCGGGCGGTGCCGTGGGCCTCCTTGCCGACGAAAACGTG CAGTATCTTCTCATGGCCCTTGTCTGGCTCCTCTCTCCCCAGTACCCCCTGGCGCTGCTGCCTTACTGCGTCTAT TCCGTCTTCCACGTCGCCACCTACACGCGCGCCAACCTGATTCCCGTCTTCCAGCCGCCGCCGCCCGCCGCCGAG GGCGCCGCGGCTCGGCCCAAGGTGAACAGCCGGCTGGCGGACCAGATCGGCGTCTTCGTCAAGGAGTACTACGAC ACGTCCATGTCCATCGTCTCGGGCCTGGAGCTCCTGCTGTGGTTCCGCGTCGTGCTCGCCGCCATCCTCTTCCAA CGTAGGTCGTGGATCCTGTTTGGCCTCTACACGGCGTTCCTGCGCGCGCGCTTCTCCCAGAGCTCGCACGTCCAG AACTCGGTATCGCAGCTCGGCGCCCGGATCGACTCGCTCGTCGGCGCGCAGGGCACGCCCCCGGCCGCCCGGCAG ATCTGGGCCAACATCAAGAACGGGGCCAGGCAGTTCCACGACGCGACCGACATGGGCAAGTACGTCAGCAGCAGC GGCCCCGCCAAGAAGACCTCGTAA |
| Gene | >Hirsu2|10888 ATGGCTCCTCAACCCAACTCGAGCATGCCGCTTCAGGAGCGGCTTCTGGCCCTGGCCAAGACGCTGCAGTGTACG AGCTTGTCCCCCTTGCCTTGCGAGCCCGGCTTTTGCCTGTTGCTAACGTTGCCTCTGCCCCGCCTGCAGTCGCCT GGTTTGTTGGGTGCGTTGCCGTCCATTCTGTTCCCGCTGTCGGGAGCTGCGCCGTCACCTTGGGTTGGGGCCGCG GCTGCAGATACCGACGGACCTCTCGCCCTGCCCATGAGCTTGTGTCGCTGACGCTTCCCGGCTTCTAAACAGCCA CCTGACGCTCATCATGGCCACCTTTCGCTACAGCTTCTCCTGGCTGCGCATGAACTACTACGGCAGCATGGCCCA GTTCTCCTATCGCACCTCGTTCGTCGCCGCCGCCGCCACGTACGGCATCGTCGTCTACAAGACGCAGCGCGCCCG CGCAAAGACGGGGGCCAGGATGTCGGGCGGTGCCGTGGGCCTCCTTGCCGACGAAAACGTGCAGTATCTTCGTAC GTCAATCGCTCCTCCCGTTCCCTCCTTTGACCTCTCTCGCTCTCGGGGACGGCTTCGTCGCGGCAGAGGAACCTG AGTCTCTCCCGCGATGGCTTCGTCCCGGCAGAGGAACCGGAGAGCAGTGTACCCCCCGCTGTCTGCCGCCCGCCG TCACTGACTCGACGCCCTCGTTCCTCACGCGCAGTCATGGCCCTTGTCTGGCTCCTCTCTCCCCAGTACCCCCTG GCGCTGCTGCCTTACTGCGTCTATTCCGTCTTCCACGTCGCCACCTACACGCGCGCCAACCTGATTCCCGTCTTC CAGCCGCCGCCGCCCGCCGCCGAGGGCGCCGCGGCTCGGCCCAAGGTGAACAGCCGGCTGGCGGACCAGATCGGC GTCTTCGTCAAGGAGTACTACGACACGTCCATGTCCATCGTCTCGGGCCTGGAGCTCCTGCTGTGGTTCCGCGTC GTGCTCGCCGCCATCCTCTTCCAACGTAGGTCGTGGATCCTGTTTGGCCTCTACACGGCGTTCCTGCGCGCGCGC TTCTCCCAGAGCTCGCACGTCCAGAACTCGGTATCGCAGCTCGGCGCCCGGATCGACTCGCTCGTCGGCGCGCAG GGCACGCCCCCGGCCGCCCGGCAGATCTGGGCCAACATCAAGAACGGGGCCAGGCAGTTCCACGACGCGACCGAC ATGGGCAAGTACGTCAGCAGCAGCGGCCCCGCCAAGAAGACCTCGTAA |