© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10885 |
| Gene name | |
| Location | Contig_92:35754..36654 |
| Strand | + |
| Gene length (bp) | 900 |
| Transcript length (bp) | 900 |
| Coding sequence length (bp) | 900 |
| Protein length (aa) | 300 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF18142 | SLATT_fungal | SMODS and SLOG-associating 2TM effector domain | 5.1E-27 | 114 | 222 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 119 | 141 | 22 |
| 2 | 151 | 173 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10885 MNKYSKPLDLPILPPVPVTRNSGDDARKGKRVEQGSKQPSDTLDQHFQAHGHHRVARHRFLTPAEWSKIANGVGG VRDAESHKPARPSSWWWPPRGMPEGLYRDVVTCRIKFYCVFHAISILRWVLMISQLLVGAAVTSLGSMSMRVGTP ITILGAINTVIAGILALMHNSGLPDRYRYDMGQFEEIEDHIKELLDSAIAPADLTTDQILAECFDLFREAKATVA ANMPVNYNSRQVLQGRNTQNVVMLPSAPPPPPLSPPPPGPATATVVTSKANAALSEVNQQQPAPEGSGGTSDKL* |
| Coding | >Hirsu2|10885 ATGAACAAATACTCCAAGCCGCTCGACCTCCCCATCCTGCCTCCTGTCCCCGTGACTCGCAATTCCGGGGACGAC GCGAGGAAAGGAAAACGGGTTGAACAGGGGTCCAAGCAGCCGAGTGACACCTTAGACCAGCATTTCCAGGCACAC GGGCATCACCGAGTGGCTCGCCACAGATTCCTGACGCCCGCAGAGTGGTCCAAGATTGCCAACGGGGTCGGCGGC GTTCGCGATGCCGAGAGTCACAAGCCGGCCCGTCCCTCGAGCTGGTGGTGGCCGCCTCGGGGCATGCCGGAGGGC CTCTACCGCGACGTTGTGACGTGCAGGATCAAGTTCTACTGCGTCTTTCACGCCATAAGCATCCTTCGCTGGGTG CTCATGATCTCCCAGCTGCTGGTCGGTGCGGCCGTCACGTCGCTCGGGTCTATGTCGATGCGAGTCGGGACGCCC ATCACGATCCTGGGGGCCATCAACACGGTAATAGCTGGCATCCTGGCCCTTATGCACAACAGTGGATTGCCTGAT CGCTATCGGTATGACATGGGCCAGTTCGAGGAAATCGAGGACCACATCAAGGAGCTTCTCGACTCTGCCATTGCC CCGGCCGACCTGACAACCGACCAGATCCTCGCCGAGTGCTTCGATTTGTTCCGCGAGGCCAAGGCCACCGTCGCC GCCAACATGCCGGTCAACTACAATTCTCGACAGGTTCTGCAAGGTAGAAACACGCAGAACGTAGTCATGTTGCCC TCTGCGCCACCACCGCCGCCGCTGTCGCCGCCGCCGCCAGGCCCGGCCACGGCAACAGTGGTGACGTCCAAGGCG AATGCTGCCCTGAGCGAGGTCAATCAGCAACAGCCAGCTCCTGAAGGTAGCGGTGGCACGAGTGATAAATTATGA |
| Transcript | >Hirsu2|10885 ATGAACAAATACTCCAAGCCGCTCGACCTCCCCATCCTGCCTCCTGTCCCCGTGACTCGCAATTCCGGGGACGAC GCGAGGAAAGGAAAACGGGTTGAACAGGGGTCCAAGCAGCCGAGTGACACCTTAGACCAGCATTTCCAGGCACAC GGGCATCACCGAGTGGCTCGCCACAGATTCCTGACGCCCGCAGAGTGGTCCAAGATTGCCAACGGGGTCGGCGGC GTTCGCGATGCCGAGAGTCACAAGCCGGCCCGTCCCTCGAGCTGGTGGTGGCCGCCTCGGGGCATGCCGGAGGGC CTCTACCGCGACGTTGTGACGTGCAGGATCAAGTTCTACTGCGTCTTTCACGCCATAAGCATCCTTCGCTGGGTG CTCATGATCTCCCAGCTGCTGGTCGGTGCGGCCGTCACGTCGCTCGGGTCTATGTCGATGCGAGTCGGGACGCCC ATCACGATCCTGGGGGCCATCAACACGGTAATAGCTGGCATCCTGGCCCTTATGCACAACAGTGGATTGCCTGAT CGCTATCGGTATGACATGGGCCAGTTCGAGGAAATCGAGGACCACATCAAGGAGCTTCTCGACTCTGCCATTGCC CCGGCCGACCTGACAACCGACCAGATCCTCGCCGAGTGCTTCGATTTGTTCCGCGAGGCCAAGGCCACCGTCGCC GCCAACATGCCGGTCAACTACAATTCTCGACAGGTTCTGCAAGGTAGAAACACGCAGAACGTAGTCATGTTGCCC TCTGCGCCACCACCGCCGCCGCTGTCGCCGCCGCCGCCAGGCCCGGCCACGGCAACAGTGGTGACGTCCAAGGCG AATGCTGCCCTGAGCGAGGTCAATCAGCAACAGCCAGCTCCTGAAGGTAGCGGTGGCACGAGTGATAAATTATGA |
| Gene | >Hirsu2|10885 ATGAACAAATACTCCAAGCCGCTCGACCTCCCCATCCTGCCTCCTGTCCCCGTGACTCGCAATTCCGGGGACGAC GCGAGGAAAGGAAAACGGGTTGAACAGGGGTCCAAGCAGCCGAGTGACACCTTAGACCAGCATTTCCAGGCACAC GGGCATCACCGAGTGGCTCGCCACAGATTCCTGACGCCCGCAGAGTGGTCCAAGATTGCCAACGGGGTCGGCGGC GTTCGCGATGCCGAGAGTCACAAGCCGGCCCGTCCCTCGAGCTGGTGGTGGCCGCCTCGGGGCATGCCGGAGGGC CTCTACCGCGACGTTGTGACGTGCAGGATCAAGTTCTACTGCGTCTTTCACGCCATAAGCATCCTTCGCTGGGTG CTCATGATCTCCCAGCTGCTGGTCGGTGCGGCCGTCACGTCGCTCGGGTCTATGTCGATGCGAGTCGGGACGCCC ATCACGATCCTGGGGGCCATCAACACGGTAATAGCTGGCATCCTGGCCCTTATGCACAACAGTGGATTGCCTGAT CGCTATCGGTATGACATGGGCCAGTTCGAGGAAATCGAGGACCACATCAAGGAGCTTCTCGACTCTGCCATTGCC CCGGCCGACCTGACAACCGACCAGATCCTCGCCGAGTGCTTCGATTTGTTCCGCGAGGCCAAGGCCACCGTCGCC GCCAACATGCCGGTCAACTACAATTCTCGACAGGTTCTGCAAGGTAGAAACACGCAGAACGTAGTCATGTTGCCC TCTGCGCCACCACCGCCGCCGCTGTCGCCGCCGCCGCCAGGCCCGGCCACGGCAACAGTGGTGACGTCCAAGGCG AATGCTGCCCTGAGCGAGGTCAATCAGCAACAGCCAGCTCCTGAAGGTAGCGGTGGCACGAGTGATAAATTATGA |