© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10875 |
| Gene name | |
| Location | Contig_919:8247..10123 |
| Strand | - |
| Gene length (bp) | 1876 |
| Transcript length (bp) | 1659 |
| Coding sequence length (bp) | 1659 |
| Protein length (aa) | 553 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10281 | Ish1 | Putative nuclear envelope organisation protein | 3.5E-06 | 30 | 65 |
| PF10281 | Ish1 | Putative nuclear envelope organisation protein | 1.3E-12 | 131 | 165 |
| PF10281 | Ish1 | Putative nuclear envelope organisation protein | 4.8E-14 | 186 | 221 |
| PF10281 | Ish1 | Putative nuclear envelope organisation protein | 1.1E-08 | 253 | 287 |
| PF10281 | Ish1 | Putative nuclear envelope organisation protein | 2.5E-10 | 336 | 369 |
| PF10281 | Ish1 | Putative nuclear envelope organisation protein | 6.3E-11 | 454 | 488 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q03104|MSC1_YEAST | Meiotic sister chromatid recombination protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSC1 PE=1 SV=1 | 8 | 500 | 2.0E-25 |
| sp|Q9Y7X6|ISH1_SCHPO | Stress response protein ish1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ish1 PE=1 SV=1 | 74 | 470 | 1.0E-19 |
| sp|Q9Y7X6|ISH1_SCHPO | Stress response protein ish1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ish1 PE=1 SV=1 | 7 | 489 | 7.0E-18 |
| sp|O94559|YF65_SCHPO | Uncharacterized protein C23C4.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23C4.05c PE=3 SV=1 | 132 | 477 | 3.0E-14 |
| sp|O94559|YF65_SCHPO | Uncharacterized protein C23C4.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23C4.05c PE=3 SV=1 | 73 | 279 | 2.0E-10 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.093 | 0.096 | 0.8412 | 0.0589 | 0.2346 | 0.0314 | 0.3081 | 0.1453 | 0.143 | 0.0044 |
| Orthofinder run ID | 4 |
| Orthogroup | 4846 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10875 MRHVAALLTAAVAASGVVASSWFPGSKAAYNKWHQSELERWLSDHNVPYPQKADRTALEDLVSKHWNDLVLEPYK QWDTAQLSSFVRNKGKEAGAEADEAKDNLVAQVKANWYETEDNARNAWASVKEWIFDTWTESQLKSFCDRHGIPV PQPRHRDTLLQKVRSGYEAAAKKASETTAYPGNWLFETWSESDLKTWLDTHGFPAPQPSSRDKLIASVRRNSRLA YLQAQQQVASASASAHAAYSTLTDMIIDAWNESQLKEFCDKNGIPVPQGTRVNELRALVRKHRAEILGDTISASA ASAFGAATSKAGNEFAKASDSASLAAQDAFNQAVGTWSESRLKAYLDARGVPVPQQSSADELRALVRKHSHKAWV GSSAWTFDDFSLENLKEYLSEHGNDVARTAAEKKDASRDELARAAQSAYSSASTAGGAEYASMTKAIASATAAVK KDTFKSWSSTDLKAYLDSYGIPVPHGSKVEELKALARKQSTYFKYGVSSPSETIFAKLGETAREGWNWVAHQLNL GSRAAQQKAAEAKASARSKTEQIKEEL* |
| Coding | >Hirsu2|10875 ATGAGGCACGTAGCCGCGCTCCTGACGGCTGCCGTGGCGGCCTCTGGCGTCGTCGCCAGCAGCTGGTTTCCGGGC TCCAAGGCTGCCTACAACAAATGGCACCAGTCGGAACTCGAGCGCTGGCTGTCCGATCACAACGTCCCCTATCCC CAGAAGGCTGATCGTACTGCTCTGGAAGACCTGGTCAGCAAGCACTGGAATGACCTAGTGCTCGAGCCCTACAAG CAGTGGGATACAGCGCAGCTGAGCAGCTTCGTCCGCAACAAGGGCAAGGAGGCCGGTGCAGAGGCCGACGAGGCC AAGGATAACCTCGTTGCTCAGGTCAAAGCCAACTGGTACGAGACGGAGGACAACGCTCGCAACGCCTGGGCTAGC GTCAAGGAGTGGATTTTTGACACCTGGACCGAGAGCCAGCTCAAGTCCTTCTGTGACAGACATGGCATCCCAGTC CCCCAACCACGCCATCGCGACACCCTCTTGCAAAAGGTTCGCTCTGGCTACGAAGCCGCGGCCAAGAAGGCGAGC GAGACCACCGCCTACCCGGGCAACTGGCTTTTCGAGACCTGGTCTGAGTCTGACCTGAAGACTTGGCTCGACACA CACGGATTCCCTGCGCCTCAACCCTCAAGCCGTGACAAACTCATTGCGTCGGTTCGACGTAACTCTCGACTGGCC TATCTCCAGGCCCAACAACAAGTGGCAAGCGCCAGCGCCAGCGCCCACGCGGCTTATTCCACGCTTACGGACATG ATCATTGACGCTTGGAACGAATCGCAGCTCAAAGAGTTCTGCGACAAGAATGGCATACCCGTCCCTCAAGGCACG AGGGTCAACGAGCTTCGTGCCCTAGTTCGCAAGCACCGCGCCGAGATACTTGGCGACACGATTAGTGCCAGCGCG GCGTCGGCATTCGGGGCTGCCACTTCCAAGGCCGGCAACGAATTCGCCAAGGCGTCAGACAGCGCTTCGCTGGCG GCTCAGGATGCCTTCAACCAGGCCGTGGGAACATGGTCCGAGAGCCGTCTCAAGGCTTACCTGGATGCCCGAGGG GTCCCTGTTCCCCAGCAGTCTTCGGCGGATGAACTTCGAGCGCTCGTTCGTAAGCATTCGCACAAGGCCTGGGTG GGGTCGAGTGCCTGGACATTTGACGACTTCTCCCTCGAGAACTTGAAAGAGTACCTCTCCGAGCACGGTAATGAT GTCGCCAGAACCGCGGCCGAGAAGAAGGACGCTTCCCGGGACGAGCTCGCCCGCGCCGCACAGTCGGCTTATTCG TCGGCCTCGACTGCAGGTGGCGCCGAGTACGCTTCCATGACCAAGGCCATCGCGTCGGCCACGGCAGCTGTCAAG AAAGACACTTTCAAGAGCTGGTCCAGCACTGATCTCAAGGCTTATCTCGACAGCTACGGCATTCCCGTTCCACAC GGGTCCAAAGTCGAAGAATTGAAAGCCTTGGCTCGCAAGCAATCGACGTATTTCAAGTACGGCGTATCATCACCG AGCGAGACCATCTTCGCTAAGCTCGGGGAAACGGCGAGGGAGGGTTGGAACTGGGTCGCCCATCAGCTAAATCTG GGAAGTCGAGCCGCTCAACAGAAAGCGGCAGAAGCTAAAGCATCGGCCAGAAGCAAGACGGAGCAAATCAAGGAA GAACTATAG |
| Transcript | >Hirsu2|10875 ATGAGGCACGTAGCCGCGCTCCTGACGGCTGCCGTGGCGGCCTCTGGCGTCGTCGCCAGCAGCTGGTTTCCGGGC TCCAAGGCTGCCTACAACAAATGGCACCAGTCGGAACTCGAGCGCTGGCTGTCCGATCACAACGTCCCCTATCCC CAGAAGGCTGATCGTACTGCTCTGGAAGACCTGGTCAGCAAGCACTGGAATGACCTAGTGCTCGAGCCCTACAAG CAGTGGGATACAGCGCAGCTGAGCAGCTTCGTCCGCAACAAGGGCAAGGAGGCCGGTGCAGAGGCCGACGAGGCC AAGGATAACCTCGTTGCTCAGGTCAAAGCCAACTGGTACGAGACGGAGGACAACGCTCGCAACGCCTGGGCTAGC GTCAAGGAGTGGATTTTTGACACCTGGACCGAGAGCCAGCTCAAGTCCTTCTGTGACAGACATGGCATCCCAGTC CCCCAACCACGCCATCGCGACACCCTCTTGCAAAAGGTTCGCTCTGGCTACGAAGCCGCGGCCAAGAAGGCGAGC GAGACCACCGCCTACCCGGGCAACTGGCTTTTCGAGACCTGGTCTGAGTCTGACCTGAAGACTTGGCTCGACACA CACGGATTCCCTGCGCCTCAACCCTCAAGCCGTGACAAACTCATTGCGTCGGTTCGACGTAACTCTCGACTGGCC TATCTCCAGGCCCAACAACAAGTGGCAAGCGCCAGCGCCAGCGCCCACGCGGCTTATTCCACGCTTACGGACATG ATCATTGACGCTTGGAACGAATCGCAGCTCAAAGAGTTCTGCGACAAGAATGGCATACCCGTCCCTCAAGGCACG AGGGTCAACGAGCTTCGTGCCCTAGTTCGCAAGCACCGCGCCGAGATACTTGGCGACACGATTAGTGCCAGCGCG GCGTCGGCATTCGGGGCTGCCACTTCCAAGGCCGGCAACGAATTCGCCAAGGCGTCAGACAGCGCTTCGCTGGCG GCTCAGGATGCCTTCAACCAGGCCGTGGGAACATGGTCCGAGAGCCGTCTCAAGGCTTACCTGGATGCCCGAGGG GTCCCTGTTCCCCAGCAGTCTTCGGCGGATGAACTTCGAGCGCTCGTTCGTAAGCATTCGCACAAGGCCTGGGTG GGGTCGAGTGCCTGGACATTTGACGACTTCTCCCTCGAGAACTTGAAAGAGTACCTCTCCGAGCACGGTAATGAT GTCGCCAGAACCGCGGCCGAGAAGAAGGACGCTTCCCGGGACGAGCTCGCCCGCGCCGCACAGTCGGCTTATTCG TCGGCCTCGACTGCAGGTGGCGCCGAGTACGCTTCCATGACCAAGGCCATCGCGTCGGCCACGGCAGCTGTCAAG AAAGACACTTTCAAGAGCTGGTCCAGCACTGATCTCAAGGCTTATCTCGACAGCTACGGCATTCCCGTTCCACAC GGGTCCAAAGTCGAAGAATTGAAAGCCTTGGCTCGCAAGCAATCGACGTATTTCAAGTACGGCGTATCATCACCG AGCGAGACCATCTTCGCTAAGCTCGGGGAAACGGCGAGGGAGGGTTGGAACTGGGTCGCCCATCAGCTAAATCTG GGAAGTCGAGCCGCTCAACAGAAAGCGGCAGAAGCTAAAGCATCGGCCAGAAGCAAGACGGAGCAAATCAAGGAA GAACTATAG |
| Gene | >Hirsu2|10875 ATGAGGCACGTAGCCGCGCTCCTGACGGCTGCCGTGGCGGCCTCTGGCGTCGTCGCCAGCAGCTGGTTTCCGGGC TCCAAGGCTGGTACGCGCGACTGAGGCCCCCTTGTTTCAGGACCCTACTCTGCTTGCCCAACTTCCTCCTCCTCT CTGCCGGCTTTCTCAGCCTATCCAGCTGACGCGAGGCCTGTCCAGCCTACAACAAATGGCACCAGTCGGAACTCG AGCGCTGGCTGTCCGATCACAACGTCCCCTATCCCCAGAAGGCTGATCGTACTGCTCTGGAAGACCTGGTCAGCA AGCACTGGAATGACCTAGTGCTCGAGCCCTACAAGCAGTGGGATACAGCGCAGCTGAGCAGCTTCGTCCGCAACA AGGGCAAGGAGGCCGGTGCAGAGGCCGACGAGGCCAAGGATAACCTCGTTGCTCAGGTCAAAGCCAACTGGTACG AGACGGAGGACAACGCTCGCAACGCCTGGGCTAGCGTCAAGGAGTGGATTTTTGACACCTGGACCGAGAGCCAGC TCAAGTCCTTCTGTGACAGACATGGCATCCCAGGTATGCACTGCCCCTCGCTCCTTTCGTCCGGGTTCCTCCGGC GTCACTCGGTCACATGTATATCCGTGCATGGTTGTCCGCTGATCGCCGGCGTCTGCCTTCTACAGTCCCCCAACC ACGCCATCGCGACACCCTCTTGCAAAAGGTTCGCTCTGGCTACGAAGCCGCGGCCAAGAAGGCGAGCGAGACCAC CGCCTACCCGGGCAACTGGCTTTTCGAGACCTGGTCTGAGTCTGACCTGAAGACTTGGCTCGACACACACGGATT CCCTGCGCCTCAACCCTCAAGCCGTGACAAACTCATTGCGTCGGTTCGACGTAACTCTCGACTGGCCTATCTCCA GGCCCAACAACAAGTGGCAAGCGCCAGCGCCAGCGCCCACGCGGCTTATTCCACGCTTACGGACATGATCATTGA CGCTTGGAACGAATCGCAGCTCAAAGAGTTCTGCGACAAGAATGGCATACCCGTCCCTCAAGGCACGAGGGTCAA CGAGCTTCGTGCCCTAGTTCGCAAGCACCGCGCCGAGATACTTGGCGACACGATTAGTGCCAGCGCGGCGTCGGC ATTCGGGGCTGCCACTTCCAAGGCCGGCAACGAATTCGCCAAGGCGTCAGACAGCGCTTCGCTGGCGGCTCAGGA TGCCTTCAACCAGGCCGTGGGAACATGGTCCGAGAGCCGTCTCAAGGCTTACCTGGATGCCCGAGGGGTCCCTGT TCCCCAGCAGTCTTCGGCGGATGAACTTCGAGCGCTCGTTCGTAAGCATTCGCACAAGGCCTGGGTGGGGTCGAG TGCCTGGACATTTGACGACTTCTCCCTCGAGAACTTGAAAGAGTACCTCTCCGAGCACGGTAATGATGTCGCCAG AACCGCGGCCGAGAAGAAGGACGCTTCCCGGGACGAGCTCGCCCGCGCCGCACAGTCGGCTTATTCGTCGGCCTC GACTGCAGGTGGCGCCGAGTACGCTTCCATGACCAAGGCCATCGCGTCGGCCACGGCAGCTGTCAAGAAAGACAC TTTCAAGAGCTGGTCCAGCACTGATCTCAAGGCTTATCTCGACAGCTACGGCATTCCCGTTCCACACGGGTCCAA AGTCGAAGAATTGAAAGCCTTGGCTCGCAAGCAATCGACGTATTTCAAGTACGGCGTATCATCACCGAGCGAGAC CATCTTCGCTAAGCTCGGGGAAACGGCGAGGGAGGGTTGGAACTGGGTCGCCCATCAGCTAAATCTGGGAAGTCG AGCCGCTCAACAGAAAGCGGCAGAAGCTAAAGCATCGGCCAGAAGCAAGACGGAGCAAATCAAGGAAGAACTATA G |