Protein ID | Hirsu2|1086 |
Gene name | |
Location | Contig_1228:3241..4476 |
Strand | - |
Gene length (bp) | 1235 |
Transcript length (bp) | 1020 |
Coding sequence length (bp) | 1020 |
Protein length (aa) | 340 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11754 | Velvet | Velvet factor | 4.3E-09 | 64 | 126 |
PF11754 | Velvet | Velvet factor | 5.4E-34 | 126 | 242 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.2635 | 0.9387 | 0.0224 | 0.0269 | 0.0605 | 0.001 | 0.0731 | 0.1422 | 0.0119 | 0.0016 |
Orthofinder run ID | 4 |
Orthogroup | 1392 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1086 MASNAGSYLDLPFLQPGRHSSSLQYLGGGGGGGGGGGGGGGELSLASDDTASQQAESYGDPQRQLTLRQAPMHAR VAIGKEKDRKPIDPPPIVQLLDKRHNGKSGLYDSPYLFMTSSLVPENYGESSPSSSSGSSKEQELPSNYLVGSLV SSIHRLRDTDNVEGGFFVFGDLSVKREGRFRLRFTLYERDQHSSAPSFYFVSELVTNVFTVFSTKLFPGMADSTQ LTRTFSNQGVKVRLRKDSSGMAARKRNRGVTDVADDFLDRQTKRASYDRELPLNNYGVSELMDPLHGVVSSAPPN SFLVAADAMSSSSSTSSRNAGLGIPLSTSGYYFTGAHYY* |
Coding | >Hirsu2|1086 ATGGCCAGCAACGCCGGCAGCTACCTAGACCTGCCCTTCCTGCAGCCCGGCCGCCACTCGTCCAGCCTGCAGTAC CTGGGCGGTGGCGGCGGCGGCGGCGGAGGCGGCGGCGGCGGCGGCGGCGAGCTGTCTCTGGCGAGCGACGACACC GCCTCGCAGCAGGCCGAGTCGTACGGCGATCCCCAGCGGCAGCTGACGCTCAGGCAAGCGCCAATGCACGCACGA GTGGCCATAGGAAAGGAGAAGGACCGCAAACCGATCGATCCTCCGCCCATCGTCCAGCTGCTCGACAAGCGACAC AATGGGAAGAGCGGCCTCTACGACAGCCCCTATCTGTTCATGACGTCGTCGCTGGTACCGGAAAACTACGGCGAG TCGTCGCCGTCCAGCAGCAGCGGCAGCAGCAAAGAGCAGGAGCTCCCGTCCAACTACCTCGTCGGCTCGCTCGTC TCGTCGATCCACCGGCTGAGGGACACGGACAACGTCGAGGGCGGCTTCTTCGTCTTCGGCGACCTGTCGGTGAAG CGCGAGGGCCGGTTCCGGCTCCGGTTCACGCTGTACGAGCGCGACCAGCACAGCTCGGCGCCCAGCTTCTACTTC GTCTCGGAGCTGGTGACCAACGTCTTCACCGTCTTCTCCACCAAGCTCTTCCCCGGCATGGCCGACTCGACGCAG TTGACGCGCACCTTCAGCAACCAGGGCGTCAAGGTCCGGCTCCGCAAGGACTCGAGCGGCATGGCGGCCAGGAAG CGCAACCGGGGCGTCACCGACGTGGCCGACGACTTCCTCGACCGACAGACGAAGCGGGCCTCGTACGACCGGGAA CTCCCGCTCAACAACTACGGCGTCTCCGAACTGATGGACCCCCTTCACGGCGTCGTCAGCTCGGCCCCGCCCAAC AGCTTCCTCGTGGCCGCCGACGCCATGTCATCGTCCTCGTCGACGTCATCGAGGAACGCCGGCCTCGGGATACCG CTGTCGACGAGCGGATACTACTTCACCGGCGCGCACTATTACTAG |
Transcript | >Hirsu2|1086 ATGGCCAGCAACGCCGGCAGCTACCTAGACCTGCCCTTCCTGCAGCCCGGCCGCCACTCGTCCAGCCTGCAGTAC CTGGGCGGTGGCGGCGGCGGCGGCGGAGGCGGCGGCGGCGGCGGCGGCGAGCTGTCTCTGGCGAGCGACGACACC GCCTCGCAGCAGGCCGAGTCGTACGGCGATCCCCAGCGGCAGCTGACGCTCAGGCAAGCGCCAATGCACGCACGA GTGGCCATAGGAAAGGAGAAGGACCGCAAACCGATCGATCCTCCGCCCATCGTCCAGCTGCTCGACAAGCGACAC AATGGGAAGAGCGGCCTCTACGACAGCCCCTATCTGTTCATGACGTCGTCGCTGGTACCGGAAAACTACGGCGAG TCGTCGCCGTCCAGCAGCAGCGGCAGCAGCAAAGAGCAGGAGCTCCCGTCCAACTACCTCGTCGGCTCGCTCGTC TCGTCGATCCACCGGCTGAGGGACACGGACAACGTCGAGGGCGGCTTCTTCGTCTTCGGCGACCTGTCGGTGAAG CGCGAGGGCCGGTTCCGGCTCCGGTTCACGCTGTACGAGCGCGACCAGCACAGCTCGGCGCCCAGCTTCTACTTC GTCTCGGAGCTGGTGACCAACGTCTTCACCGTCTTCTCCACCAAGCTCTTCCCCGGCATGGCCGACTCGACGCAG TTGACGCGCACCTTCAGCAACCAGGGCGTCAAGGTCCGGCTCCGCAAGGACTCGAGCGGCATGGCGGCCAGGAAG CGCAACCGGGGCGTCACCGACGTGGCCGACGACTTCCTCGACCGACAGACGAAGCGGGCCTCGTACGACCGGGAA CTCCCGCTCAACAACTACGGCGTCTCCGAACTGATGGACCCCCTTCACGGCGTCGTCAGCTCGGCCCCGCCCAAC AGCTTCCTCGTGGCCGCCGACGCCATGTCATCGTCCTCGTCGACGTCATCGAGGAACGCCGGCCTCGGGATACCG CTGTCGACGAGCGGATACTACTTCACCGGCGCGCACTATTACTAG |
Gene | >Hirsu2|1086 ATGGCCAGCAACGCCGGCAGCTACCTAGACCTGCCCTTCCTGCAGCCCGGCCGCCACTCGTCCAGCCTGCAGTAC CTGGGCGGTGGCGGCGGCGGCGGCGGAGGCGGCGGCGGCGGCGGCGGCGAGCTGTCTCTGGCGAGCGACGACACC GCCTCGCAGCAGGCCGAGTCGTACGGCGATCCCCAGCGGCAGCTGACGCTCAGGCAAGCGCCAATGCACGCACGA GTGGCCATAGGAAAGGAGAAGGGTGCGTGCCCCGACTTTTGAGGGGGGGGGGGCAGTTTTCGTGGTTCGGAGAGG CTAACGCGGCGCATCTAGACCGCAAACCGATCGATCCTCCGCCCATCGTCCAGCTGCTCGACAAGCGACACAATG GGAAGAGCGGCCTCTACGACAGTCAGTATCCCCTGCTCTCCCTCCCTCCCCTCCCTCACCCCCTCTCCCATCCAC GCATCACCCCGTCTCTCTCTTGCCGCTCTGCTCTCTCCCCTCTCGCGACGCGGTGCCGAATGCGATTCTCACCCG CCCGTTCTCGCGCAGGCCCCTATCTGTTCATGACGTCGTCGCTGGTACCGGAAAACTACGGCGAGTCGTCGCCGT CCAGCAGCAGCGGCAGCAGCAAAGAGCAGGAGCTCCCGTCCAACTACCTCGTCGGCTCGCTCGTCTCGTCGATCC ACCGGCTGAGGGACACGGACAACGTCGAGGGCGGCTTCTTCGTCTTCGGCGACCTGTCGGTGAAGCGCGAGGGCC GGTTCCGGCTCCGGTTCACGCTGTACGAGCGCGACCAGCACAGCTCGGCGCCCAGCTTCTACTTCGTCTCGGAGC TGGTGACCAACGTCTTCACCGTCTTCTCCACCAAGCTCTTCCCCGGCATGGCCGACTCGACGCAGTTGACGCGCA CCTTCAGCAACCAGGGCGTCAAGGTCCGGCTCCGCAAGGACTCGAGCGGCATGGCGGCCAGGAAGCGCAACCGGG GCGTCACCGACGTGGCCGACGACTTCCTCGACCGACAGACGAAGCGGGCCTCGTACGACCGGGAACTCCCGCTCA ACAACTACGGCGTCTCCGAACTGATGGACCCCCTTCACGGCGTCGTCAGCTCGGCCCCGCCCAACAGCTTCCTCG TGGCCGCCGACGCCATGTCATCGTCCTCGTCGACGTCATCGAGGAACGCCGGCCTCGGGATACCGCTGTCGACGA GCGGATACTACTTCACCGGCGCGCACTATTACTAG |